Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

2397205 .. 2399587

Gene Structure 2383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGAGTTCGTTCTCGATTACCCGGAAGAAGACTCCGTTCCAGAAGCACAGGGAGGAGGAAGAGGCAAAGAAAAAGAGAGCGGAGGATGAAACAGCTCGGTTATATGCGGAGTTTGTGGAGTCATTTCAAGGGGATAACGCACCTGGGTCGAAGGCCTTTGTTAGAGGAGGAACAATCAATCCCAATGAGAAGGTGAAGCCGGATTCCAAAGGTGAAAAGTCCAAAGATGGGGTATCTGTTCCAAAGAAGGGGAGTAGTTCTGTAACATGTTCTGTTTACAGTAACTCATTTGGCAACCTATGGAAAAGAGCTTCGATAACAAGGAAAGAACCTGAGAAGAGGGAGGAGGAGAGGCCGAGGGAGAAAGAAAAAGGAAAGTCTCGAAACATCGATCATTTTATGGAAGAGTTGAAGCATGAGCAGGAGATGAGGGAGAGGCGAAATCAAGAGCGTGAAAATTGCCATGATGGGCGGCAGATGGAGAATTCTACACCATCCAGTCGCTTTGATGAACTTCCTGACGAATTTGATCCAAGTGGAAAGCTTCTTGGATCATTTGATGATGGTCGATCCACAAACTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 Surp cwf21

Protein Analysis

195

Amino Acids

22.37

Weight (kDa)

8.42

Isoelectric Point (pI)

54.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	80
AciI	CCGC	3 cut(s)	80, 107, 472
AclWI	GGATC	3 cut(s)	524, 559, 564
AcsI	RAATTY	2 cut(s)	484, 524
AfiI	CCNNNNNNNGG	2 cut(s)	228, 248
AflIII	ACRYGT	1 cut(s)	266
AgsI	TTSAA	2 cut(s)	128, 412
AjnI	CCWGG	1 cut(s)	142
AloI	GAACNNNNNNTCC	2 cut(s)	163, 195
AluBI	AGCT	3 cut(s)	95, 311, 544
AluI	AGCT	3 cut(s)	95, 311, 544
Alw26I	GTCTC	1 cut(s)	384
AlwI	GGATC	3 cut(s)	524, 559, 564
AoxI	GGCC	2 cut(s)	153, 353
ApoI	RAATTY	2 cut(s)	484, 524
AsuC2I	CCSGG	1 cut(s)	22
AsuHPI	GGTGA	2 cut(s)	205, 224
BbsI	GAAGAC	1 cut(s)	35
BccI	CCATC	5 cut(s)	221, 461, 472, 502, 557
BcgI	CGANNNNNNTGC	2 cut(s)	129, 163
BciT130I	CCWGG	1 cut(s)	144
BcnI	CCSGG	1 cut(s)	22
BcoDI	GTCTC	1 cut(s)	384
BisI	GCNGC	1 cut(s)	473
BlsI	GCNGC	1 cut(s)	474
Bme1390I	CCNGG	2 cut(s)	22, 144
BmrFI	CCNGG	2 cut(s)	22, 144
BpiI	GAAGAC	1 cut(s)	35
BpuMI	CCSGG	1 cut(s)	22
Bsa29I	ATCGAT	1 cut(s)	390
BsaJI	CCNNGG	2 cut(s)	143, 356
Bsc4I	CCNNNNNNNGG	2 cut(s)	228, 248
Bse1I	ACTGG	1 cut(s)	498
BseBI	CCWGG	1 cut(s)	144
BseCI	ATCGAT	1 cut(s)	390
BseDI	CCNNGG	2 cut(s)	143, 356
BseGI	GGATG	2 cut(s)	91, 494
BseLI	CCNNNNNNNGG	2 cut(s)	228, 248
BseMII	CTCAG	1 cut(s)	324
BseNI	ACTGG	1 cut(s)	498
BseRI	GAGGAG	4 cut(s)	68, 180, 359, 362
BshFI	GGCC	2 cut(s)	155, 355
BshVI	ATCGAT	1 cut(s)	390
BsiSI	CCGG	2 cut(s)	22, 200
BslI	CCNNNNNNNGG	2 cut(s)	228, 248
BsmAI	GTCTC	1 cut(s)	384
BsnI	GGCC	2 cut(s)	155, 355
Bsp143I	GATC	4 cut(s)	391, 529, 551, 569
BspACI	CCGC	3 cut(s)	80, 107, 472
BspANI	GGCC	2 cut(s)	155, 355
BspCNI	CTCAG	1 cut(s)	325
BspDI	ATCGAT	1 cut(s)	390
BspPI	GGATC	3 cut(s)	524, 559, 564
BsrBI	CCGCTC	1 cut(s)	80
BsrI	ACTGG	1 cut(s)	498
BssECI	CCNNGG	2 cut(s)	143, 356
BssMI	GATC	4 cut(s)	391, 529, 551, 569
Bst2UI	CCWGG	1 cut(s)	144
Bst4CI	ACNGT	1 cut(s)	281
Bst6I	CTCTTC	3 cut(s)	54, 332, 399
BstDEI	CTNAG	1 cut(s)	333
BstF5I	GGATG	2 cut(s)	91, 494
BstKTI	GATC	4 cut(s)	394, 532, 554, 572
BstMAI	GTCTC	1 cut(s)	384
BstMBI	GATC	4 cut(s)	391, 529, 551, 569
BstNI	CCWGG	1 cut(s)	144
BstNSI	RCATGY	1 cut(s)	270
BstSCI	CCNGG	2 cut(s)	20, 142
BstV2I	GAAGAC	1 cut(s)	35
Bsu15I	ATCGAT	1 cut(s)	390
BsuRI	GGCC	2 cut(s)	155, 355
BsuTUI	ATCGAT	1 cut(s)	390
BtsCI	GGATG	2 cut(s)	91, 494
ClaI	ATCGAT	1 cut(s)	390
CviAII	CATG	3 cut(s)	267, 416, 464
CviJI	RGCY	6 cut(s)	95, 155, 199, 311, 355, 544
CviKI_1	RGCY	6 cut(s)	95, 155, 199, 311, 355, 544
DdeI	CTNAG	1 cut(s)	333
DpnI	GATC	4 cut(s)	393, 531, 553, 571
DpnII	GATC	4 cut(s)	391, 529, 551, 569
Eam1104I	CTCTTC	3 cut(s)	54, 332, 399
EarI	CTCTTC	3 cut(s)	54, 332, 399
Eco147I	AGGCCT	1 cut(s)	155
EcoRI	GAATTC	1 cut(s)	484
EcoRII	CCWGG	1 cut(s)	142
FaeI	CATG	3 cut(s)	270, 419, 467
FaiI	YATR	7 cut(s)	103, 105, 268, 301, 401, 417, 465
FatI	CATG	3 cut(s)	266, 415, 463
Fnu4HI	GCNGC	1 cut(s)	473
FokI	GGATG	2 cut(s)	98, 481
Fsp4HI	GCNGC	1 cut(s)	473
GluI	GCNGC	1 cut(s)	473
HaeIII	GGCC	2 cut(s)	155, 355
HapII	CCGG	2 cut(s)	22, 200
Hin1II	CATG	3 cut(s)	270, 419, 467
HindIII	AAGCTT	1 cut(s)	542
HinfI	GANTC	3 cut(s)	31, 119, 203
HpaII	CCGG	2 cut(s)	22, 200
HphI	GGTGA	2 cut(s)	205, 224
Hpy166II	GTNNAC	1 cut(s)	277
Hpy188III	TCNNGA	5 cut(s)	13, 40, 381, 446, 518
Hpy8I	GTNNAC	1 cut(s)	277
HpyAV	CCTTC	3 cut(s)	145, 184, 241
HpyCH4III	ACNGT	1 cut(s)	281
HpyF3I	CTNAG	1 cut(s)	333
Hsp92II	CATG	3 cut(s)	270, 419, 467
Kzo9I	GATC	4 cut(s)	391, 529, 551, 569
MaeIII	GTNAC	2 cut(s)	262, 281
MalI	GATC	4 cut(s)	393, 531, 553, 571
MbiI	CCGCTC	1 cut(s)	80
MboI	GATC	4 cut(s)	391, 529, 551, 569
MboII	GAAGA	5 cut(s)	37, 40, 71, 349, 416
MluCI	AATT	3 cut(s)	457, 484, 524
MlyI	GAGTC	2 cut(s)	25, 128
MspI	CCGG	2 cut(s)	22, 200
MspR9I	CCNGG	2 cut(s)	22, 144
MvaI	CCWGG	1 cut(s)	144
NciI	CCSGG	1 cut(s)	22
NdeII	GATC	4 cut(s)	391, 529, 551, 569
NlaIII	CATG	3 cut(s)	270, 419, 467
NmeAIII	GCCGAG	1 cut(s)	381
NspI	RCATGY	1 cut(s)	270
PceI	AGGCCT	1 cut(s)	155
PciI	ACATGT	1 cut(s)	266
PfeI	GAWTC	1 cut(s)	203
PkrI	GCNGC	1 cut(s)	474
PleI	GAGTC	2 cut(s)	25, 127
PpsI	GAGTC	2 cut(s)	25, 127
PscI	ACATGT	1 cut(s)	266
Psp6I	CCWGG	1 cut(s)	142
PspGI	CCWGG	1 cut(s)	142
SatI	GCNGC	1 cut(s)	473
Sau3AI	GATC	4 cut(s)	391, 529, 551, 569
SchI	GAGTC	2 cut(s)	25, 128
ScrFI	CCNGG	2 cut(s)	22, 144
SetI	ASST	8 cut(s)	97, 145, 195, 214, 300, 313, 334, 546
Sse9I	AATT	3 cut(s)	457, 484, 524
SseBI	AGGCCT	1 cut(s)	155
SsiI	CCGC	3 cut(s)	80, 107, 472
StuI	AGGCCT	1 cut(s)	155
StyD4I	CCNGG	2 cut(s)	20, 142
TaaI	ACNGT	1 cut(s)	281
TaqI	TCGA	6 cut(s)	14, 149, 314, 382, 390, 568
TasI	AATT	3 cut(s)	457, 484, 524
TauI	GCSGC	1 cut(s)	475
TfiI	GAWTC	1 cut(s)	203
TspDTI	ATGAA	2 cut(s)	102, 525
TspGWI	ACGGA	1 cut(s)	24
XapI	RAATTY	2 cut(s)	484, 524
XceI	RCATGY	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.