pycom15g04130

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Reverse (-)
2494400 .. 2494816
417 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 417 bp
ATGGTTTTTTCCACCGGAACTCTCATCGACTCGGGGACAGTGATAACGCGGCTGCCGGCAGCGGCGTACACTGCGATGAGAGACGCTTTTAGGGAAGGGATGAAGAGGTATGGGGAACCCAAGACAGTTCAGGGGGTACTGGACACTTGCTACGACCTTAGAGCGTATAACTTGGAGACGGTCTCGTTTCCGGCGGTAGCGTTTACGTTCAGTGGCGGGCTTACTTTGGAATTGAAATCGGCGGGGACAGTGATTGTGATAGTTGATACTTCGCAGGTTTGCTTGGTGATTCTTCCTAACACCGAAGATCGATCATTGGGAATTTTCAGCAGAAAGGGTTTGAAGTGGTGTACGATGTTGCCGGAGGGAAGATTGGATTCGCCGCTGGAAGTTGCTAAATTGATTATGATTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04071 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04140 map04142 map04210 map04915 map05152
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

139

Amino Acids

15.06

Weight (kDa)

6.25

Isoelectric Point (pI)

33.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_C PF14541 5 - 104 2.4e-12 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 265
AccII CGCG 1 cut(s) 49
AciI CCGC 6 cut(s) 49, 62, 194, 216, 242, 383
AcsI RAATTY 1 cut(s) 321
AfaI GTAC 3 cut(s) 68, 138, 352
AgsI TTSAA 2 cut(s) 235, 343
Alw26I GTCTC 3 cut(s) 75, 170, 187
Ama87I CYCGRG 1 cut(s) 31
ApeKI GCWGC 2 cut(s) 52, 59
ApoI RAATTY 1 cut(s) 321
AsuHPI GGTGA 1 cut(s) 298
AvaI CYCGRG 1 cut(s) 31
BbvI GCAGC 2 cut(s) 39, 71
BcoDI GTCTC 3 cut(s) 75, 170, 187
BfuAI ACCTGC 1 cut(s) 265
BisI GCNGC 5 cut(s) 50, 53, 60, 63, 383
BlsI GCNGC 5 cut(s) 51, 54, 61, 64, 384
BmeT110I CYCGRG 1 cut(s) 31
BmiI GGNNCC 1 cut(s) 117
BplI GAGNNNNNCTC 2 cut(s) 167, 199
Bsa29I ATCGAT 1 cut(s) 310
BsaI GGTCTC 1 cut(s) 187
BsaWI WCCGGW 1 cut(s) 14
Bse118I RCCGGY 1 cut(s) 55
Bse1I ACTGG 1 cut(s) 144
BseCI ATCGAT 1 cut(s) 310
BseGI GGATG 1 cut(s) 105
BseNI ACTGG 1 cut(s) 144
BseXI GCAGC 2 cut(s) 39, 71
Bsh1236I CGCG 1 cut(s) 49
BshVI ATCGAT 1 cut(s) 310
BsiHKCI CYCGRG 1 cut(s) 31
BsiSI CCGG 4 cut(s) 15, 56, 191, 362
BslFI GGGAC 2 cut(s) 49, 259
BsmAI GTCTC 3 cut(s) 75, 170, 187
BsmBI CGTCTC 2 cut(s) 75, 170
BsmFI GGGAC 2 cut(s) 49, 259
Bso31I GGTCTC 1 cut(s) 187
BsoBI CYCGRG 1 cut(s) 31
Bsp143I GATC 2 cut(s) 307, 311
BspACI CCGC 6 cut(s) 49, 62, 194, 216, 242, 383
BspDI ATCGAT 1 cut(s) 310
BspFNI CGCG 1 cut(s) 49
BspLI GGNNCC 1 cut(s) 117
BspMI ACCTGC 1 cut(s) 265
BspTNI GGTCTC 1 cut(s) 187
BsrFI RCCGGY 1 cut(s) 55
BsrI ACTGG 1 cut(s) 144
BssAI RCCGGY 1 cut(s) 55
BssMI GATC 2 cut(s) 307, 311
Bst4CI ACNGT 4 cut(s) 40, 127, 181, 250
Bst6I CTCTTC 1 cut(s) 98
BstC8I GCNNGC 2 cut(s) 57, 218
BstDEI CTNAG 1 cut(s) 158
BstF5I GGATG 1 cut(s) 105
BstFNI CGCG 1 cut(s) 49
BstKTI GATC 2 cut(s) 310, 314
BstMAI GTCTC 3 cut(s) 75, 170, 187
BstMBI GATC 2 cut(s) 307, 311
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstUI CGCG 1 cut(s) 49
BstV1I GCAGC 2 cut(s) 39, 71
Bsu15I ATCGAT 1 cut(s) 310
BsuTUI ATCGAT 1 cut(s) 310
BtgZI GCGATG 1 cut(s) 89
BtsCI GGATG 1 cut(s) 105
BtsI GCAGTG 1 cut(s) 69
BtsIMutI CAGTG 4 cut(s) 45, 69, 217, 255
BveI ACCTGC 1 cut(s) 265
Cac8I GCNNGC 2 cut(s) 57, 218
Cfr10I RCCGGY 1 cut(s) 55
ClaI ATCGAT 1 cut(s) 310
CseI GACGC 1 cut(s) 92
Csp6I GTAC 3 cut(s) 67, 137, 351
CviJI RGCY 2 cut(s) 52, 220
CviKI_1 RGCY 2 cut(s) 52, 220
CviQI GTAC 3 cut(s) 67, 137, 351
DdeI CTNAG 1 cut(s) 158
DpnI GATC 2 cut(s) 309, 313
DpnII GATC 2 cut(s) 307, 311
Eam1104I CTCTTC 1 cut(s) 98
EarI CTCTTC 1 cut(s) 98
Eco31I GGTCTC 1 cut(s) 187
Eco88I CYCGRG 1 cut(s) 31
Esp3I CGTCTC 2 cut(s) 75, 170
FaiI YATR 3 cut(s) 111, 168, 407
FaqI GGGAC 2 cut(s) 49, 259
FauI CCCGC 2 cut(s) 209, 235
Fnu4HI GCNGC 5 cut(s) 50, 53, 60, 63, 383
FokI GGATG 1 cut(s) 112
Fsp4HI GCNGC 5 cut(s) 50, 53, 60, 63, 383
GluI GCNGC 5 cut(s) 50, 53, 60, 63, 383
HapII CCGG 4 cut(s) 15, 56, 191, 362
HgaI GACGC 1 cut(s) 92
HinfI GANTC 3 cut(s) 29, 289, 377
HpaII CCGG 4 cut(s) 15, 56, 191, 362
HphI GGTGA 1 cut(s) 298
Hpy166II GTNNAC 3 cut(s) 69, 204, 351
Hpy8I GTNNAC 3 cut(s) 69, 204, 351
HpyAV CCTTC 1 cut(s) 89
HpyCH4III ACNGT 4 cut(s) 40, 127, 181, 250
HpyCH4IV ACGT 1 cut(s) 206
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 1 cut(s) 158
HpySE526I ACGT 1 cut(s) 206
KroI GCCGGC 1 cut(s) 55
KroNI GCCGGC 1 cut(s) 57
Kzo9I GATC 2 cut(s) 307, 311
LpnPI CCDG 8 cut(s) 28, 69, 116, 125, 204, 260, 371, 375
Lsp1109I GCAGC 2 cut(s) 39, 71
MaeII ACGT 1 cut(s) 206
MalI GATC 2 cut(s) 309, 313
MboI GATC 2 cut(s) 307, 311
MboII GAAGA 4 cut(s) 115, 284, 317, 381
MluCI AATT 3 cut(s) 230, 321, 398
MlyI GAGTC 1 cut(s) 23
MnlI CCTC 2 cut(s) 99, 358
MroNI GCCGGC 1 cut(s) 55
MseI TTAA 1 cut(s) 411
MslI CAYNNNNRTG 1 cut(s) 74
MspA1I CMGCKG 2 cut(s) 62, 385
MspI CCGG 4 cut(s) 15, 56, 191, 362
MvnI CGCG 1 cut(s) 49
MwoI GCNNNNNNNGC 1 cut(s) 71
NaeI GCCGGC 1 cut(s) 57
NdeII GATC 2 cut(s) 307, 311
NgoMIV GCCGGC 1 cut(s) 55
NlaIV GGNNCC 1 cut(s) 117
PdiI GCCGGC 1 cut(s) 57
PfeI GAWTC 2 cut(s) 289, 377
PkrI GCNGC 5 cut(s) 51, 54, 61, 64, 384
PleI GAGTC 1 cut(s) 23
PpsI GAGTC 1 cut(s) 23
PspN4I GGNNCC 1 cut(s) 117
RsaI GTAC 3 cut(s) 68, 138, 352
RsaNI GTAC 3 cut(s) 67, 137, 351
RseI CAYNNNNRTG 1 cut(s) 74
SaqAI TTAA 1 cut(s) 411
SatI GCNGC 5 cut(s) 50, 53, 60, 63, 383
Sau3AI GATC 2 cut(s) 307, 311
SchI GAGTC 1 cut(s) 23
SetI ASST 4 cut(s) 110, 159, 209, 279
SmiMI CAYNNNNRTG 1 cut(s) 74
Sse9I AATT 3 cut(s) 230, 321, 398
SsiI CCGC 6 cut(s) 49, 62, 194, 216, 242, 383
TaaI ACNGT 4 cut(s) 40, 127, 181, 250
TaiI ACGT 1 cut(s) 209
TaqI TCGA 2 cut(s) 27, 310
TasI AATT 3 cut(s) 230, 321, 398
TauI GCSGC 3 cut(s) 52, 65, 385
TfiI GAWTC 2 cut(s) 289, 377
Tru1I TTAA 1 cut(s) 411
Tru9I TTAA 1 cut(s) 411
TscAI CASTG 4 cut(s) 45, 76, 217, 255
TseI GCWGC 2 cut(s) 52, 59
TspDTI ATGAA 1 cut(s) 116
TspRI CASTG 4 cut(s) 45, 76, 217, 255
XapI RAATTY 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.