Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

2514173 .. 2516488

Gene Structure 2316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGGTTATCTCAATTCAGTTTTGTCAGCTTCAACCCAGGTCCATGCTGACGATCCGCCTGTTAGCGGCGGTGGCCTCAGTCAGAATGGAAAGTTCAGCTATGGATATGCAAGCTCTCCAGGGAAAAGATCTTCTATGGAAGACTTCTATGAGACAAGAATTGATGGTGTCGAGGGAGAAGTAGTTGGTCTTTTTGGAGTTTTCGATGGCCATGGAGGTGCACGTGCTGCTGAGTATGTCAAGCAAAATCTTTTCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044419 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

87

Amino Acids

9.06

Weight (kDa)

4.85

Isoelectric Point (pI)

36.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	56, 66, 69
AclWI	GGATC	1 cut(s)	47
AcoI	YGGCCR	1 cut(s)	208
AcvI	CACGTG	1 cut(s)	224
AfiI	CCNNNNNNNGG	1 cut(s)	65
AgsI	TTSAA	1 cut(s)	33
AjnI	CCWGG	2 cut(s)	36, 118
AluBI	AGCT	3 cut(s)	29, 99, 114
AluI	AGCT	3 cut(s)	29, 99, 114
Alw21I	GWGCWC	1 cut(s)	223
Alw26I	GTCTC	1 cut(s)	146
Alw44I	GTGCAC	1 cut(s)	219
AlwI	GGATC	1 cut(s)	47
AoxI	GGCC	2 cut(s)	73, 208
ApaLI	GTGCAC	1 cut(s)	219
ApeKI	GCWGC	1 cut(s)	227
AspS9I	GGNCC	1 cut(s)	40
AvaII	GGWCC	1 cut(s)	40
BaeGI	GKGCMC	1 cut(s)	223
BalI	TGGCCA	1 cut(s)	210
BbrPI	CACGTG	1 cut(s)	224
BbsI	GAAGAC	1 cut(s)	147
Bbv12I	GWGCWC	1 cut(s)	223
BbvI	GCAGC	1 cut(s)	214
BccI	CCATC	2 cut(s)	158, 200
BciT130I	CCWGG	2 cut(s)	38, 120
BcoDI	GTCTC	1 cut(s)	146
BglII	AGATCT	1 cut(s)	128
BisI	GCNGC	2 cut(s)	67, 228
BlsI	GCNGC	2 cut(s)	68, 229
Bme1390I	CCNGG	2 cut(s)	38, 120
Bme18I	GGWCC	1 cut(s)	40
BmgT120I	GGNCC	1 cut(s)	40
BmrFI	CCNGG	2 cut(s)	38, 120
BpiI	GAAGAC	1 cut(s)	147
BpmI	CTGGAG	1 cut(s)	102
BsaAI	YACGTR	1 cut(s)	224
BsaJI	CCNNGG	3 cut(s)	36, 119, 211
BsaXI	ACNNNNNCTCC	2 cut(s)	168, 198
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
BseBI	CCWGG	2 cut(s)	38, 120
BseDI	CCNNGG	3 cut(s)	36, 119, 211
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseMII	CTCAG	2 cut(s)	91, 222
BseSI	GKGCMC	1 cut(s)	223
BseXI	GCAGC	1 cut(s)	214
BshFI	GGCC	2 cut(s)	75, 210
BsiHKAI	GWGCWC	1 cut(s)	223
BslI	CCNNNNNNNGG	1 cut(s)	65
BsmAI	GTCTC	1 cut(s)	146
BsnI	GGCC	2 cut(s)	75, 210
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp143I	GATC	2 cut(s)	52, 128
Bsp19I	CCATGG	1 cut(s)	211
BspACI	CCGC	3 cut(s)	56, 66, 69
BspANI	GGCC	2 cut(s)	75, 210
BspCNI	CTCAG	2 cut(s)	90, 223
BspPI	GGATC	1 cut(s)	47
BssECI	CCNNGG	3 cut(s)	36, 119, 211
BssMI	GATC	2 cut(s)	52, 128
BssT1I	CCWWGG	1 cut(s)	211
Bst2UI	CCWGG	2 cut(s)	38, 120
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstBAI	YACGTR	1 cut(s)	224
BstC8I	GCNNGC	1 cut(s)	112
BstDEI	CTNAG	2 cut(s)	77, 231
BstDSI	CCRYGG	1 cut(s)	211
BstKTI	GATC	2 cut(s)	55, 131
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	2 cut(s)	52, 128
BstMWI	GCNNNNNNNGC	2 cut(s)	72, 227
BstNI	CCWGG	2 cut(s)	38, 120
BstSCI	CCNGG	2 cut(s)	36, 118
BstSLI	GKGCMC	1 cut(s)	223
BstV1I	GCAGC	1 cut(s)	214
BstV2I	GAAGAC	1 cut(s)	147
BstX2I	RGATCY	1 cut(s)	128
BstYI	RGATCY	1 cut(s)	128
BsuRI	GGCC	2 cut(s)	75, 210
BtgI	CCRYGG	1 cut(s)	211
Cac8I	GCNNGC	1 cut(s)	112
Cfr13I	GGNCC	1 cut(s)	40
CviAII	CATG	2 cut(s)	44, 212
CviJI	RGCY	5 cut(s)	29, 75, 99, 114, 210
CviKI_1	RGCY	5 cut(s)	29, 75, 99, 114, 210
DdeI	CTNAG	2 cut(s)	77, 231
DpnI	GATC	2 cut(s)	54, 130
DpnII	GATC	2 cut(s)	52, 128
EaeI	YGGCCR	1 cut(s)	208
EciI	GGCGGA	1 cut(s)	45
Eco130I	CCWWGG	1 cut(s)	211
Eco47I	GGWCC	1 cut(s)	40
Eco72I	CACGTG	1 cut(s)	224
EcoRII	CCWGG	2 cut(s)	36, 118
EcoT14I	CCWWGG	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	211
FaeI	CATG	2 cut(s)	47, 215
FaiI	YATR	7 cut(s)	45, 102, 108, 137, 150, 213, 237
FatI	CATG	2 cut(s)	43, 211
Fnu4HI	GCNGC	2 cut(s)	67, 228
Fsp4HI	GCNGC	2 cut(s)	67, 228
GluI	GCNGC	2 cut(s)	67, 228
GsuI	CTGGAG	1 cut(s)	102
HaeIII	GGCC	2 cut(s)	75, 210
Hin1II	CATG	2 cut(s)	47, 215
Hpy166II	GTNNAC	1 cut(s)	221
Hpy188I	TCNGA	1 cut(s)	84
Hpy8I	GTNNAC	1 cut(s)	221
HpyCH4IV	ACGT	1 cut(s)	223
HpyCH4V	TGCA	2 cut(s)	110, 221
HpyF10VI	GCNNNNNNNGC	2 cut(s)	72, 227
HpyF3I	CTNAG	2 cut(s)	77, 231
HpySE526I	ACGT	1 cut(s)	223
Hsp92II	CATG	2 cut(s)	47, 215
Kzo9I	GATC	2 cut(s)	52, 128
LpnPI	CCDG	5 cut(s)	23, 50, 72, 105, 132
Lsp1109I	GCAGC	1 cut(s)	214
MaeII	ACGT	1 cut(s)	223
MalI	GATC	2 cut(s)	54, 130
MboI	GATC	2 cut(s)	52, 128
MboII	GAAGA	2 cut(s)	123, 152
MflI	RGATCY	1 cut(s)	128
MhlI	GDGCHC	1 cut(s)	223
MlsI	TGGCCA	1 cut(s)	210
MluCI	AATT	2 cut(s)	13, 159
MluNI	TGGCCA	1 cut(s)	210
MnlI	CCTC	3 cut(s)	86, 166, 209
Mox20I	TGGCCA	1 cut(s)	210
MscI	TGGCCA	1 cut(s)	210
MseI	TTAA	1 cut(s)	259
MslI	CAYNNNNRTG	1 cut(s)	216
Msp20I	TGGCCA	1 cut(s)	210
MspR9I	CCNGG	2 cut(s)	38, 120
MvaI	CCWGG	2 cut(s)	38, 120
MwoI	GCNNNNNNNGC	2 cut(s)	72, 227
NcoI	CCATGG	1 cut(s)	211
NdeII	GATC	2 cut(s)	52, 128
NlaIII	CATG	2 cut(s)	47, 215
PkrI	GCNGC	2 cut(s)	68, 229
PmaCI	CACGTG	1 cut(s)	224
PmlI	CACGTG	1 cut(s)	224
Ppu21I	YACGTR	1 cut(s)	224
Psp6I	CCWGG	2 cut(s)	36, 118
PspCI	CACGTG	1 cut(s)	224
PspGI	CCWGG	2 cut(s)	36, 118
PspPI	GGNCC	1 cut(s)	40
PsuI	RGATCY	1 cut(s)	128
RseI	CAYNNNNRTG	1 cut(s)	216
SaqAI	TTAA	1 cut(s)	259
SatI	GCNGC	2 cut(s)	67, 228
Sau3AI	GATC	2 cut(s)	52, 128
Sau96I	GGNCC	1 cut(s)	40
ScrFI	CCNGG	2 cut(s)	38, 120
SduI	GDGCHC	1 cut(s)	223
SetI	ASST	6 cut(s)	31, 42, 101, 116, 220, 226
SinI	GGWCC	1 cut(s)	40
SmiMI	CAYNNNNRTG	1 cut(s)	216
Sse9I	AATT	2 cut(s)	13, 159
SsiI	CCGC	3 cut(s)	56, 66, 69
StyD4I	CCNGG	2 cut(s)	36, 118
StyI	CCWWGG	1 cut(s)	211
TaiI	ACGT	1 cut(s)	226
TaqI	TCGA	2 cut(s)	171, 204
TasI	AATT	2 cut(s)	13, 159
TauI	GCSGC	1 cut(s)	69
Tru1I	TTAA	1 cut(s)	259
Tru9I	TTAA	1 cut(s)	259
TseI	GCWGC	1 cut(s)	227
VneI	GTGCAC	1 cut(s)	219
VpaK11BI	GGWCC	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.