Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

2618309 .. 2624506

Gene Structure 6198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGAGGTACCGGTTCGCGACGTTGAAGCCGGAGAGGTCGATCCACCGCCGTTTTGGCGTCGTAGATGTCCTCGTAAACGACGAATGCGGTGCCTCTGGTGTCCTTATTCGTCCCGATGCGAATCTGCCGTATTGCGCCGTACTTGCCGAAGATGTCGTACATCTCCTCGCTCGAGATGTTGAAGGGGAGGTTGCGGACATAGAGCACGCGGTTGACTTCCGGCGGGAGGCGGGTGTTGACCTTGCGGAGGCTGATTGTCCGTGGTATATATTCATGTGTTATATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0006139 GO:0006396 GO:0006397 GO:0006457 GO:0006464 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016018 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0022607 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0033218 GO:0034641 GO:0036211 GO:0042277 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043900 GO:0043902 GO:0043903 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045069 GO:0045070 GO:0046483 GO:0046540 GO:0048518 GO:0048524 GO:0050789 GO:0050792 GO:0065003 GO:0065007 GO:0070013 GO:0071001 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:0140096 GO:1901360 GO:1901564 GO:1903900 GO:1903902 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

96

Amino Acids

10.75

Weight (kDa)

4.76

Isoelectric Point (pI)

31.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	6
AccB1I	GGYRCC	2 cut(s)	6, 89
AccII	CGCG	2 cut(s)	17, 209
AciI	CCGC	7 cut(s)	46, 87, 194, 209, 223, 230, 245
AclWI	GGATC	1 cut(s)	34
AcyI	GRCGYC	1 cut(s)	57
AfaI	GTAC	3 cut(s)	8, 141, 159
AfiI	CCNNNNNNNGG	2 cut(s)	226, 247
AgeI	ACCGGT	1 cut(s)	9
AgsI	TTSAA	2 cut(s)	25, 182
Alw21I	GWGCWC	1 cut(s)	207
AlwI	GGATC	1 cut(s)	34
Ama87I	CYCGRG	1 cut(s)	171
AsiGI	ACCGGT	1 cut(s)	9
Asp718I	GGTACC	1 cut(s)	6
AspLEI	GCGC	1 cut(s)	137
AvaI	CYCGRG	1 cut(s)	171
BanI	GGYRCC	2 cut(s)	6, 89
BarI	GAAGNNNNNNTAC	2 cut(s)	141, 173
Bbv12I	GWGCWC	1 cut(s)	207
BceAI	ACGGC	3 cut(s)	33, 112, 122
BcgI	CGANNNNNNTGC	2 cut(s)	71, 105
BglI	GCCNNNNNGGC	1 cut(s)	54
BmeT110I	CYCGRG	1 cut(s)	171
BmiI	GGNNCC	2 cut(s)	8, 91
BmsI	GCATC	1 cut(s)	106
BsaBI	GATNNNNATC	1 cut(s)	120
BsaHI	GRCGYC	1 cut(s)	57
BsaJI	CCNNGG	1 cut(s)	260
BsaWI	WCCGGW	1 cut(s)	9
Bsc4I	CCNNNNNNNGG	2 cut(s)	226, 247
Bse118I	RCCGGY	1 cut(s)	9
Bse8I	GATNNNNATC	1 cut(s)	120
BseDI	CCNNGG	1 cut(s)	260
BseJI	GATNNNNATC	1 cut(s)	120
BseLI	CCNNNNNNNGG	2 cut(s)	226, 247
BseRI	GAGGAG	1 cut(s)	155
Bsh1236I	CGCG	2 cut(s)	17, 209
BshNI	GGYRCC	2 cut(s)	6, 89
BshTI	ACCGGT	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	207
BsiHKCI	CYCGRG	1 cut(s)	171
BsiSI	CCGG	3 cut(s)	10, 29, 220
BslFI	GGGAC	1 cut(s)	96
BslI	CCNNNNNNNGG	2 cut(s)	226, 247
BsmFI	GGGAC	1 cut(s)	96
BsmI	GAATGC	1 cut(s)	89
BsoBI	CYCGRG	1 cut(s)	171
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp143I	GATC	1 cut(s)	39
Bsp68I	TCGCGA	1 cut(s)	17
BspACI	CCGC	7 cut(s)	46, 87, 194, 209, 223, 230, 245
BspFNI	CGCG	2 cut(s)	17, 209
BspLI	GGNNCC	2 cut(s)	8, 91
BspPI	GGATC	1 cut(s)	34
BspT107I	GGYRCC	2 cut(s)	6, 89
BsrFI	RCCGGY	1 cut(s)	9
BssAI	RCCGGY	1 cut(s)	9
BssECI	CCNNGG	1 cut(s)	260
BssMI	GATC	1 cut(s)	39
BssNI	GRCGYC	1 cut(s)	57
BstACI	GRCGYC	1 cut(s)	57
BstC8I	GCNNGC	1 cut(s)	207
BstDSI	CCRYGG	1 cut(s)	260
BstENI	CCTNNNNNAGG	1 cut(s)	245
BstFNI	CGCG	2 cut(s)	17, 209
BstHHI	GCGC	1 cut(s)	137
BstKTI	GATC	1 cut(s)	42
BstMBI	GATC	1 cut(s)	39
BstMWI	GCNNNNNNNGC	2 cut(s)	54, 143
BstUI	CGCG	2 cut(s)	17, 209
BtgI	CCRYGG	1 cut(s)	260
BtuMI	TCGCGA	1 cut(s)	17
Cac8I	GCNNGC	1 cut(s)	207
CfoI	GCGC	1 cut(s)	137
Cfr10I	RCCGGY	1 cut(s)	9
CseI	GACGC	1 cut(s)	46
Csp6I	GTAC	3 cut(s)	7, 140, 158
CspAI	ACCGGT	1 cut(s)	9
CviAII	CATG	1 cut(s)	274
CviJI	RGCY	2 cut(s)	28, 251
CviKI_1	RGCY	2 cut(s)	28, 251
CviQI	GTAC	3 cut(s)	7, 140, 158
DpnI	GATC	1 cut(s)	41
DpnII	GATC	1 cut(s)	39
Eco88I	CYCGRG	1 cut(s)	171
EcoNI	CCTNNNNNAGG	1 cut(s)	245
FaeI	CATG	1 cut(s)	277
FaiI	YATR	7 cut(s)	200, 267, 269, 275, 282, 284, 286
FaqI	GGGAC	1 cut(s)	96
FatI	CATG	1 cut(s)	273
FauI	CCCGC	2 cut(s)	216, 223
GlaI	GCGC	1 cut(s)	136
HapII	CCGG	3 cut(s)	10, 29, 220
HgaI	GACGC	1 cut(s)	46
HhaI	GCGC	1 cut(s)	137
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	1 cut(s)	277
Hin6I	GCGC	1 cut(s)	135
HinP1I	GCGC	1 cut(s)	135
HincII	GTYRAC	2 cut(s)	214, 238
HindII	GTYRAC	2 cut(s)	214, 238
HinfI	GANTC	1 cut(s)	121
HpaII	CCGG	3 cut(s)	10, 29, 220
Hpy166II	GTNNAC	3 cut(s)	76, 214, 238
Hpy188III	TCNNGA	3 cut(s)	16, 113, 173
Hpy8I	GTNNAC	3 cut(s)	76, 214, 238
Hpy99I	CGWCG	3 cut(s)	22, 62, 83
HpyAV	CCTTC	1 cut(s)	176
HpyCH4IV	ACGT	1 cut(s)	20
HpyF10VI	GCNNNNNNNGC	2 cut(s)	54, 143
HpySE526I	ACGT	1 cut(s)	20
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	1 cut(s)	277
HspAI	GCGC	1 cut(s)	135
KpnI	GGTACC	1 cut(s)	10
Kzo9I	GATC	1 cut(s)	39
LpnPI	CCDG	4 cut(s)	23, 42, 81, 233
LweI	GCATC	1 cut(s)	106
MaeII	ACGT	1 cut(s)	20
MalI	GATC	1 cut(s)	41
MboI	GATC	1 cut(s)	39
MboII	GAAGA	1 cut(s)	161
MhlI	GDGCHC	1 cut(s)	207
MnlI	CCTC	7 cut(s)	27, 80, 103, 176, 181, 220, 241
MspI	CCGG	3 cut(s)	10, 29, 220
Mva1269I	GAATGC	1 cut(s)	89
MvnI	CGCG	2 cut(s)	17, 209
MwoI	GCNNNNNNNGC	2 cut(s)	54, 143
NdeII	GATC	1 cut(s)	39
NlaIII	CATG	1 cut(s)	277
NlaIV	GGNNCC	2 cut(s)	8, 91
NruI	TCGCGA	1 cut(s)	17
PaeR7I	CTCGAG	1 cut(s)	171
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PctI	GAATGC	1 cut(s)	89
PfeI	GAWTC	1 cut(s)	121
PinAI	ACCGGT	1 cut(s)	9
PspN4I	GGNNCC	2 cut(s)	8, 91
RruI	TCGCGA	1 cut(s)	17
RsaI	GTAC	3 cut(s)	8, 141, 159
RsaNI	GTAC	3 cut(s)	7, 140, 158
Sau3AI	GATC	1 cut(s)	39
SduI	GDGCHC	1 cut(s)	207
SetI	ASST	5 cut(s)	8, 23, 38, 192, 243
SfaNI	GCATC	1 cut(s)	106
Sfr274I	CTCGAG	1 cut(s)	171
SlaI	CTCGAG	1 cut(s)	171
SmlI	CTYRAG	1 cut(s)	171
SmoI	CTYRAG	1 cut(s)	171
SsiI	CCGC	7 cut(s)	46, 87, 194, 209, 223, 230, 245
TaiI	ACGT	1 cut(s)	23
TaqI	TCGA	2 cut(s)	38, 172
TfiI	GAWTC	1 cut(s)	121
TspDTI	ATGAA	1 cut(s)	262
TspGWI	ACGGA	1 cut(s)	249
XagI	CCTNNNNNAGG	1 cut(s)	245
XcmI	CCANNNNNNNNNTGG	1 cut(s)	50
XhoI	CTCGAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.