pycom15g04410

Splicing factor 3B subunit 6-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Forward (+)
2641897 .. 2643333
1437 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1185 bp
ATGGAAGAAGAGAAGAAGAAGGCAAAGCTGGGCAGGTATAATTGTGTGAATTACACAATATATAGTGATAGCCAGTACTTCCAAATCCTACATGGATTCCTTTTCCTTTCCGGAAAATATATCACAAAATATTTTACCAAAATGTTTTTGAAGGCCAAACCGACTACTCTTTTTTACAATATTTTACAAAAATATGATTATATTAGTTCTTCCGAAATTCTGACGAATATTTTGCCGACCTCTAAAGTTTTAAGAGTAATTTGGAATTTTAACTTATGTTTCAGCATGGACATTATATGGATCATTCTTTTAAGCGTTCATTCCATCAAGGGTTCCGCCCAAAAAGAAATTCACCTTAATATTTTATTTATTTATTTGGAAATCACCTTACTCTTAAATTATAGTAACCAAAATAAAAAACAGGGACAAAACATGGAGTCGGATTCCGCTCCCCCCAAATTCCTCTCCCTCTTCATTCCTCTTTTATTTGAACGGTCACAATTAAATCATGTCAATATTTTGTTAAGAGAGAAGATGAGAGGATTTGAGAGATCCTACTCCAAACATAGTGACCAAAAATCATCTTACGTTATTAAAAAAAAATACAACAGAAAAATAAGGTCCGCATGTAAATTGGGTTTTCTATTTCAGCCCATTTCATTAATTCAAAGCCCACATATTTTAACAATCCGGAGCCCTAATTTAGTCACAAGAGTACCAAATCAAACAGTTCTCTCCGTCTCAAAATCCCCAATTTTCCCTCGCTTTCCCTCACTTTCCCGCCATCCAAGCACTCCCCAAACCGCCACCATGAGCACAATCAGCCTCCGCAAGGTCAACACCCGCCTCCCGCCGGAAGTCAACCGCGTGCTCTATGTCCGCAACCTCCCCTTCAACATCTCGAGCGAGGAGATGTACGACATCTTCGGCAAGTACGGCGCAATACGGCAGATTCGCATCGGGACCAACAAGGACACCAGAGGCACCGCATTCGTCGTTTACGAGGACATCTACGACGCCAAAACGGCGGTGGATCACCTTTACGGCTTCAACGTCGCGAACCGGTACCTCATTGTGCTCTACTACCAGCAGGCGAAGATGGGCAAGAAGTCCGACACGAAGAAGAAGGAGGACGAGATCGCCAGGATGCAGGAGAAGTACGGCGTCTCCACCAAAGATAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

395

Amino Acids

45.92

Weight (kDa)

9.84

Isoelectric Point (pI)

52.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_5 PF13893 286 - 370 1.9e-06 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
RRM_1 PF00076 291 - 357 2.9e-16 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 24
Acc65I GGTACC 1 cut(s) 1065
AccB1I GGYRCC 2 cut(s) 983, 1065
AccBSI CCGCTC 1 cut(s) 449
AccII CGCG 2 cut(s) 867, 1058
AccIII TCCGGA 2 cut(s) 110, 690
AclWI GGATC 3 cut(s) 308, 546, 1041
AcsI RAATTY 4 cut(s) 216, 265, 348, 458
AcyI GRCGYC 2 cut(s) 1017, 1164
AfaI GTAC 6 cut(s) 77, 717, 917, 935, 1067, 1160
AfiI CCNNNNNNNGG 2 cut(s) 832, 853
AgeI ACCGGT 1 cut(s) 1062
AgsI TTSAA 5 cut(s) 151, 491, 668, 895, 1051
AjnI CCWGG 1 cut(s) 1142
AjuI GAANNNNNNNTTGG 2 cut(s) 333, 365
AluBI AGCT 1 cut(s) 28
AluI AGCT 1 cut(s) 28
Alw21I GWGCWC 3 cut(s) 818, 873, 1080
Alw26I GTCTC 2 cut(s) 745, 1171
AlwI GGATC 3 cut(s) 308, 546, 1041
Ama87I CYCGRG 1 cut(s) 901
Aor13HI TCCGGA 2 cut(s) 110, 690
AoxI GGCC 1 cut(s) 153
ApoI RAATTY 4 cut(s) 216, 265, 348, 458
ArsI GACNNNNNNTTYG 2 cut(s) 214, 246
AseI ATTAAT 1 cut(s) 662
AsiGI ACCGGT 1 cut(s) 1062
Asp718I GGTACC 1 cut(s) 1065
AspLEI GCGC 1 cut(s) 941
AspS9I GGNCC 2 cut(s) 621, 963
AsuHPI GGTGA 3 cut(s) 344, 376, 1028
AvaI CYCGRG 1 cut(s) 901
AvaII GGWCC 2 cut(s) 621, 963
BaeI ACNNNNGTAYC 2 cut(s) 699, 732
BanI GGYRCC 2 cut(s) 983, 1065
BanII GRGCYC 1 cut(s) 698
BarI GAAGNNNNNNTAC 2 cut(s) 908, 940
Bbv12I GWGCWC 3 cut(s) 818, 873, 1080
BccI CCATC 3 cut(s) 332, 792, 1093
BceAI ACGGC 5 cut(s) 952, 962, 1041, 1060, 1177
BcgI CGANNNNNNTGC 4 cut(s) 214, 248, 973, 1007
BciT130I CCWGG 1 cut(s) 1144
BcoDI GTCTC 2 cut(s) 745, 1171
BfuAI ACCTGC 1 cut(s) 24
BglI GCCNNNNNGGC 1 cut(s) 1025
BmcAI AGTACT 1 cut(s) 77
Bme1390I CCNGG 1 cut(s) 1144
Bme18I GGWCC 2 cut(s) 621, 963
BmeT110I CYCGRG 1 cut(s) 901
BmgT120I GGNCC 2 cut(s) 621, 963
BmiI GGNNCC 5 cut(s) 334, 695, 964, 985, 1067
BmrFI CCNGG 1 cut(s) 1144
BmsI GCATC 2 cut(s) 966, 1137
BsaBI GATNNNNATC 1 cut(s) 956
BsaHI GRCGYC 2 cut(s) 1017, 1164
BsaWI WCCGGW 3 cut(s) 110, 690, 1062
BsaXI ACNNNNNCTCC 2 cut(s) 1151, 1181
Bsc4I CCNNNNNNNGG 2 cut(s) 832, 853
Bse118I RCCGGY 1 cut(s) 1062
Bse1I ACTGG 1 cut(s) 73
Bse8I GATNNNNATC 1 cut(s) 956
BseAI TCCGGA 2 cut(s) 110, 690
BseBI CCWGG 1 cut(s) 1144
BseGI GGATG 2 cut(s) 784, 1152
BseJI GATNNNNATC 1 cut(s) 956
BseLI CCNNNNNNNGG 2 cut(s) 832, 853
BseNI ACTGG 1 cut(s) 73
BseRI GAGGAG 1 cut(s) 923
BseYI CCCAGC 1 cut(s) 28
Bsh1236I CGCG 2 cut(s) 867, 1058
BshFI GGCC 1 cut(s) 155
BshNI GGYRCC 2 cut(s) 983, 1065
BshTI ACCGGT 1 cut(s) 1062
BsiHKAI GWGCWC 3 cut(s) 818, 873, 1080
BsiHKCI CYCGRG 1 cut(s) 901
BsiSI CCGG 4 cut(s) 111, 691, 854, 1063
BslFI GGGAC 2 cut(s) 438, 976
BslI CCNNNNNNNGG 2 cut(s) 832, 853
BsmAI GTCTC 2 cut(s) 745, 1171
BsmBI CGTCTC 2 cut(s) 745, 1171
BsmFI GGGAC 2 cut(s) 438, 976
BsmI GAATGC 1 cut(s) 989
BsnI GGCC 1 cut(s) 155
BsoBI CYCGRG 1 cut(s) 901
Bsp1286I GDGCHC 4 cut(s) 698, 818, 873, 1080
Bsp13I TCCGGA 2 cut(s) 110, 690
Bsp143I GATC 4 cut(s) 300, 551, 1033, 1137
Bsp68I TCGCGA 1 cut(s) 1058
BspANI GGCC 1 cut(s) 155
BspEI TCCGGA 2 cut(s) 110, 690
BspFNI CGCG 2 cut(s) 867, 1058
BspLI GGNNCC 5 cut(s) 334, 695, 964, 985, 1067
BspMI ACCTGC 1 cut(s) 24
BspPI GGATC 3 cut(s) 308, 546, 1041
BspT107I GGYRCC 2 cut(s) 983, 1065
BsrBI CCGCTC 1 cut(s) 449
BsrFI RCCGGY 1 cut(s) 1062
BsrI ACTGG 1 cut(s) 73
BssAI RCCGGY 1 cut(s) 1062
BssMI GATC 4 cut(s) 300, 551, 1033, 1137
BssNI GRCGYC 2 cut(s) 1017, 1164
Bst2UI CCWGG 1 cut(s) 1144
Bst4CI ACNGT 2 cut(s) 495, 730
Bst6I CTCTTC 2 cut(s) 3, 476
BstACI GRCGYC 2 cut(s) 1017, 1164
BstC8I GCNNGC 2 cut(s) 869, 1092
BstENI CCTNNNNNAGG 1 cut(s) 830
BstF5I GGATG 2 cut(s) 784, 1152
BstFNI CGCG 2 cut(s) 867, 1058
BstHHI GCGC 1 cut(s) 941
BstKTI GATC 4 cut(s) 303, 554, 1036, 1140
BstMAI GTCTC 2 cut(s) 745, 1171
BstMBI GATC 4 cut(s) 300, 551, 1033, 1137
BstMWI GCNNNNNNNGC 4 cut(s) 789, 822, 936, 1025
BstNI CCWGG 1 cut(s) 1144
BstNSI RCATGY 1 cut(s) 630
BstSCI CCNGG 1 cut(s) 1142
BstUI CGCG 2 cut(s) 867, 1058
BstX2I RGATCY 1 cut(s) 551
BstYI RGATCY 1 cut(s) 551
BsuRI GGCC 1 cut(s) 155
BtsCI GGATG 2 cut(s) 784, 1152
BtuMI TCGCGA 1 cut(s) 1058
BveI ACCTGC 1 cut(s) 24
Cac8I GCNNGC 2 cut(s) 869, 1092
CfoI GCGC 1 cut(s) 941
Cfr10I RCCGGY 1 cut(s) 1062
Cfr13I GGNCC 2 cut(s) 621, 963
CseI GACGC 2 cut(s) 1025, 1153
Csp6I GTAC 6 cut(s) 76, 716, 916, 934, 1066, 1159
CspAI ACCGGT 1 cut(s) 1062
CviAII CATG 6 cut(s) 92, 286, 433, 509, 627, 811
CviJI RGCY 8 cut(s) 28, 72, 155, 652, 672, 696, 825, 1047
CviKI_1 RGCY 8 cut(s) 28, 72, 155, 652, 672, 696, 825, 1047
CviQI GTAC 6 cut(s) 76, 716, 916, 934, 1066, 1159
DpnI GATC 4 cut(s) 302, 553, 1035, 1139
DpnII GATC 4 cut(s) 300, 551, 1033, 1137
Eam1104I CTCTTC 2 cut(s) 3, 476
EarI CTCTTC 2 cut(s) 3, 476
EciI GGCGGA 1 cut(s) 325
Eco24I GRGCYC 1 cut(s) 698
Eco47I GGWCC 2 cut(s) 621, 963
Eco88I CYCGRG 1 cut(s) 901
EcoNI CCTNNNNNAGG 1 cut(s) 830
EcoRII CCWGG 1 cut(s) 1142
EcoT38I GRGCYC 1 cut(s) 698
Esp3I CGTCTC 2 cut(s) 745, 1171
FaeI CATG 6 cut(s) 95, 289, 436, 512, 630, 814
FaqI GGGAC 2 cut(s) 438, 976
FatI CATG 6 cut(s) 91, 285, 432, 508, 626, 810
FauI CCCGC 3 cut(s) 788, 851, 858
FokI GGATG 2 cut(s) 771, 1159
FriOI GRGCYC 1 cut(s) 698
GlaI GCGC 1 cut(s) 940
GsaI CCCAGC 1 cut(s) 32
HaeIII GGCC 1 cut(s) 155
HapII CCGG 4 cut(s) 111, 691, 854, 1063
HgaI GACGC 2 cut(s) 1025, 1153
HhaI GCGC 1 cut(s) 941
Hin1I GRCGYC 2 cut(s) 1017, 1164
Hin1II CATG 6 cut(s) 95, 289, 436, 512, 630, 814
Hin6I GCGC 1 cut(s) 939
HinP1I GCGC 1 cut(s) 939
HincII GTYRAC 2 cut(s) 838, 862
HindII GTYRAC 2 cut(s) 838, 862
HinfI GANTC 4 cut(s) 96, 437, 443, 952
HpaII CCGG 4 cut(s) 111, 691, 854, 1063
HphI GGTGA 3 cut(s) 344, 376, 1028
Hpy166II GTNNAC 3 cut(s) 838, 862, 1000
Hpy188I TCNGA 4 cut(s) 214, 222, 442, 1114
Hpy188III TCNNGA 5 cut(s) 111, 691, 901, 961, 1057
Hpy8I GTNNAC 3 cut(s) 838, 862, 1000
Hpy99I CGWCG 3 cut(s) 998, 1019, 1058
HpyAV CCTTC 4 cut(s) 13, 145, 901, 1120
HpyCH4III ACNGT 2 cut(s) 495, 730
HpyCH4IV ACGT 2 cut(s) 588, 1053
HpyCH4V TGCA 1 cut(s) 1150
HpyF10VI GCNNNNNNNGC 4 cut(s) 789, 822, 936, 1025
HpySE526I ACGT 2 cut(s) 588, 1053
Hsp92I GRCGYC 2 cut(s) 1017, 1164
Hsp92II CATG 6 cut(s) 95, 289, 436, 512, 630, 814
HspAI GCGC 1 cut(s) 939
Kpn2I TCCGGA 2 cut(s) 110, 690
KpnI GGTACC 1 cut(s) 1069
Kzo9I GATC 4 cut(s) 300, 551, 1033, 1137
LmnI GCTCC 2 cut(s) 454, 693
LweI GCATC 2 cut(s) 966, 1137
MaeII ACGT 2 cut(s) 588, 1053
MaeIII GTNAC 4 cut(s) 404, 495, 569, 706
MalI GATC 4 cut(s) 302, 553, 1035, 1139
MbiI CCGCTC 1 cut(s) 449
MboI GATC 4 cut(s) 300, 551, 1033, 1137
MflI RGATCY 1 cut(s) 551
MhlI GDGCHC 4 cut(s) 698, 818, 873, 1080
MlyI GAGTC 1 cut(s) 446
MmeI TCCRAC 2 cut(s) 420, 1137
MroI TCCGGA 2 cut(s) 110, 690
MspI CCGG 4 cut(s) 111, 691, 854, 1063
MspR9I CCNGG 1 cut(s) 1144
Mva1269I GAATGC 1 cut(s) 989
MvaI CCWGG 1 cut(s) 1144
MvnI CGCG 2 cut(s) 867, 1058
MwoI GCNNNNNNNGC 4 cut(s) 789, 822, 936, 1025
NdeII GATC 4 cut(s) 300, 551, 1033, 1137
NlaIII CATG 6 cut(s) 95, 289, 436, 512, 630, 814
NlaIV GGNNCC 5 cut(s) 334, 695, 964, 985, 1067
NmuCI GTSAC 3 cut(s) 495, 569, 706
NruI TCGCGA 1 cut(s) 1058
NspI RCATGY 1 cut(s) 630
PaeR7I CTCGAG 1 cut(s) 901
PcsI WCGNNNNNNNCGW 2 cut(s) 999, 1050
PctI GAATGC 1 cut(s) 989
PfeI GAWTC 3 cut(s) 96, 443, 952
PinAI ACCGGT 1 cut(s) 1062
PleI GAGTC 1 cut(s) 445
PpsI GAGTC 1 cut(s) 445
PshBI ATTAAT 1 cut(s) 662
Psp6I CCWGG 1 cut(s) 1142
PspFI CCCAGC 1 cut(s) 28
PspGI CCWGG 1 cut(s) 1142
PspN4I GGNNCC 5 cut(s) 334, 695, 964, 985, 1067
PspPI GGNCC 2 cut(s) 621, 963
PsuI RGATCY 1 cut(s) 551
RruI TCGCGA 1 cut(s) 1058
RsaI GTAC 6 cut(s) 77, 717, 917, 935, 1067, 1160
RsaNI GTAC 6 cut(s) 76, 716, 916, 934, 1066, 1159
Sau3AI GATC 4 cut(s) 300, 551, 1033, 1137
Sau96I GGNCC 2 cut(s) 621, 963
ScaI AGTACT 1 cut(s) 77
SchI GAGTC 1 cut(s) 446
ScrFI CCNGG 1 cut(s) 1144
SduI GDGCHC 4 cut(s) 698, 818, 873, 1080
SfaNI GCATC 2 cut(s) 966, 1137
Sfr274I CTCGAG 1 cut(s) 901
SinI GGWCC 2 cut(s) 621, 963
SlaI CTCGAG 1 cut(s) 901
SmlI CTYRAG 1 cut(s) 901
SmoI CTYRAG 1 cut(s) 901
SspI AATATT 5 cut(s) 131, 181, 229, 361, 517
StyD4I CCNGG 1 cut(s) 1142
TaaI ACNGT 2 cut(s) 495, 730
TaiI ACGT 2 cut(s) 591, 1056
TaqI TCGA 1 cut(s) 902
TatI WGTACW 1 cut(s) 75
TfiI GAWTC 3 cut(s) 96, 443, 952
TseFI GTSAC 3 cut(s) 495, 569, 706
Tsp45I GTSAC 3 cut(s) 495, 569, 706
TspDTI ATGAA 3 cut(s) 308, 463, 648
TspGWI ACGGA 1 cut(s) 727
VpaK11BI GGWCC 2 cut(s) 621, 963
VspI ATTAAT 1 cut(s) 662
XagI CCTNNNNNAGG 1 cut(s) 830
XapI RAATTY 4 cut(s) 216, 265, 348, 458
XceI RCATGY 1 cut(s) 630
XcmI CCANNNNNNNNNTGG 2 cut(s) 89, 1027
XhoI CTCGAG 1 cut(s) 901
ZrmI AGTACT 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.