pycom15g04650

breast cancer carboxy-terminal domain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Forward (+)
2760471 .. 2761926
1456 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1005 bp
ATGTGGAACTTGAAGAATTCATGTGCAAAACTAACATTTCTCGCATGTATTTGTAGCCCCAAATGTTATTGTGACATTTCAGATTCGGAAAAACCCAAAACCCATACTAAAACAAAATCACAGGTCCAATCGAGGAAACATAAAGCGTTTGACCAAAGCATGTCTGGCACTTTGAATTCACTTGCATTGCAACTCCCGTTTCTCTTCACTTTTTTGTTAAAAAAGGCAAATAAATCAAAATCTCTCTTCATTCAGTCATTCCATTTGTTTCGTTTTCGAAAGCGAATTTACTTGTGCAGTCTCCAAACCAAAATTCACTCTTTGTCTGCAGCCTCTCTGAATCTCTGTCTCCCTTCCTCTCACTGCCTGCCACTTTCTTTGCTTTATCTTCTTCCCTTTCCAATAAGATTCTTATTCCTCCATCTCTGCAAACTTTTCCTCTTGTTTTTTCTTCCATTTCTGCTTCTGGGTCGCATCATTTCTTCCATTTCTCAATTGGGTTTGATCAATCTTCACTTCATTAAGAAACCCTTTTCTTTTCCCGCGCGCCAATCAAATTCTTGTTCGTTGTCCTTTTCTTTAATTACCCTTTTGAGATTTTTCAGAGTTTTCTCTGATTTCATGGAACGCTGCGGAAAGTCGAATGGAGACTTGGTGGGTAATGGTGAATTTGTAATGGGGGGCGGTGGCGGTGGCGGTGGGAGAGTGGAAGTGGTGAAGAGCCACGGTTGCTCTCGGCTGTCTGTTGGGTTACCATCTCAACCGCCTTCCTCTAAAGCTCTGCAACCATTTGAGCCTGCATCTCCGACCGCATCCCCTATTGGATCGGAGGCGGTGGCTCGATCAGGCGGCGGACCCTTCGCCAGCCTTGTTATCTGCGTTACTGGTCTATCCAAGGAAGCAAGGAAACAAGTCAAGGAAGCGACTGAGAGATTAGGCGGCCAGTACAGCCCTCAGTTGCATCCTCAATGTACTCATTTGGTGCTTCGGCGGACACAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

335

Amino Acids

36.84

Weight (kDa)

9.95

Isoelectric Point (pI)

57.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRCT PF00533 285 - 329 8.4e-07 BRCA1 C Terminus (BRCT) domain
PTCB-BRCT PF12738 290 - 332 1.1e-08 twin BRCT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 545, 547
AclWI GGATC 1 cut(s) 832
AcoI YGGCCR 1 cut(s) 940
AcsI RAATTY 6 cut(s) 16, 175, 285, 312, 556, 668
AfaI GTAC 2 cut(s) 947, 973
AgsI TTSAA 2 cut(s) 13, 175
AjuI GAANNNNNNNTTGG 4 cut(s) 297, 329, 635, 667
AluBI AGCT 1 cut(s) 779
AluI AGCT 1 cut(s) 779
Alw26I GTCTC 3 cut(s) 305, 353, 642
AlwI GGATC 1 cut(s) 832
AoxI GGCC 1 cut(s) 940
ApeKI GCWGC 2 cut(s) 329, 630
ApoI RAATTY 6 cut(s) 16, 175, 285, 312, 556, 668
AspLEI GCGC 2 cut(s) 547, 549
AspS9I GGNCC 2 cut(s) 124, 854
AsuHPI GGTGA 2 cut(s) 677, 727
AsuII TTCGAA 1 cut(s) 277
AvaII GGWCC 2 cut(s) 124, 854
BbvI GCAGC 2 cut(s) 341, 617
BccI CCATC 2 cut(s) 429, 763
BclI TGATCA 1 cut(s) 504
BcoDI GTCTC 3 cut(s) 305, 353, 642
BfmI CTRYAG 1 cut(s) 327
BisI GCNGC 4 cut(s) 330, 631, 850, 940
BlsI GCNGC 4 cut(s) 331, 632, 851, 941
Bme18I GGWCC 2 cut(s) 124, 854
BmgT120I GGNCC 2 cut(s) 124, 854
BmiI GGNNCC 1 cut(s) 856
BmsI GCATC 4 cut(s) 483, 809, 821, 970
Bpu14I TTCGAA 1 cut(s) 277
BsaJI CCNNGG 2 cut(s) 724, 894
BsaXI ACNNNNNCTCC 2 cut(s) 639, 669
Bse1I ACTGG 2 cut(s) 889, 943
Bse3DI GCAATG 1 cut(s) 185
BseDI CCNNGG 2 cut(s) 724, 894
BseGI GGATG 2 cut(s) 812, 961
BseMI GCAATG 1 cut(s) 185
BseMII CTCAG 2 cut(s) 918, 968
BseNI ACTGG 2 cut(s) 889, 943
BsePI GCGCGC 1 cut(s) 545
BseXI GCAGC 2 cut(s) 341, 617
BsgI GTGCAG 1 cut(s) 316
Bsh1236I CGCG 2 cut(s) 545, 547
Bsh1285I CGRYCG 1 cut(s) 810
BshFI GGCC 1 cut(s) 942
BsiEI CGRYCG 1 cut(s) 810
BsmAI GTCTC 3 cut(s) 305, 353, 642
BsnI GGCC 1 cut(s) 942
Bsp119I TTCGAA 1 cut(s) 277
Bsp143I GATC 3 cut(s) 504, 824, 842
BspANI GGCC 1 cut(s) 942
BspCNI CTCAG 2 cut(s) 919, 967
BspFNI CGCG 2 cut(s) 545, 547
BspLI GGNNCC 1 cut(s) 856
BspMAI CTGCAG 1 cut(s) 331
BspPI GGATC 1 cut(s) 832
BspQI GCTCTTC 1 cut(s) 713
BspT104I TTCGAA 1 cut(s) 277
BsrDI GCAATG 1 cut(s) 185
BsrI ACTGG 2 cut(s) 889, 943
BssECI CCNNGG 2 cut(s) 724, 894
BssHII GCGCGC 1 cut(s) 545
BssMI GATC 3 cut(s) 504, 824, 842
BssT1I CCWWGG 1 cut(s) 894
Bst4CI ACNGT 1 cut(s) 728
Bst6I CTCTTC 3 cut(s) 209, 251, 713
BstBI TTCGAA 1 cut(s) 277
BstC8I GCNNGC 4 cut(s) 368, 547, 798, 865
BstDEI CTNAG 2 cut(s) 927, 954
BstDSI CCRYGG 1 cut(s) 724
BstEII GGTNACC 1 cut(s) 750
BstF5I GGATG 2 cut(s) 812, 961
BstFNI CGCG 2 cut(s) 545, 547
BstHHI GCGC 2 cut(s) 547, 549
BstKTI GATC 3 cut(s) 507, 827, 845
BstMAI GTCTC 3 cut(s) 305, 353, 642
BstMBI GATC 3 cut(s) 504, 824, 842
BstMCI CGRYCG 1 cut(s) 810
BstMWI GCNNNNNNNGC 3 cut(s) 165, 729, 948
BstNSI RCATGY 2 cut(s) 48, 163
BstPI GGTNACC 1 cut(s) 750
BstSFI CTRYAG 1 cut(s) 327
BstUI CGCG 2 cut(s) 545, 547
BstV1I GCAGC 2 cut(s) 341, 617
BsuRI GGCC 1 cut(s) 942
BtgI CCRYGG 1 cut(s) 724
BtsCI GGATG 2 cut(s) 812, 961
BtsI GCAGTG 1 cut(s) 361
BtsIMutI CAGTG 1 cut(s) 361
Cac8I GCNNGC 4 cut(s) 368, 547, 798, 865
CfoI GCGC 2 cut(s) 547, 549
Cfr13I GGNCC 2 cut(s) 124, 854
Csp6I GTAC 2 cut(s) 946, 972
CspCI CAANNNNNGTGG 2 cut(s) 360, 395
CviAII CATG 4 cut(s) 21, 45, 160, 622
CviQI GTAC 2 cut(s) 946, 972
DdeI CTNAG 2 cut(s) 927, 954
DpnI GATC 3 cut(s) 506, 826, 844
DpnII GATC 3 cut(s) 504, 824, 842
EaeI YGGCCR 1 cut(s) 940
Eam1104I CTCTTC 3 cut(s) 209, 251, 713
EarI CTCTTC 3 cut(s) 209, 251, 713
EciI GGCGGA 1 cut(s) 867
Eco130I CCWWGG 1 cut(s) 894
Eco47I GGWCC 2 cut(s) 124, 854
Eco91I GGTNACC 1 cut(s) 750
EcoO65I GGTNACC 1 cut(s) 750
EcoRI GAATTC 2 cut(s) 16, 175
EcoT14I CCWWGG 1 cut(s) 894
ErhI CCWWGG 1 cut(s) 894
FaeI CATG 4 cut(s) 24, 48, 163, 625
FaiI YATR 6 cut(s) 22, 46, 105, 141, 161, 623
FalI AAGNNNNNCTT 2 cut(s) 515, 547
FatI CATG 4 cut(s) 20, 44, 159, 621
FauI CCCGC 1 cut(s) 550
FbaI TGATCA 1 cut(s) 504
Fnu4HI GCNGC 4 cut(s) 330, 631, 850, 940
FokI GGATG 2 cut(s) 799, 948
Fsp4HI GCNGC 4 cut(s) 330, 631, 850, 940
GlaI GCGC 2 cut(s) 546, 548
GluI GCNGC 4 cut(s) 330, 631, 850, 940
HaeIII GGCC 1 cut(s) 942
HhaI GCGC 2 cut(s) 547, 549
Hin1II CATG 4 cut(s) 24, 48, 163, 625
Hin6I GCGC 2 cut(s) 545, 547
HinP1I GCGC 2 cut(s) 545, 547
HinfI GANTC 3 cut(s) 83, 340, 408
HphI GGTGA 2 cut(s) 677, 727
Hpy188I TCNGA 7 cut(s) 82, 88, 339, 605, 616, 807, 829
HpyAV CCTTC 3 cut(s) 363, 777, 868
HpyCH4III ACNGT 1 cut(s) 728
HpyCH4V TGCA 9 cut(s) 26, 185, 190, 297, 329, 429, 784, 800, 961
HpyF10VI GCNNNNNNNGC 3 cut(s) 165, 729, 948
HpyF3I CTNAG 2 cut(s) 927, 954
Hsp92II CATG 4 cut(s) 24, 48, 163, 625
HspAI GCGC 2 cut(s) 545, 547
Ksp22I TGATCA 1 cut(s) 504
Kzo9I GATC 3 cut(s) 504, 824, 842
LguI GCTCTTC 1 cut(s) 713
LpnPI CCDG 9 cut(s) 107, 150, 380, 452, 810, 831, 870, 877, 956
Lsp1109I GCAGC 2 cut(s) 341, 617
LweI GCATC 4 cut(s) 483, 809, 821, 970
MaeIII GTNAC 3 cut(s) 71, 750, 880
MalI GATC 3 cut(s) 506, 826, 844
MboI GATC 3 cut(s) 504, 824, 842
MboII GAAGA 9 cut(s) 25, 196, 238, 380, 383, 443, 474, 503, 730
MfeI CAATTG 1 cut(s) 494
MluCI AATT 8 cut(s) 16, 175, 285, 312, 494, 556, 582, 668
MmeI TCCRAC 1 cut(s) 830
MnlI CCTC 9 cut(s) 126, 343, 367, 428, 449, 781, 823, 963, 975
MseI TTAA 3 cut(s) 218, 522, 581
MunI CAATTG 1 cut(s) 494
MvnI CGCG 2 cut(s) 545, 547
MwoI GCNNNNNNNGC 3 cut(s) 165, 729, 948
NdeII GATC 3 cut(s) 504, 824, 842
NlaIII CATG 4 cut(s) 24, 48, 163, 625
NlaIV GGNNCC 1 cut(s) 856
NmeAIII GCCGAG 1 cut(s) 715
NmuCI GTSAC 1 cut(s) 71
NspI RCATGY 2 cut(s) 48, 163
NspV TTCGAA 1 cut(s) 277
PauI GCGCGC 1 cut(s) 545
PciSI GCTCTTC 1 cut(s) 713
PfeI GAWTC 3 cut(s) 83, 340, 408
PkrI GCNGC 4 cut(s) 331, 632, 851, 941
PspEI GGTNACC 1 cut(s) 750
PspN4I GGNNCC 1 cut(s) 856
PspPI GGNCC 2 cut(s) 124, 854
PstI CTGCAG 1 cut(s) 331
PteI GCGCGC 1 cut(s) 545
RsaI GTAC 2 cut(s) 947, 973
RsaNI GTAC 2 cut(s) 946, 972
SapI GCTCTTC 1 cut(s) 713
SaqAI TTAA 3 cut(s) 218, 522, 581
SatI GCNGC 4 cut(s) 330, 631, 850, 940
Sau3AI GATC 3 cut(s) 504, 824, 842
Sau96I GGNCC 2 cut(s) 124, 854
SetI ASST 2 cut(s) 126, 781
SfaNI GCATC 4 cut(s) 483, 809, 821, 970
SfcI CTRYAG 1 cut(s) 327
SfuI TTCGAA 1 cut(s) 277
SinI GGWCC 2 cut(s) 124, 854
Sse9I AATT 8 cut(s) 16, 175, 285, 312, 494, 556, 582, 668
StyI CCWWGG 1 cut(s) 894
TaaI ACNGT 1 cut(s) 728
TaqI TCGA 4 cut(s) 131, 277, 641, 841
TasI AATT 8 cut(s) 16, 175, 285, 312, 494, 556, 582, 668
TatI WGTACW 2 cut(s) 945, 971
TauI GCSGC 2 cut(s) 852, 942
TfiI GAWTC 3 cut(s) 83, 340, 408
Tru1I TTAA 3 cut(s) 218, 522, 581
Tru9I TTAA 3 cut(s) 218, 522, 581
TscAI CASTG 1 cut(s) 368
TseFI GTSAC 1 cut(s) 71
TseI GCWGC 2 cut(s) 329, 630
Tsp45I GTSAC 1 cut(s) 71
TspDTI ATGAA 4 cut(s) 9, 238, 508, 610
TspRI CASTG 1 cut(s) 368
VpaK11BI GGWCC 2 cut(s) 124, 854
XapI RAATTY 6 cut(s) 16, 175, 285, 312, 556, 668
XceI RCATGY 2 cut(s) 48, 163
XcmI CCANNNNNNNNNTGG 2 cut(s) 161, 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.