Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

3073679 .. 3074089

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCCTACTCAAAAGCTCGAGCAGTTCAACAGTTAGTAAAGTTGAATTTCAACTTTGGTTTTGGGTTTGCAGGCGATAGATATTTAAAGCCATGCATCATTCCAGAACCAAAAGTGATGTTTATTCCCCGAACAAAAGACGACGAATGCCTCATATTAGCGAGTGATGGTTTATGGGACGTTATGTCAAATGAAGAAGTGTGTGACCTTGCTCGGAGACGAATACTCCTCTGGCACAAGAAGAATGGTGCTGATGGACTTCCGCTGGAAAGAGGCGAAGGAATTGATCCCGCTGCCCAGGCAGCTGCGGAGTTTCTTTCGAACCGTGCTCTTCTCAAAGGAAGTAAGGACAACATAACTGTGATTGTGGTGGATCTGAAAGCTCAAAGGAAGTTTAAAAGCAAAACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010035 GO:0010646 GO:0010648 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0022622 GO:0023051 GO:0023057 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04931 map04016 map04075 map04931

Pfam Domains

Protein Families

PP2C

Protein Analysis

137

Amino Acids

15.22

Weight (kDa)

9.22

Isoelectric Point (pI)

34.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	25 - 119	1.8e-18	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	263, 291, 308
AclWI	GGATC	2 cut(s)	281, 381
AcsI	RAATTY	1 cut(s)	46
AgsI	TTSAA	3 cut(s)	29, 46, 52
AhdI	GACNNNNNGTC	1 cut(s)	184
AjnI	CCWGG	1 cut(s)	297
AluBI	AGCT	3 cut(s)	17, 305, 383
AluI	AGCT	3 cut(s)	17, 305, 383
Alw21I	GWGCWC	1 cut(s)	331
Alw26I	GTCTC	1 cut(s)	211
AlwI	GGATC	2 cut(s)	281, 381
Ama87I	CYCGRG	1 cut(s)	18
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	293, 302, 305
ApoI	RAATTY	1 cut(s)	46
AsuII	TTCGAA	1 cut(s)	320
AvaI	CYCGRG	1 cut(s)	18
Bbv12I	GWGCWC	1 cut(s)	331
BbvI	GCAGC	3 cut(s)	280, 292, 314
BccI	CCATC	2 cut(s)	161, 248
BciT130I	CCWGG	1 cut(s)	299
BcoDI	GTCTC	1 cut(s)	211
BisI	GCNGC	3 cut(s)	294, 303, 306
BlsI	GCNGC	3 cut(s)	295, 304, 307
Bme1390I	CCNGG	1 cut(s)	299
BmeRI	GACNNNNNGTC	1 cut(s)	184
BmeT110I	CYCGRG	1 cut(s)	18
BmrFI	CCNGG	1 cut(s)	299
BmsI	GCATC	1 cut(s)	105
Bpu14I	TTCGAA	1 cut(s)	320
BsaJI	CCNNGG	1 cut(s)	297
BsaXI	ACNNNNNCTCC	2 cut(s)	210, 240
BseBI	CCWGG	1 cut(s)	299
BseDI	CCNNGG	1 cut(s)	297
BseRI	GAGGAG	1 cut(s)	218
BseXI	GCAGC	3 cut(s)	280, 292, 314
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	331
BsiHKCI	CYCGRG	1 cut(s)	18
BslFI	GGGAC	1 cut(s)	191
BsmAI	GTCTC	1 cut(s)	211
BsmBI	CGTCTC	1 cut(s)	211
BsmFI	GGGAC	1 cut(s)	191
BsmI	GAATGC	1 cut(s)	152
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	18
Bsp119I	TTCGAA	1 cut(s)	320
Bsp1286I	GDGCHC	1 cut(s)	331
Bsp143I	GATC	2 cut(s)	286, 373
BspACI	CCGC	3 cut(s)	263, 291, 308
BspANI	GGCC	1 cut(s)	5
BspPI	GGATC	2 cut(s)	281, 381
BspQI	GCTCTTC	1 cut(s)	336
BspT104I	TTCGAA	1 cut(s)	320
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	2 cut(s)	286, 373
Bst2UI	CCWGG	1 cut(s)	299
Bst4CI	ACNGT	3 cut(s)	33, 326, 361
Bst6I	CTCTTC	1 cut(s)	336
BstBI	TTCGAA	1 cut(s)	320
BstC8I	GCNNGC	1 cut(s)	73
BstKTI	GATC	2 cut(s)	289, 376
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	2 cut(s)	286, 373
BstMWI	GCNNNNNNNGC	2 cut(s)	299, 302
BstNI	CCWGG	1 cut(s)	299
BstSCI	CCNGG	1 cut(s)	297
BstV1I	GCAGC	3 cut(s)	280, 292, 314
BstX2I	RGATCY	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	373
BsuRI	GGCC	1 cut(s)	5
Cac8I	GCNNGC	1 cut(s)	73
CviAII	CATG	1 cut(s)	93
CviJI	RGCY	5 cut(s)	5, 17, 91, 305, 383
CviKI_1	RGCY	5 cut(s)	5, 17, 91, 305, 383
DpnI	GATC	2 cut(s)	288, 375
DpnII	GATC	2 cut(s)	286, 373
DraI	TTTAAA	2 cut(s)	87, 397
DriI	GACNNNNNGTC	1 cut(s)	184
Eam1104I	CTCTTC	1 cut(s)	336
Eam1105I	GACNNNNNGTC	1 cut(s)	184
EarI	CTCTTC	1 cut(s)	336
Eco88I	CYCGRG	1 cut(s)	18
EcoRII	CCWGG	1 cut(s)	297
EcoT22I	ATGCAT	1 cut(s)	98
Esp3I	CGTCTC	1 cut(s)	211
FaeI	CATG	1 cut(s)	96
FaiI	YATR	5 cut(s)	94, 155, 175, 185, 356
FaqI	GGGAC	1 cut(s)	191
FatI	CATG	1 cut(s)	92
FauI	CCCGC	1 cut(s)	298
Fnu4HI	GCNGC	3 cut(s)	294, 303, 306
Fsp4HI	GCNGC	3 cut(s)	294, 303, 306
GluI	GCNGC	3 cut(s)	294, 303, 306
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	96
Hpy188I	TCNGA	2 cut(s)	216, 378
Hpy188III	TCNNGA	1 cut(s)	104
Hpy99I	CGWCG	1 cut(s)	146
HpyAV	CCTTC	1 cut(s)	272
HpyCH4III	ACNGT	3 cut(s)	33, 326, 361
HpyCH4IV	ACGT	2 cut(s)	180, 407
HpyCH4V	TGCA	2 cut(s)	71, 96
HpyF10VI	GCNNNNNNNGC	2 cut(s)	299, 302
HpySE526I	ACGT	2 cut(s)	180, 407
Hsp92II	CATG	1 cut(s)	96
Kzo9I	GATC	2 cut(s)	286, 373
LguI	GCTCTTC	1 cut(s)	336
LpnPI	CCDG	6 cut(s)	57, 117, 217, 251, 284, 311
Lsp1109I	GCAGC	3 cut(s)	280, 292, 314
LweI	GCATC	1 cut(s)	105
MaeII	ACGT	2 cut(s)	180, 407
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	2 cut(s)	288, 375
MboI	GATC	2 cut(s)	286, 373
MboII	GAAGA	3 cut(s)	206, 253, 323
MflI	RGATCY	1 cut(s)	373
MhlI	GDGCHC	1 cut(s)	331
MluCI	AATT	2 cut(s)	46, 282
MnlI	CCTC	3 cut(s)	161, 239, 266
Mph1103I	ATGCAT	1 cut(s)	98
MseI	TTAA	2 cut(s)	86, 396
MslI	CAYNNNNRTG	1 cut(s)	359
MspA1I	CMGCKG	3 cut(s)	265, 293, 305
MspR9I	CCNGG	1 cut(s)	299
Mva1269I	GAATGC	1 cut(s)	152
MvaI	CCWGG	1 cut(s)	299
MwoI	GCNNNNNNNGC	2 cut(s)	299, 302
NdeII	GATC	2 cut(s)	286, 373
NlaIII	CATG	1 cut(s)	96
NmuCI	GTSAC	1 cut(s)	203
NsiI	ATGCAT	1 cut(s)	98
NspV	TTCGAA	1 cut(s)	320
PaeR7I	CTCGAG	1 cut(s)	18
PciSI	GCTCTTC	1 cut(s)	336
PctI	GAATGC	1 cut(s)	152
PkrI	GCNGC	3 cut(s)	295, 304, 307
Psp6I	CCWGG	1 cut(s)	297
PspGI	CCWGG	1 cut(s)	297
PspXI	VCTCGAGB	1 cut(s)	18
PsuI	RGATCY	1 cut(s)	373
PvuII	CAGCTG	1 cut(s)	305
RseI	CAYNNNNRTG	1 cut(s)	359
SapI	GCTCTTC	1 cut(s)	336
SaqAI	TTAA	2 cut(s)	86, 396
SatI	GCNGC	3 cut(s)	294, 303, 306
Sau3AI	GATC	2 cut(s)	286, 373
ScrFI	CCNGG	1 cut(s)	299
SduI	GDGCHC	1 cut(s)	331
SetI	ASST	6 cut(s)	19, 183, 210, 307, 385, 410
SfaNI	GCATC	1 cut(s)	105
Sfr274I	CTCGAG	1 cut(s)	18
SfuI	TTCGAA	1 cut(s)	320
SlaI	CTCGAG	1 cut(s)	18
SmiMI	CAYNNNNRTG	1 cut(s)	359
SmlI	CTYRAG	1 cut(s)	18
SmoI	CTYRAG	1 cut(s)	18
Sse9I	AATT	2 cut(s)	46, 282
SsiI	CCGC	3 cut(s)	263, 291, 308
StyD4I	CCNGG	1 cut(s)	297
TaaI	ACNGT	3 cut(s)	33, 326, 361
TaiI	ACGT	2 cut(s)	183, 410
TaqI	TCGA	2 cut(s)	19, 320
TasI	AATT	2 cut(s)	46, 282
Tru1I	TTAA	2 cut(s)	86, 396
Tru9I	TTAA	2 cut(s)	86, 396
TseFI	GTSAC	1 cut(s)	203
TseI	GCWGC	3 cut(s)	293, 302, 305
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	1 cut(s)	207
XapI	RAATTY	1 cut(s)	46
XhoI	CTCGAG	1 cut(s)	18
Zsp2I	ATGCAT	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.