pycom15g05440

glutaredoxin-C6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Forward (+)
3245917 .. 3247197
1281 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 855 bp
ATGAATCGTTATTTTTCAACAAGCATGCTGTTAGACACACCTCTTCCCCCACCCCTCTATCTCTCCTTTTATATTTATAAAACCCCCCCCCCCCCTCTCACACCCACCACTTACCCTTCCCACCTCAATTTTCCCCTTGCCGCCCCCCCCCCCCCCGTTGACATCATATTTCCTCACCACCTCTCTCCATTTCTCCCTCAATTCACCACCGCTCATATTCCTCTGGATTCCCCGACGATGCAAGGCCTACGGCGTTGCTCCAACGACGTCGTCAACCTCGGCCTATCCCCCGCCCCAACCCCGCCCTCCCCACCCCCTCCCCCTCCCCCAAACCATTCTTCTTCCACCCTCTCCATCGACGTCGCCGAGTCCGCTGAGACCCGCATCCGCCGCCTCATCTCCGAGCACCCCGTCATCATCTTCAGCCGAAACTCCTGCTGCATGTGCCATGTCATGAAGAAGCTCCTCGCCACTCTTGGCGTCCACCCCACCGTCATCGAATTGGACGATGACGAGATCGCTGCTCTCCCCCACGACGACCAAGAACAACAACAGGCTTGTAATACCCCGCCCGCCGTCTTCATCGGAGGCACGTGCGTCGGCGGCCTCGAGTCCCTCGTCGCCCTCCACCTCAGCGGCCACCTCGTCCCTAAACTCGTCCAAGTCGGTGCCCTCTGGTCTCTGTTTTATAGTTTTATTATTGTAATTGTTGGCCATGAACATGTGCTAATTATTATTATCAATATTTTTCCAAAATTAGGAGGAATAGAGAGCTTGTTTTCAAGATTTGTAGTAGCATGCAGCACAAGATGCACAAGATCTCGATGTGACAGTATTCACGCAAATATGTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

285

Amino Acids

31.07

Weight (kDa)

6.37

Isoelectric Point (pI)

68.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 138 - 200 1.2e-09 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 78, 853
AatII GACGTC 2 cut(s) 270, 363
AccB1I GGYRCC 1 cut(s) 668
AccBSI CCGCTC 1 cut(s) 212
AcoI YGGCCR 2 cut(s) 637, 712
AcuI CTGAAG 1 cut(s) 406
AcvI CACGTG 1 cut(s) 594
AcyI GRCGYC 3 cut(s) 267, 360, 480
AfiI CCNNNNNNNGG 1 cut(s) 758
AflIII ACRYGT 1 cut(s) 721
AgsI TTSAA 2 cut(s) 18, 783
AjuI GAANNNNNNNTTGG 2 cut(s) 322, 354
AluBI AGCT 2 cut(s) 463, 774
AluI AGCT 2 cut(s) 463, 774
Alw21I GWGCWC 1 cut(s) 408
Alw26I GTCTC 2 cut(s) 371, 684
Ama87I CYCGRG 1 cut(s) 608
AoxI GGCC 5 cut(s) 244, 280, 604, 637, 712
ApeKI GCWGC 3 cut(s) 438, 521, 801
AsuHPI GGTGA 2 cut(s) 167, 196
AvaI CYCGRG 1 cut(s) 608
BaeGI GKGCMC 1 cut(s) 673
BalI TGGCCA 1 cut(s) 714
BanI GGYRCC 1 cut(s) 668
BbrPI CACGTG 1 cut(s) 594
BbsI GAAGAC 1 cut(s) 571
Bbv12I GWGCWC 1 cut(s) 408
BbvCI CCTCAGC 1 cut(s) 632
BbvI GCAGC 3 cut(s) 425, 508, 813
BccI CCATC 1 cut(s) 362
BceAI ACGGC 2 cut(s) 266, 560
BcgI CGANNNNNNTGC 6 cut(s) 417, 451, 503, 537, 580, 614
BcoDI GTCTC 2 cut(s) 371, 684
BglII AGATCT 1 cut(s) 818
BisI GCNGC 7 cut(s) 141, 391, 439, 522, 604, 637, 802
BlsI GCNGC 7 cut(s) 142, 392, 440, 523, 605, 638, 803
BmeT110I CYCGRG 1 cut(s) 608
BmiI GGNNCC 1 cut(s) 670
BmsI GCATC 3 cut(s) 228, 393, 800
BpiI GAAGAC 1 cut(s) 571
Bpu10I CCTNAGC 1 cut(s) 632
BsaAI YACGTR 1 cut(s) 594
BsaHI GRCGYC 3 cut(s) 267, 360, 480
BsaI GGTCTC 2 cut(s) 371, 684
BsaJI CCNNGG 1 cut(s) 277
Bsc4I CCNNNNNNNGG 1 cut(s) 758
BseDI CCNNGG 1 cut(s) 277
BseGI GGATG 1 cut(s) 384
BseLI CCNNNNNNNGG 1 cut(s) 758
BseMII CTCAG 2 cut(s) 366, 646
BseRI GAGGAG 1 cut(s) 455
BseSI GKGCMC 1 cut(s) 673
BseXI GCAGC 3 cut(s) 425, 508, 813
BshFI GGCC 5 cut(s) 246, 282, 606, 639, 714
BshNI GGYRCC 1 cut(s) 668
BsiHKAI GWGCWC 1 cut(s) 408
BsiHKCI CYCGRG 1 cut(s) 608
BslFI GGGAC 2 cut(s) 598, 632
BslI CCNNNNNNNGG 1 cut(s) 758
BsmAI GTCTC 2 cut(s) 371, 684
BsmFI GGGAC 2 cut(s) 598, 632
BsnI GGCC 5 cut(s) 246, 282, 606, 639, 714
Bso31I GGTCTC 2 cut(s) 371, 684
BsoBI CYCGRG 1 cut(s) 608
Bsp1286I GDGCHC 2 cut(s) 408, 673
Bsp143I GATC 2 cut(s) 516, 818
BspANI GGCC 5 cut(s) 246, 282, 606, 639, 714
BspCNI CTCAG 2 cut(s) 367, 645
BspHI TCATGA 1 cut(s) 453
BspLI GGNNCC 1 cut(s) 670
BspT107I GGYRCC 1 cut(s) 668
BspTNI GGTCTC 2 cut(s) 371, 684
BsrBI CCGCTC 1 cut(s) 212
BssECI CCNNGG 1 cut(s) 277
BssMI GATC 2 cut(s) 516, 818
BssNI GRCGYC 3 cut(s) 267, 360, 480
Bst4CI ACNGT 2 cut(s) 493, 833
Bst6I CTCTTC 1 cut(s) 48
BstACI GRCGYC 3 cut(s) 267, 360, 480
BstAPI GCANNNNNTGC 1 cut(s) 810
BstBAI YACGTR 1 cut(s) 594
BstC8I GCNNGC 3 cut(s) 26, 573, 799
BstDEI CTNAG 2 cut(s) 375, 632
BstF5I GGATG 1 cut(s) 384
BstKTI GATC 2 cut(s) 519, 821
BstMAI GTCTC 2 cut(s) 371, 684
BstMBI GATC 2 cut(s) 516, 818
BstMWI GCNNNNNNNGC 5 cut(s) 371, 390, 444, 603, 810
BstNSI RCATGY 4 cut(s) 28, 445, 725, 801
BstSLI GKGCMC 1 cut(s) 673
BstV1I GCAGC 3 cut(s) 425, 508, 813
BstV2I GAAGAC 1 cut(s) 571
BstX2I RGATCY 1 cut(s) 818
BstYI RGATCY 1 cut(s) 818
BsuRI GGCC 5 cut(s) 246, 282, 606, 639, 714
BtsCI GGATG 1 cut(s) 384
Cac8I GCNNGC 3 cut(s) 26, 573, 799
CciI TCATGA 1 cut(s) 453
CseI GACGC 2 cut(s) 469, 586
CviAII CATG 7 cut(s) 25, 442, 449, 454, 716, 722, 798
CviJI RGCY 9 cut(s) 246, 282, 426, 463, 557, 606, 639, 714, 774
CviKI_1 RGCY 9 cut(s) 246, 282, 426, 463, 557, 606, 639, 714, 774
DdeI CTNAG 2 cut(s) 375, 632
DpnI GATC 2 cut(s) 518, 820
DpnII GATC 2 cut(s) 516, 818
EaeI YGGCCR 2 cut(s) 637, 712
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
EciI GGCGGA 1 cut(s) 377
Eco147I AGGCCT 1 cut(s) 246
Eco31I GGTCTC 2 cut(s) 371, 684
Eco57I CTGAAG 1 cut(s) 406
Eco72I CACGTG 1 cut(s) 594
Eco88I CYCGRG 1 cut(s) 608
FaeI CATG 7 cut(s) 28, 445, 452, 457, 719, 725, 801
FaqI GGGAC 2 cut(s) 598, 632
FatI CATG 7 cut(s) 24, 441, 448, 453, 715, 721, 797
FauI CCCGC 5 cut(s) 298, 309, 389, 576, 580
Fnu4HI GCNGC 7 cut(s) 141, 391, 439, 522, 604, 637, 802
FokI GGATG 1 cut(s) 371
Fsp4HI GCNGC 7 cut(s) 141, 391, 439, 522, 604, 637, 802
GluI GCNGC 7 cut(s) 141, 391, 439, 522, 604, 637, 802
HaeIII GGCC 5 cut(s) 246, 282, 606, 639, 714
HgaI GACGC 2 cut(s) 469, 586
Hin1I GRCGYC 3 cut(s) 267, 360, 480
Hin1II CATG 7 cut(s) 28, 445, 452, 457, 719, 725, 801
HincII GTYRAC 2 cut(s) 160, 274
HindII GTYRAC 2 cut(s) 160, 274
HinfI GANTC 4 cut(s) 4, 227, 368, 611
HphI GGTGA 2 cut(s) 167, 196
Hpy166II GTNNAC 3 cut(s) 160, 274, 484
Hpy188I TCNGA 2 cut(s) 403, 587
Hpy188III TCNNGA 4 cut(s) 224, 454, 783, 822
Hpy8I GTNNAC 3 cut(s) 160, 274, 484
Hpy99I CGWCG 8 cut(s) 238, 269, 272, 362, 365, 539, 602, 623
HpyAV CCTTC 1 cut(s) 126
HpyCH4III ACNGT 2 cut(s) 493, 833
HpyCH4IV ACGT 3 cut(s) 267, 360, 593
HpyCH4V TGCA 4 cut(s) 241, 441, 801, 813
HpyF10VI GCNNNNNNNGC 5 cut(s) 371, 390, 444, 603, 810
HpyF3I CTNAG 2 cut(s) 375, 632
HpySE526I ACGT 3 cut(s) 267, 360, 593
Hsp92I GRCGYC 3 cut(s) 267, 360, 480
Hsp92II CATG 7 cut(s) 28, 445, 452, 457, 719, 725, 801
Kzo9I GATC 2 cut(s) 516, 818
LmnI GCTCC 2 cut(s) 263, 468
LpnPI CCDG 4 cut(s) 209, 448, 539, 661
Lsp1109I GCAGC 3 cut(s) 425, 508, 813
LweI GCATC 3 cut(s) 228, 393, 800
MaeII ACGT 3 cut(s) 267, 360, 593
MaeIII GTNAC 1 cut(s) 827
MalI GATC 2 cut(s) 518, 820
MbiI CCGCTC 1 cut(s) 212
MboI GATC 2 cut(s) 516, 818
MboII GAAGA 6 cut(s) 35, 330, 333, 412, 469, 571
MflI RGATCY 1 cut(s) 818
MhlI GDGCHC 2 cut(s) 408, 673
MlsI TGGCCA 1 cut(s) 714
MluCI AATT 6 cut(s) 127, 200, 500, 705, 729, 755
MluNI TGGCCA 1 cut(s) 714
MlyI GAGTC 2 cut(s) 377, 620
MmeI TCCRAC 1 cut(s) 285
Mox20I TGGCCA 1 cut(s) 714
MscI TGGCCA 1 cut(s) 714
MslI CAYNNNNRTG 1 cut(s) 720
Msp20I TGGCCA 1 cut(s) 714
MspA1I CMGCKG 2 cut(s) 374, 636
MwoI GCNNNNNNNGC 5 cut(s) 371, 390, 444, 603, 810
NdeII GATC 2 cut(s) 516, 818
NlaIII CATG 7 cut(s) 28, 445, 452, 457, 719, 725, 801
NlaIV GGNNCC 1 cut(s) 670
NmeAIII GCCGAG 2 cut(s) 258, 391
NmuCI GTSAC 1 cut(s) 827
NspI RCATGY 4 cut(s) 28, 445, 725, 801
PaeI GCATGC 2 cut(s) 28, 801
PaeR7I CTCGAG 1 cut(s) 608
PagI TCATGA 1 cut(s) 453
PceI AGGCCT 1 cut(s) 246
PciI ACATGT 1 cut(s) 721
PcsI WCGNNNNNNNCGW 4 cut(s) 363, 504, 606, 615
PfeI GAWTC 2 cut(s) 4, 227
PflFI GACNNNGTC 1 cut(s) 269
PkrI GCNGC 7 cut(s) 142, 392, 440, 523, 605, 638, 803
PleI GAGTC 2 cut(s) 376, 619
PmaCI CACGTG 1 cut(s) 594
PmlI CACGTG 1 cut(s) 594
PpsI GAGTC 2 cut(s) 376, 619
Ppu21I YACGTR 1 cut(s) 594
PscI ACATGT 1 cut(s) 721
PsiI TTATAA 2 cut(s) 78, 853
PspCI CACGTG 1 cut(s) 594
PspN4I GGNNCC 1 cut(s) 670
PspXI VCTCGAGB 1 cut(s) 608
PsuI RGATCY 1 cut(s) 818
PsyI GACNNNGTC 1 cut(s) 269
RseI CAYNNNNRTG 1 cut(s) 720
SatI GCNGC 7 cut(s) 141, 391, 439, 522, 604, 637, 802
Sau3AI GATC 2 cut(s) 516, 818
SchI GAGTC 2 cut(s) 377, 620
SduI GDGCHC 2 cut(s) 408, 673
SfaNI GCATC 3 cut(s) 228, 393, 800
Sfr274I CTCGAG 1 cut(s) 608
SlaI CTCGAG 1 cut(s) 608
SmiMI CAYNNNNRTG 1 cut(s) 720
SmlI CTYRAG 1 cut(s) 608
SmoI CTYRAG 1 cut(s) 608
SphI GCATGC 2 cut(s) 28, 801
Sse9I AATT 6 cut(s) 127, 200, 500, 705, 729, 755
SseBI AGGCCT 1 cut(s) 246
SspI AATATT 1 cut(s) 745
StuI AGGCCT 1 cut(s) 246
TaaI ACNGT 2 cut(s) 493, 833
TaiI ACGT 3 cut(s) 270, 363, 596
TaqI TCGA 4 cut(s) 357, 498, 609, 823
TasI AATT 6 cut(s) 127, 200, 500, 705, 729, 755
TauI GCSGC 4 cut(s) 143, 393, 606, 639
TfiI GAWTC 2 cut(s) 4, 227
TseFI GTSAC 1 cut(s) 827
TseI GCWGC 3 cut(s) 438, 521, 801
Tsp45I GTSAC 1 cut(s) 827
TspDTI ATGAA 4 cut(s) 17, 470, 571, 732
Tth111I GACNNNGTC 1 cut(s) 269
XceI RCATGY 4 cut(s) 28, 445, 725, 801
XhoI CTCGAG 1 cut(s) 608
ZraI GACGTC 2 cut(s) 268, 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.