Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

3358414 .. 3358970

Gene Structure 557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGCTTTCGGGCGGGTCAGACGCCCTGAACAAACCCTGCCTACCTGAATTCCCCTGGACCAAGTTTCGCTTCTCCGGTTTTTTCGCCATGATGGCCTCGCTTGCCACGTTGCTCGTTGACTTTGTTGGGACCCAGTATTACGAGAGGAAACGGAGGAAGGCACGGCCCGCCGAGTACCAGGTGCGCGTCGGGTCGGATGACCCGGAGATTGTGGCGAGTGTGGGTCCGGGGCAGCCGGCGAAGGAGTGGAATGGGAAGGTGTTTGGGGAAGAGGAAGGGGCACGTGACGAGATAACCCGAACAGGGCCACGGAACGATTCGCACGGACACGGGCACGGGCATTATCACGGGTTCGGGGATGATGACGAGGATGGTGGTGTACGGCACGTCGTCGTTTTCCAGGTATTACTGCCTTTACATTTGTTGTTTGCGCGTAAATTATTGCTCTTTAATGTGGCGCTGAAAAGAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005381 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006829 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009624 GO:0010035 GO:0010038 GO:0010043 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0034220 GO:0034755 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0070838 GO:0071577 GO:0071944 GO:0072509 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

158

Amino Acids

17.57

Weight (kDa)

7.07

Isoelectric Point (pI)

32.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	186, 433
AciI	CCGC	2 cut(s)	12, 168
AcsI	RAATTY	1 cut(s)	47
AcvI	CACGTG	1 cut(s)	284
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	2 cut(s)	176, 381
AfiI	CCNNNNNNNGG	1 cut(s)	303
AjiI	CACGTC	1 cut(s)	388
AjnI	CCWGG	3 cut(s)	53, 177, 399
AjuI	GAANNNNNNNTTGG	2 cut(s)	53, 85
AoxI	GGCC	3 cut(s)	93, 164, 305
ApeKI	GCWGC	1 cut(s)	232
ApoI	RAATTY	1 cut(s)	47
AspLEI	GCGC	3 cut(s)	186, 433, 460
AspS9I	GGNCC	5 cut(s)	57, 129, 165, 224, 305
AsuC2I	CCSGG	2 cut(s)	203, 228
AvaII	GGWCC	3 cut(s)	57, 129, 224
BaeGI	GKGCMC	2 cut(s)	283, 336
BbrPI	CACGTG	1 cut(s)	284
BbvI	GCAGC	1 cut(s)	244
BccI	CCATC	2 cut(s)	85, 365
BceAI	ACGGC	2 cut(s)	179, 398
BciT130I	CCWGG	3 cut(s)	55, 179, 401
BcnI	CCSGG	2 cut(s)	203, 228
BfoI	RGCGCY	1 cut(s)	461
BglI	GCCNNNNNGGC	1 cut(s)	92
BisI	GCNGC	1 cut(s)	233
BlsI	GCNGC	1 cut(s)	234
Bme1390I	CCNGG	5 cut(s)	55, 179, 203, 228, 401
Bme18I	GGWCC	3 cut(s)	57, 129, 224
BmgBI	CACGTC	1 cut(s)	388
BmgT120I	GGNCC	5 cut(s)	57, 129, 165, 224, 305
BmiI	GGNNCC	3 cut(s)	130, 131, 225
BmrFI	CCNGG	5 cut(s)	55, 179, 203, 228, 401
BmrI	ACTGGG	1 cut(s)	127
BmuI	ACTGGG	1 cut(s)	127
BpuMI	CCSGG	2 cut(s)	203, 228
BsaAI	YACGTR	1 cut(s)	284
BsaHI	GRCGYC	1 cut(s)	21
BsaJI	CCNNGG	3 cut(s)	53, 227, 308
BsaWI	WCCGGW	1 cut(s)	74
Bsc4I	CCNNNNNNNGG	1 cut(s)	303
Bse118I	RCCGGY	1 cut(s)	235
Bse1I	ACTGG	1 cut(s)	133
BseBI	CCWGG	3 cut(s)	55, 179, 401
BseDI	CCNNGG	3 cut(s)	53, 227, 308
BseGI	GGATG	3 cut(s)	202, 364, 376
BseLI	CCNNNNNNNGG	1 cut(s)	303
BseNI	ACTGG	1 cut(s)	133
BseSI	GKGCMC	2 cut(s)	283, 336
BseXI	GCAGC	1 cut(s)	244
Bsh1236I	CGCG	2 cut(s)	186, 433
BshFI	GGCC	3 cut(s)	95, 166, 307
BsiSI	CCGG	4 cut(s)	75, 203, 227, 236
BslFI	GGGAC	1 cut(s)	142
BslI	CCNNNNNNNGG	1 cut(s)	303
BsmFI	GGGAC	1 cut(s)	142
BsnI	GGCC	3 cut(s)	95, 166, 307
Bsp1286I	GDGCHC	2 cut(s)	283, 336
BspACI	CCGC	2 cut(s)	12, 168
BspANI	GGCC	3 cut(s)	95, 166, 307
BspFNI	CGCG	2 cut(s)	186, 433
BspLI	GGNNCC	3 cut(s)	130, 131, 225
BsrFI	RCCGGY	1 cut(s)	235
BsrI	ACTGG	1 cut(s)	133
BssAI	RCCGGY	1 cut(s)	235
BssECI	CCNNGG	3 cut(s)	53, 227, 308
BssNI	GRCGYC	1 cut(s)	21
Bst2UI	CCWGG	3 cut(s)	55, 179, 401
Bst6I	CTCTTC	1 cut(s)	264
BstACI	GRCGYC	1 cut(s)	21
BstBAI	YACGTR	1 cut(s)	284
BstC8I	GCNNGC	3 cut(s)	102, 168, 237
BstDSI	CCRYGG	1 cut(s)	308
BstF5I	GGATG	3 cut(s)	202, 364, 376
BstFNI	CGCG	2 cut(s)	186, 433
BstH2I	RGCGCY	1 cut(s)	461
BstHHI	GCGC	3 cut(s)	186, 433, 460
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 101, 167
BstNI	CCWGG	3 cut(s)	55, 179, 401
BstSCI	CCNGG	5 cut(s)	53, 177, 201, 226, 399
BstSLI	GKGCMC	2 cut(s)	283, 336
BstUI	CGCG	2 cut(s)	186, 433
BstV1I	GCAGC	1 cut(s)	244
BsuRI	GGCC	3 cut(s)	95, 166, 307
BtgI	CCRYGG	1 cut(s)	308
BtrI	CACGTC	1 cut(s)	388
BtsCI	GGATG	3 cut(s)	202, 364, 376
Cac8I	GCNNGC	3 cut(s)	102, 168, 237
CfoI	GCGC	3 cut(s)	186, 433, 460
Cfr10I	RCCGGY	1 cut(s)	235
Cfr13I	GGNCC	5 cut(s)	57, 129, 165, 224, 305
CseI	GACGC	2 cut(s)	29, 175
CsiI	ACCWGGT	1 cut(s)	177
Csp6I	GTAC	2 cut(s)	175, 380
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	4 cut(s)	95, 166, 235, 307
CviKI_1	RGCY	4 cut(s)	95, 166, 235, 307
CviQI	GTAC	2 cut(s)	175, 380
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
Eco47I	GGWCC	3 cut(s)	57, 129, 224
Eco72I	CACGTG	1 cut(s)	284
EcoO109I	RGGNCCY	1 cut(s)	129
EcoRI	GAATTC	1 cut(s)	47
EcoRII	CCWGG	3 cut(s)	53, 177, 399
FaeI	CATG	1 cut(s)	91
FaiI	YATR	1 cut(s)	89
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FaqI	GGGAC	1 cut(s)	142
FatI	CATG	1 cut(s)	87
FauI	CCCGC	2 cut(s)	5, 175
Fnu4HI	GCNGC	1 cut(s)	233
FokI	GGATG	3 cut(s)	209, 371, 383
Fsp4HI	GCNGC	1 cut(s)	233
GlaI	GCGC	3 cut(s)	185, 432, 459
GluI	GCNGC	1 cut(s)	233
HaeII	RGCGCY	1 cut(s)	461
HaeIII	GGCC	3 cut(s)	95, 166, 307
HapII	CCGG	4 cut(s)	75, 203, 227, 236
HgaI	GACGC	2 cut(s)	29, 175
HhaI	GCGC	3 cut(s)	186, 433, 460
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	1 cut(s)	91
Hin6I	GCGC	3 cut(s)	184, 431, 458
HinP1I	GCGC	3 cut(s)	184, 431, 458
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	1 cut(s)	317
HpaII	CCGG	4 cut(s)	75, 203, 227, 236
Hpy166II	GTNNAC	2 cut(s)	118, 380
Hpy188I	TCNGA	2 cut(s)	19, 196
Hpy8I	GTNNAC	2 cut(s)	118, 380
Hpy99I	CGWCG	3 cut(s)	191, 392, 395
HpyAV	CCTTC	4 cut(s)	151, 235, 250, 269
HpyCH4IV	ACGT	3 cut(s)	107, 283, 387
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 101, 167
HpySE526I	ACGT	3 cut(s)	107, 283, 387
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	1 cut(s)	91
HspAI	GCGC	3 cut(s)	184, 431, 458
KflI	GGGWCCC	1 cut(s)	129
KroI	GCCGGC	1 cut(s)	235
KroNI	GCCGGC	1 cut(s)	237
Lsp1109I	GCAGC	1 cut(s)	244
MabI	ACCWGGT	1 cut(s)	177
MaeII	ACGT	3 cut(s)	107, 283, 387
MaeIII	GTNAC	1 cut(s)	284
MboII	GAAGA	1 cut(s)	281
MhlI	GDGCHC	2 cut(s)	283, 336
MluCI	AATT	2 cut(s)	47, 437
MmeI	TCCRAC	1 cut(s)	174
MnlI	CCTC	5 cut(s)	106, 138, 147, 265, 361
MroNI	GCCGGC	1 cut(s)	235
MseI	TTAA	1 cut(s)	450
MspI	CCGG	4 cut(s)	75, 203, 227, 236
MspR9I	CCNGG	5 cut(s)	55, 179, 203, 228, 401
MvaI	CCWGG	3 cut(s)	55, 179, 401
MvnI	CGCG	2 cut(s)	186, 433
MwoI	GCNNNNNNNGC	3 cut(s)	92, 101, 167
NaeI	GCCGGC	1 cut(s)	237
NciI	CCSGG	2 cut(s)	203, 228
NgoMIV	GCCGGC	1 cut(s)	235
NlaIII	CATG	1 cut(s)	91
NlaIV	GGNNCC	3 cut(s)	130, 131, 225
NmeAIII	GCCGAG	1 cut(s)	196
NmuCI	GTSAC	1 cut(s)	284
PcsI	WCGNNNNNNNCGW	1 cut(s)	104
PdiI	GCCGGC	1 cut(s)	237
PfeI	GAWTC	1 cut(s)	317
PkrI	GCNGC	1 cut(s)	234
PmaCI	CACGTG	1 cut(s)	284
PmlI	CACGTG	1 cut(s)	284
Ppu21I	YACGTR	1 cut(s)	284
PpuMI	RGGWCCY	1 cut(s)	129
Psp5II	RGGWCCY	1 cut(s)	129
Psp6I	CCWGG	3 cut(s)	53, 177, 399
PspCI	CACGTG	1 cut(s)	284
PspGI	CCWGG	3 cut(s)	53, 177, 399
PspN4I	GGNNCC	3 cut(s)	130, 131, 225
PspPI	GGNCC	5 cut(s)	57, 129, 165, 224, 305
PspPPI	RGGWCCY	1 cut(s)	129
RsaI	GTAC	2 cut(s)	176, 381
RsaNI	GTAC	2 cut(s)	175, 380
SaqAI	TTAA	1 cut(s)	450
SatI	GCNGC	1 cut(s)	233
Sau96I	GGNCC	5 cut(s)	57, 129, 165, 224, 305
ScrFI	CCNGG	5 cut(s)	55, 179, 203, 228, 401
SduI	GDGCHC	2 cut(s)	283, 336
SetI	ASST	7 cut(s)	46, 110, 183, 261, 286, 390, 405
SexAI	ACCWGGT	1 cut(s)	177
SinI	GGWCC	3 cut(s)	57, 129, 224
Sse9I	AATT	2 cut(s)	47, 437
SsiI	CCGC	2 cut(s)	12, 168
StyD4I	CCNGG	5 cut(s)	53, 177, 201, 226, 399
TaiI	ACGT	3 cut(s)	110, 286, 390
TasI	AATT	2 cut(s)	47, 437
TfiI	GAWTC	1 cut(s)	317
Tru1I	TTAA	1 cut(s)	450
Tru9I	TTAA	1 cut(s)	450
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	1 cut(s)	232
Tsp45I	GTSAC	1 cut(s)	284
TspGWI	ACGGA	3 cut(s)	166, 325, 339
VpaK11BI	GGWCC	3 cut(s)	57, 129, 224
XapI	RAATTY	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.