Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

3550804 .. 3552253

Gene Structure 1450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGCCTCTTTACCTCCTCCCTTTAAGACTCCCCTTCCTCTCTCGCCTGACCCAGGTGAAAACCCCCTATATCATGAAACCCGGTTGCCAATGGCTCCTATTGATATAGTTACTCATGCATCTCAGCTGCCTGCTGAGTTCTTGGAGCCATCAGCTGAAAGGCCATTGATCATTGGTTTCGATTGCGAGGGAGTTGACCTCTGTCGCCATGGAACTCTCTGTATTATGCAGCTTGCATTCCCAAATGCTATATATCTGGTTGATGCTATTCAGGGAGGGGTGATGCTTATCAATGCCTGTAAGCCTGCACTTGAGTCTCCCTACATCACCAAAGTCATTCATGACTGCAAACGAGATAGTGAGGCCTTGTACTTTCAGTTTGGCATCAAGCTGAACAATGTTGTAGATACCCAGGGGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019222 GO:0031047 GO:0032991 GO:0034587 GO:0034641 GO:0034660 GO:0035770 GO:0036464 GO:0042802 GO:0042803 GO:0043170 GO:0043186 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045495 GO:0046483 GO:0046983 GO:0048519 GO:0050789 GO:0060255 GO:0060293 GO:0065007 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904 GO:1990923

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol_A_exo1 KH_1

Protein Analysis

141

Amino Acids

15.36

Weight (kDa)

4.79

Isoelectric Point (pI)

38.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol_A_exo1	PF01612	42 - 138	1e-14	3'-5' exonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	371
AfiI	CCNNNNNNNGG	1 cut(s)	53
AjnI	CCWGG	2 cut(s)	52, 411
AluBI	AGCT	4 cut(s)	127, 155, 232, 391
AluI	AGCT	4 cut(s)	127, 155, 232, 391
Alw26I	GTCTC	1 cut(s)	321
AoxI	GGCC	3 cut(s)	3, 161, 363
ApeKI	GCWGC	2 cut(s)	127, 229
AsuC2I	CCSGG	1 cut(s)	82
AsuHPI	GGTGA	3 cut(s)	68, 292, 319
BbvI	GCAGC	2 cut(s)	114, 241
BccI	CCATC	1 cut(s)	157
BciT130I	CCWGG	2 cut(s)	54, 413
BclI	TGATCA	1 cut(s)	168
BcnI	CCSGG	1 cut(s)	82
BcoDI	GTCTC	1 cut(s)	321
BisI	GCNGC	2 cut(s)	128, 230
BlsI	GCNGC	2 cut(s)	129, 231
Bme1390I	CCNGG	3 cut(s)	54, 82, 413
BmiI	GGNNCC	2 cut(s)	96, 147
BmrFI	CCNGG	3 cut(s)	54, 82, 413
BmsI	GCATC	4 cut(s)	128, 253, 273, 393
BoxI	GACNNNNGTC	1 cut(s)	201
BplI	GAGNNNNNCTC	2 cut(s)	183, 215
BpuEI	CTTGAG	1 cut(s)	332
BpuMI	CCSGG	1 cut(s)	82
BsaBI	GATNNNNATC	1 cut(s)	287
BsaJI	CCNNGG	4 cut(s)	52, 208, 411, 412
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse8I	GATNNNNATC	1 cut(s)	287
BseBI	CCWGG	2 cut(s)	54, 413
BseDI	CCNNGG	4 cut(s)	52, 208, 411, 412
BseJI	GATNNNNATC	1 cut(s)	287
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMII	CTCAG	2 cut(s)	126, 137
BseRI	GAGGAG	1 cut(s)	6
BseXI	GCAGC	2 cut(s)	114, 241
BsgI	GTGCAG	1 cut(s)	291
BshFI	GGCC	3 cut(s)	5, 163, 365
BsiSI	CCGG	1 cut(s)	82
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmAI	GTCTC	1 cut(s)	321
BsmI	GAATGC	1 cut(s)	236
BsnI	GGCC	3 cut(s)	5, 163, 365
Bsp143I	GATC	1 cut(s)	168
Bsp19I	CCATGG	1 cut(s)	208
BspANI	GGCC	3 cut(s)	5, 163, 365
BspCNI	CTCAG	2 cut(s)	127, 136
BspHI	TCATGA	2 cut(s)	73, 340
BspLI	GGNNCC	2 cut(s)	96, 147
BssECI	CCNNGG	4 cut(s)	52, 208, 411, 412
BssMI	GATC	1 cut(s)	168
BssT1I	CCWWGG	1 cut(s)	208
Bst2UI	CCWGG	2 cut(s)	54, 413
BstC8I	GCNNGC	3 cut(s)	132, 234, 306
BstDEI	CTNAG	2 cut(s)	123, 135
BstDSI	CCRYGG	1 cut(s)	208
BstENI	CCTNNNNNAGG	1 cut(s)	51
BstKTI	GATC	1 cut(s)	171
BstMAI	GTCTC	1 cut(s)	321
BstMBI	GATC	1 cut(s)	168
BstNI	CCWGG	2 cut(s)	54, 413
BstPAI	GACNNNNGTC	1 cut(s)	201
BstSCI	CCNGG	3 cut(s)	52, 80, 411
BstV1I	GCAGC	2 cut(s)	114, 241
BsuRI	GGCC	3 cut(s)	5, 163, 365
BtgI	CCRYGG	1 cut(s)	208
Cac8I	GCNNGC	3 cut(s)	132, 234, 306
CciI	TCATGA	2 cut(s)	73, 340
Csp6I	GTAC	1 cut(s)	370
CviAII	CATG	4 cut(s)	74, 116, 209, 341
CviQI	GTAC	1 cut(s)	370
DdeI	CTNAG	2 cut(s)	123, 135
DpnI	GATC	1 cut(s)	170
DpnII	GATC	1 cut(s)	168
Eco130I	CCWWGG	1 cut(s)	208
Eco147I	AGGCCT	1 cut(s)	365
EcoNI	CCTNNNNNAGG	1 cut(s)	51
EcoRII	CCWGG	2 cut(s)	52, 411
EcoT14I	CCWWGG	1 cut(s)	208
EcoT22I	ATGCAT	1 cut(s)	121
ErhI	CCWWGG	1 cut(s)	208
FaeI	CATG	4 cut(s)	77, 119, 212, 344
FaiI	YATR	9 cut(s)	70, 75, 107, 117, 210, 227, 251, 253, 342
FatI	CATG	4 cut(s)	73, 115, 208, 340
FbaI	TGATCA	1 cut(s)	168
Fnu4HI	GCNGC	2 cut(s)	128, 230
Fsp4HI	GCNGC	2 cut(s)	128, 230
GluI	GCNGC	2 cut(s)	128, 230
HaeIII	GGCC	3 cut(s)	5, 163, 365
HapII	CCGG	1 cut(s)	82
Hin1II	CATG	4 cut(s)	77, 119, 212, 344
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HinfI	GANTC	2 cut(s)	28, 314
HpaII	CCGG	1 cut(s)	82
HphI	GGTGA	3 cut(s)	68, 292, 319
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188III	TCNNGA	2 cut(s)	74, 341
Hpy8I	GTNNAC	1 cut(s)	196
HpyAV	CCTTC	1 cut(s)	44
HpyCH4V	TGCA	5 cut(s)	119, 229, 236, 308, 348
HpyF3I	CTNAG	2 cut(s)	123, 135
Hsp92II	CATG	4 cut(s)	77, 119, 212, 344
Ksp22I	TGATCA	1 cut(s)	168
Kzo9I	GATC	1 cut(s)	168
LmnI	GCTCC	2 cut(s)	100, 145
Lsp1109I	GCAGC	2 cut(s)	114, 241
LweI	GCATC	4 cut(s)	128, 253, 273, 393
MaeIII	GTNAC	1 cut(s)	109
MalI	GATC	1 cut(s)	170
MboI	GATC	1 cut(s)	168
MlyI	GAGTC	2 cut(s)	22, 323
MnlI	CCTC	8 cut(s)	16, 24, 27, 48, 181, 209, 269, 355
Mph1103I	ATGCAT	1 cut(s)	121
MseI	TTAA	1 cut(s)	24
MspA1I	CMGCKG	2 cut(s)	127, 155
MspI	CCGG	1 cut(s)	82
MspR9I	CCNGG	3 cut(s)	54, 82, 413
Mva1269I	GAATGC	1 cut(s)	236
MvaI	CCWGG	2 cut(s)	54, 413
NciI	CCSGG	1 cut(s)	82
NcoI	CCATGG	1 cut(s)	208
NdeII	GATC	1 cut(s)	168
NlaIII	CATG	4 cut(s)	77, 119, 212, 344
NlaIV	GGNNCC	2 cut(s)	96, 147
NsiI	ATGCAT	1 cut(s)	121
PagI	TCATGA	2 cut(s)	73, 340
PasI	CCCWGGG	1 cut(s)	412
PceI	AGGCCT	1 cut(s)	365
PctI	GAATGC	1 cut(s)	236
PkrI	GCNGC	2 cut(s)	129, 231
PleI	GAGTC	2 cut(s)	22, 322
PpsI	GAGTC	2 cut(s)	22, 322
PshAI	GACNNNNGTC	1 cut(s)	201
Psp6I	CCWGG	2 cut(s)	52, 411
PspGI	CCWGG	2 cut(s)	52, 411
PspN4I	GGNNCC	2 cut(s)	96, 147
PvuII	CAGCTG	2 cut(s)	127, 155
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
SaqAI	TTAA	1 cut(s)	24
SatI	GCNGC	2 cut(s)	128, 230
Sau3AI	GATC	1 cut(s)	168
SchI	GAGTC	2 cut(s)	22, 323
ScrFI	CCNGG	3 cut(s)	54, 82, 413
SetI	ASST	7 cut(s)	16, 58, 129, 157, 201, 234, 393
SfaNI	GCATC	4 cut(s)	128, 253, 273, 393
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
SseBI	AGGCCT	1 cut(s)	365
StuI	AGGCCT	1 cut(s)	365
StyD4I	CCNGG	3 cut(s)	52, 80, 411
StyI	CCWWGG	1 cut(s)	208
TaqI	TCGA	1 cut(s)	180
TatI	WGTACW	1 cut(s)	369
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TseI	GCWGC	2 cut(s)	127, 229
TspDTI	ATGAA	2 cut(s)	90, 329
XagI	CCTNNNNNAGG	1 cut(s)	51
Zsp2I	ATGCAT	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.