pycom15g06000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Forward (+)
3646741 .. 3647882
1142 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 633 bp
ATGCATAATAGTAGATACCTGCCACAATGTCTGGTGGAGAAAATACTTCTAATCCGCAGAGAGGAAGTATTCATTGCTGATGACTTGCGACTCAAGAAAGTTTTCTCAGGCTGTGAAAAATTTCCTCTGTTTGTTTGCTTTCCCAAGAGTCACAGCTTGTCTTATATTTACCCAGGAAGACTACAAGCAATCTACGAATCTCTTGGATGGGAAAAGATTGATGCGAGGAATGGATTGATCGGGAGGGGTTTAGTCATGACTATTCTGGCTTTTCTTGCTGGTCCTGAGGTAAATATGTCACTAAGAGACAGACACAAGGCCGCAAATTCGGTAGTTATGCTGTCAGTGTTCCGAAGGACAAGAATTGATCTAGAGTTTCTTACTTCTTTTGCTATCGAACTCACGCAAGAACTTTTGGCACCAGCAAAACCTACTAGAGCAGATAAATTGAGCAAGCTTATCCTAATGGGATTTATGTTTGATATTAGTGAGGGTGAAGTGGATTGTTTTCTTAAAGCTGCATTCGTCACTTCTGGAGAACTTGGTCGGGTTTATGAAAAGAATTCTGGTACCAAGTTAGAGCAATTAGGCCCTTCCACGCCAATGCCTTTATGCAAGAAACAGCGTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

211

Amino Acids

23.82

Weight (kDa)

9.22

Isoelectric Point (pI)

41.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 27
Acc65I GGTACC 1 cut(s) 569
AccB1I GGYRCC 2 cut(s) 418, 569
AciI CCGC 2 cut(s) 55, 321
AcsI RAATTY 3 cut(s) 119, 325, 562
AfaI GTAC 1 cut(s) 571
AfiI CCNNNNNNNGG 1 cut(s) 61
AjnI CCWGG 1 cut(s) 172
AluBI AGCT 3 cut(s) 156, 457, 518
AluI AGCT 3 cut(s) 156, 457, 518
Alw26I GTCTC 1 cut(s) 300
AoxI GGCC 2 cut(s) 318, 589
ApeKI GCWGC 1 cut(s) 518
ApoI RAATTY 3 cut(s) 119, 325, 562
Asp700I GAANNNNTTC 2 cut(s) 101, 120
Asp718I GGTACC 1 cut(s) 569
AspS9I GGNCC 2 cut(s) 281, 590
AsuHPI GGTGA 1 cut(s) 506
AvaII GGWCC 1 cut(s) 281
AxyI CCTNAGG 1 cut(s) 285
BanI GGYRCC 2 cut(s) 418, 569
BbsI GAAGAC 1 cut(s) 184
BbvI GCAGC 1 cut(s) 505
BccI CCATC 1 cut(s) 201
BciT130I CCWGG 1 cut(s) 174
BcoDI GTCTC 1 cut(s) 300
BfaI CTAG 2 cut(s) 371, 435
BfuAI ACCTGC 1 cut(s) 27
BisI GCNGC 2 cut(s) 321, 519
BlsI GCNGC 2 cut(s) 322, 520
Bme1390I CCNGG 1 cut(s) 174
Bme18I GGWCC 1 cut(s) 281
BmgT120I GGNCC 2 cut(s) 281, 590
BmiI GGNNCC 2 cut(s) 420, 571
BmrFI CCNGG 1 cut(s) 174
BmsI GCATC 1 cut(s) 211
BpiI GAAGAC 1 cut(s) 184
BpmI CTGGAG 1 cut(s) 555
BpuEI CTTGAG 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 172
Bsc4I CCNNNNNNNGG 1 cut(s) 61
Bse21I CCTNAGG 1 cut(s) 285
Bse3DI GCAATG 1 cut(s) 72
BseBI CCWGG 1 cut(s) 174
BseDI CCNNGG 1 cut(s) 172
BseGI GGATG 1 cut(s) 212
BseLI CCNNNNNNNGG 1 cut(s) 61
BseMI GCAATG 1 cut(s) 72
BseMII CTCAG 2 cut(s) 120, 276
BseXI GCAGC 1 cut(s) 505
BshFI GGCC 2 cut(s) 320, 591
BshNI GGYRCC 2 cut(s) 418, 569
BslI CCNNNNNNNGG 1 cut(s) 61
BsmAI GTCTC 1 cut(s) 300
BsmI GAATGC 1 cut(s) 521
BsnI GGCC 2 cut(s) 320, 591
Bsp143I GATC 2 cut(s) 237, 367
BspACI CCGC 2 cut(s) 55, 321
BspANI GGCC 2 cut(s) 320, 591
BspCNI CTCAG 2 cut(s) 119, 277
BspHI TCATGA 1 cut(s) 255
BspLI GGNNCC 2 cut(s) 420, 571
BspMI ACCTGC 1 cut(s) 27
BspT107I GGYRCC 2 cut(s) 418, 569
BsrDI GCAATG 1 cut(s) 72
BssECI CCNNGG 1 cut(s) 172
BssMI GATC 2 cut(s) 237, 367
Bst2UI CCWGG 1 cut(s) 174
BstC8I GCNNGC 1 cut(s) 455
BstDEI CTNAG 3 cut(s) 106, 285, 302
BstF5I GGATG 1 cut(s) 212
BstKTI GATC 2 cut(s) 240, 370
BstMAI GTCTC 1 cut(s) 300
BstMBI GATC 2 cut(s) 237, 367
BstMWI GCNNNNNNNGC 1 cut(s) 275
BstNI CCWGG 1 cut(s) 174
BstSCI CCNGG 1 cut(s) 172
BstV1I GCAGC 1 cut(s) 505
BstV2I GAAGAC 1 cut(s) 184
Bsu36I CCTNAGG 1 cut(s) 285
BsuRI GGCC 2 cut(s) 320, 591
BtsCI GGATG 1 cut(s) 212
BtsIMutI CAGTG 1 cut(s) 351
BveI ACCTGC 1 cut(s) 27
Cac8I GCNNGC 1 cut(s) 455
CciI TCATGA 1 cut(s) 255
Cfr13I GGNCC 2 cut(s) 281, 590
CseI GACGC 1 cut(s) 614
Csp6I GTAC 1 cut(s) 570
CviAII CATG 1 cut(s) 256
CviJI RGCY 7 cut(s) 111, 156, 269, 320, 457, 518, 591
CviKI_1 RGCY 7 cut(s) 111, 156, 269, 320, 457, 518, 591
CviQI GTAC 1 cut(s) 570
DdeI CTNAG 3 cut(s) 106, 285, 302
DpnI GATC 2 cut(s) 239, 369
DpnII GATC 2 cut(s) 237, 367
Eco47I GGWCC 1 cut(s) 281
Eco81I CCTNAGG 1 cut(s) 285
EcoO109I RGGNCCY 1 cut(s) 590
EcoRI GAATTC 1 cut(s) 562
EcoRII CCWGG 1 cut(s) 172
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 259
FaiI YATR 8 cut(s) 6, 165, 257, 296, 338, 476, 555, 613
FatI CATG 1 cut(s) 255
Fnu4HI GCNGC 2 cut(s) 321, 519
FokI GGATG 1 cut(s) 219
Fsp4HI GCNGC 2 cut(s) 321, 519
FspBI CTAG 2 cut(s) 371, 435
GluI GCNGC 2 cut(s) 321, 519
GsuI CTGGAG 1 cut(s) 555
HaeIII GGCC 2 cut(s) 320, 591
HgaI GACGC 1 cut(s) 614
Hin1II CATG 1 cut(s) 259
HindIII AAGCTT 1 cut(s) 455
HinfI GANTC 3 cut(s) 90, 148, 197
HphI GGTGA 1 cut(s) 506
Hpy188I TCNGA 1 cut(s) 353
Hpy188III TCNNGA 6 cut(s) 94, 241, 256, 284, 371, 534
HpyAV CCTTC 2 cut(s) 348, 603
HpyCH4V TGCA 3 cut(s) 4, 521, 615
HpyF10VI GCNNNNNNNGC 1 cut(s) 275
HpyF3I CTNAG 3 cut(s) 106, 285, 302
Hsp92II CATG 1 cut(s) 259
KpnI GGTACC 1 cut(s) 573
Kzo9I GATC 2 cut(s) 237, 367
Lsp1109I GCAGC 1 cut(s) 505
LweI GCATC 1 cut(s) 211
MaeI CTAG 2 cut(s) 371, 435
MaeIII GTNAC 3 cut(s) 149, 297, 526
MalI GATC 2 cut(s) 239, 369
MboI GATC 2 cut(s) 237, 367
MboII GAAGA 1 cut(s) 189
MluCI AATT 6 cut(s) 119, 325, 363, 446, 562, 584
MlyI GAGTC 2 cut(s) 84, 157
MnlI CCTC 6 cut(s) 55, 135, 219, 237, 280, 484
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 2 cut(s) 101, 120
MseI TTAA 1 cut(s) 513
MslI CAYNNNNRTG 1 cut(s) 602
MspR9I CCNGG 1 cut(s) 174
Mva1269I GAATGC 1 cut(s) 521
MvaI CCWGG 1 cut(s) 174
MwoI GCNNNNNNNGC 1 cut(s) 275
NdeII GATC 2 cut(s) 237, 367
NlaIII CATG 1 cut(s) 259
NlaIV GGNNCC 2 cut(s) 420, 571
NmuCI GTSAC 3 cut(s) 149, 297, 526
NsiI ATGCAT 1 cut(s) 6
PagI TCATGA 1 cut(s) 255
PctI GAATGC 1 cut(s) 521
PdmI GAANNNNTTC 2 cut(s) 101, 120
PfeI GAWTC 1 cut(s) 197
PkrI GCNGC 2 cut(s) 322, 520
PleI GAGTC 2 cut(s) 84, 156
PpsI GAGTC 2 cut(s) 84, 156
Psp6I CCWGG 1 cut(s) 172
PspGI CCWGG 1 cut(s) 172
PspN4I GGNNCC 2 cut(s) 420, 571
PspPI GGNCC 2 cut(s) 281, 590
RsaI GTAC 1 cut(s) 571
RsaNI GTAC 1 cut(s) 570
RseI CAYNNNNRTG 1 cut(s) 602
SaqAI TTAA 1 cut(s) 513
SatI GCNGC 2 cut(s) 321, 519
Sau3AI GATC 2 cut(s) 237, 367
Sau96I GGNCC 2 cut(s) 281, 590
SchI GAGTC 2 cut(s) 84, 157
ScrFI CCNGG 1 cut(s) 174
SetI ASST 6 cut(s) 21, 158, 291, 433, 459, 520
SfaNI GCATC 1 cut(s) 211
SinI GGWCC 1 cut(s) 281
SmiMI CAYNNNNRTG 1 cut(s) 602
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
Sse9I AATT 6 cut(s) 119, 325, 363, 446, 562, 584
SsiI CCGC 2 cut(s) 55, 321
SspMI CTAG 2 cut(s) 371, 435
StyD4I CCNGG 1 cut(s) 172
TaqI TCGA 1 cut(s) 396
TasI AATT 6 cut(s) 119, 325, 363, 446, 562, 584
TauI GCSGC 1 cut(s) 323
TfiI GAWTC 1 cut(s) 197
Tru1I TTAA 1 cut(s) 513
Tru9I TTAA 1 cut(s) 513
TscAI CASTG 1 cut(s) 351
TseFI GTSAC 3 cut(s) 149, 297, 526
TseI GCWGC 1 cut(s) 518
Tsp45I GTSAC 3 cut(s) 149, 297, 526
TspDTI ATGAA 2 cut(s) 61, 570
TspRI CASTG 1 cut(s) 351
VpaK11BI GGWCC 1 cut(s) 281
XapI RAATTY 3 cut(s) 119, 325, 562
XbaI TCTAGA 1 cut(s) 370
XmnI GAANNNNTTC 2 cut(s) 101, 120
XspI CTAG 2 cut(s) 371, 435
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.