Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

3844949 .. 3848350

Gene Structure 3402 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGCTTTCAAACAACCAAAATTGGATTTTGATTACGACGGCGGCGGTGGAGGCTGATACATTACTTGAGGCGGCGGAGGAGGCTGAGGATACCCCTGCGCCGGATAGCCTGGTGCTCGCATCCAATAAAGGTTTGCATTTTGCAAAGTCTCAAGGCCAAGCATATATTATGATGATGGCTTCCAGAACTCCCGGAACGCCAAGAGCTAAGAAGGAGAAGATTGTTGTGTTAGTGTGTTTAAGGCCTCTAAGCAAAAGGGAGGAGCTCGCAAAAGAACAAGTTTCGTGGGATTGCCTCGGCGACAACACCATTGTTTATAAACCCCCGCCTCACGAACGTTCCGCTCAATCCGCCTCGTTTACATTTGATAAAGTTTTCGGTCCTGGTTCAACCGAAGCAGTATATGAGGAAGGAGTGAGAAATGTTGCCTTGTCTTCTCTGATGGGAATTAACGGTAGTGATTATCCAACTATATTTGCTTATGGACAAAGTGGCAGTGGCAAGACATACACAATGAAAGGAATAATGGAAAAAGCTGTCGATGATATCTACAACCATATAACGAATACTCCAGAGAGGGAGTTTGGAATAAAAATTTCGGGACTTGAGATATACAATGAGAATGTCCGCGACTTGCTGAATACAGAATCTGTTGGCAATTTAAAGCTTCTAGATGATCCAGAGGTATTGCTTTGTAAAATTACCATAGTCTTTGGTGAACTAATTAATCCTCCTTTGACTTCTCATTCAAGTTCTAGTGTTTTCTTTAATGTAGAAAGGAATCGTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000775 GO:0000910 GO:0000911 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0007275 GO:0007349 GO:0008150 GO:0009524 GO:0009553 GO:0009555 GO:0009558 GO:0009561 GO:0009653 GO:0009987 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022607 GO:0032501 GO:0032502 GO:0032506 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043515 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0048229 GO:0048285 GO:0048646 GO:0048856 GO:0051225 GO:0051301 GO:0061640 GO:0070925 GO:0071840 GO:0090307 GO:0098687 GO:0140014 GO:1902410 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3490 Kinesin

Protein Analysis

264

Amino Acids

28.87

Weight (kDa)

5.06

Isoelectric Point (pI)

28.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	80 - 228	9.3e-31	Kinesin motor domain
Microtub_bd	PF16796	109 - 213	3.4e-18	Microtubule binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	318
AccBSI	CCGCTC	1 cut(s)	344
AccII	CGCG	1 cut(s)	630
AciI	CCGC	8 cut(s)	41, 44, 71, 74, 326, 342, 351, 628
AclI	AACGTT	1 cut(s)	337
AclWI	GGATC	1 cut(s)	671
AcsI	RAATTY	1 cut(s)	594
AfiI	CCNNNNNNNGG	1 cut(s)	100
AgsI	TTSAA	3 cut(s)	9, 390, 750
AjnI	CCWGG	2 cut(s)	108, 382
AluBI	AGCT	4 cut(s)	206, 265, 536, 667
AluI	AGCT	4 cut(s)	206, 265, 536, 667
Alw21I	GWGCWC	2 cut(s)	117, 267
Alw26I	GTCTC	1 cut(s)	153
AlwI	GGATC	1 cut(s)	671
AlwNI	CAGNNNCTG	1 cut(s)	650
AoxI	GGCC	2 cut(s)	154, 242
ApoI	RAATTY	1 cut(s)	594
AseI	ATTAAT	1 cut(s)	726
AspLEI	GCGC	1 cut(s)	100
AspS9I	GGNCC	1 cut(s)	380
AsuC2I	CCSGG	1 cut(s)	192
AsuHPI	GGTGA	1 cut(s)	728
AvaII	GGWCC	1 cut(s)	380
BanII	GRGCYC	1 cut(s)	267
BbsI	GAAGAC	1 cut(s)	426
Bbv12I	GWGCWC	2 cut(s)	117, 267
BbvCI	CCTCAGC	1 cut(s)	84
BccI	CCATC	2 cut(s)	169, 436
BceAI	ACGGC	1 cut(s)	54
BciT130I	CCWGG	2 cut(s)	110, 384
BciVI	GTATCC	1 cut(s)	82
BcnI	CCSGG	1 cut(s)	192
BcoDI	GTCTC	1 cut(s)	153
BfaI	CTAG	2 cut(s)	671, 756
BfuI	GTATCC	1 cut(s)	82
BisI	GCNGC	2 cut(s)	42, 72
BlsI	GCNGC	2 cut(s)	43, 73
Bme1390I	CCNGG	3 cut(s)	110, 192, 384
Bme18I	GGWCC	1 cut(s)	380
BmgT120I	GGNCC	1 cut(s)	380
BmrFI	CCNGG	3 cut(s)	110, 192, 384
BmsI	GCATC	1 cut(s)	128
BpiI	GAAGAC	1 cut(s)	426
BpmI	CTGGAG	1 cut(s)	555
Bpu10I	CCTNAGC	1 cut(s)	84
BpuEI	CTTGAG	3 cut(s)	86, 135, 626
BpuMI	CCSGG	1 cut(s)	192
BsaJI	CCNNGG	1 cut(s)	295
BsaXI	ACNNNNNCTCC	2 cut(s)	553, 583
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
BseBI	CCWGG	2 cut(s)	110, 384
BseDI	CCNNGG	1 cut(s)	295
BseGI	GGATG	1 cut(s)	119
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseMII	CTCAG	1 cut(s)	75
BseRI	GAGGAG	2 cut(s)	92, 275
Bsh1236I	CGCG	1 cut(s)	630
BshFI	GGCC	2 cut(s)	156, 244
BsiHKAI	GWGCWC	2 cut(s)	117, 267
BsiSI	CCGG	2 cut(s)	101, 192
BslFI	GGGAC	1 cut(s)	615
BslI	CCNNNNNNNGG	1 cut(s)	100
BsmAI	GTCTC	1 cut(s)	153
BsmFI	GGGAC	1 cut(s)	615
BsnI	GGCC	2 cut(s)	156, 244
Bsp1286I	GDGCHC	2 cut(s)	117, 267
Bsp143I	GATC	1 cut(s)	676
BspACI	CCGC	8 cut(s)	41, 44, 71, 74, 326, 342, 351, 628
BspANI	GGCC	2 cut(s)	156, 244
BspCNI	CTCAG	1 cut(s)	76
BspFNI	CGCG	1 cut(s)	630
BspPI	GGATC	1 cut(s)	671
BsrBI	CCGCTC	1 cut(s)	344
BssECI	CCNNGG	1 cut(s)	295
BssMI	GATC	1 cut(s)	676
Bst2UI	CCWGG	2 cut(s)	110, 384
Bst4CI	ACNGT	1 cut(s)	455
BstC8I	GCNNGC	2 cut(s)	117, 267
BstDEI	CTNAG	3 cut(s)	84, 207, 248
BstF5I	GGATG	1 cut(s)	119
BstFNI	CGCG	1 cut(s)	630
BstHHI	GCGC	1 cut(s)	100
BstKTI	GATC	1 cut(s)	679
BstMAI	GTCTC	1 cut(s)	153
BstMBI	GATC	1 cut(s)	676
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 80, 350
BstNI	CCWGG	2 cut(s)	110, 384
BstSCI	CCNGG	3 cut(s)	108, 190, 382
BstUI	CGCG	1 cut(s)	630
BstV2I	GAAGAC	1 cut(s)	426
BsuI	GTATCC	1 cut(s)	82
BsuRI	GGCC	2 cut(s)	156, 244
BtsCI	GGATG	1 cut(s)	119
BtsI	GCAGTG	1 cut(s)	502
BtsIMutI	CAGTG	1 cut(s)	502
Cac8I	GCNNGC	2 cut(s)	117, 267
CaiI	CAGNNNCTG	1 cut(s)	650
CfoI	GCGC	1 cut(s)	100
Cfr13I	GGNCC	1 cut(s)	380
CspCI	CAANNNNNGTGG	2 cut(s)	266, 301
DdeI	CTNAG	3 cut(s)	84, 207, 248
DpnI	GATC	1 cut(s)	678
DpnII	GATC	1 cut(s)	676
DraI	TTTAAA	1 cut(s)	663
EciI	GGCGGA	2 cut(s)	89, 340
Ecl136II	GAGCTC	1 cut(s)	265
Eco147I	AGGCCT	1 cut(s)	244
Eco24I	GRGCYC	1 cut(s)	267
Eco32I	GATATC	1 cut(s)	547
Eco47I	GGWCC	1 cut(s)	380
Eco53kI	GAGCTC	1 cut(s)	265
EcoICRI	GAGCTC	1 cut(s)	265
EcoRII	CCWGG	2 cut(s)	108, 382
EcoRV	GATATC	1 cut(s)	547
EcoT38I	GRGCYC	1 cut(s)	267
FaqI	GGGAC	1 cut(s)	615
FauI	CCCGC	1 cut(s)	333
Fnu4HI	GCNGC	2 cut(s)	42, 72
FokI	GGATG	1 cut(s)	106
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	2 cut(s)	42, 72
FspBI	CTAG	2 cut(s)	671, 756
GlaI	GCGC	1 cut(s)	99
GluI	GCNGC	2 cut(s)	42, 72
GsuI	CTGGAG	1 cut(s)	555
HaeIII	GGCC	2 cut(s)	156, 244
HapII	CCGG	2 cut(s)	101, 192
HhaI	GCGC	1 cut(s)	100
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HindIII	AAGCTT	1 cut(s)	665
HinfI	GANTC	2 cut(s)	647, 781
HpaII	CCGG	2 cut(s)	101, 192
HphI	GGTGA	1 cut(s)	728
Hpy166II	GTNNAC	2 cut(s)	360, 719
Hpy188I	TCNGA	1 cut(s)	441
Hpy188III	TCNNGA	6 cut(s)	183, 332, 572, 600, 671, 680
Hpy8I	GTNNAC	2 cut(s)	360, 719
Hpy99I	CGWCG	1 cut(s)	40
HpyAV	CCTTC	2 cut(s)	205, 404
HpyCH4III	ACNGT	1 cut(s)	455
HpyCH4IV	ACGT	1 cut(s)	337
HpyCH4V	TGCA	2 cut(s)	136, 143
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 80, 350
HpyF3I	CTNAG	3 cut(s)	84, 207, 248
HpySE526I	ACGT	1 cut(s)	337
HspAI	GCGC	1 cut(s)	98
Kzo9I	GATC	1 cut(s)	676
LmnI	GCTCC	1 cut(s)	262
LweI	GCATC	1 cut(s)	128
MaeI	CTAG	2 cut(s)	671, 756
MaeII	ACGT	1 cut(s)	337
MalI	GATC	1 cut(s)	678
MbiI	CCGCTC	1 cut(s)	344
MboI	GATC	1 cut(s)	676
MboII	GAAGA	2 cut(s)	229, 426
MhlI	GDGCHC	2 cut(s)	117, 267
MluCI	AATT	6 cut(s)	19, 447, 594, 658, 699, 723
MmeI	TCCRAC	1 cut(s)	491
MseI	TTAA	5 cut(s)	239, 450, 662, 726, 768
MspI	CCGG	2 cut(s)	101, 192
MspR9I	CCNGG	3 cut(s)	110, 192, 384
MvaI	CCWGG	2 cut(s)	110, 384
MvnI	CGCG	1 cut(s)	630
MwoI	GCNNNNNNNGC	3 cut(s)	50, 80, 350
NciI	CCSGG	1 cut(s)	192
NdeII	GATC	1 cut(s)	676
NmeAIII	GCCGAG	1 cut(s)	276
PceI	AGGCCT	1 cut(s)	244
PfeI	GAWTC	2 cut(s)	647, 781
PfoI	TCCNGGA	1 cut(s)	190
PkrI	GCNGC	2 cut(s)	43, 73
PshBI	ATTAAT	1 cut(s)	726
PsiI	TTATAA	1 cut(s)	318
Psp124BI	GAGCTC	1 cut(s)	267
Psp1406I	AACGTT	1 cut(s)	337
Psp6I	CCWGG	2 cut(s)	108, 382
PspGI	CCWGG	2 cut(s)	108, 382
PspPI	GGNCC	1 cut(s)	380
PstNI	CAGNNNCTG	1 cut(s)	650
SacI	GAGCTC	1 cut(s)	267
SaqAI	TTAA	5 cut(s)	239, 450, 662, 726, 768
SatI	GCNGC	2 cut(s)	42, 72
Sau3AI	GATC	1 cut(s)	676
Sau96I	GGNCC	1 cut(s)	380
ScrFI	CCNGG	3 cut(s)	110, 192, 384
SduI	GDGCHC	2 cut(s)	117, 267
SetI	ASST	7 cut(s)	133, 208, 267, 340, 538, 669, 687
SfaNI	GCATC	1 cut(s)	128
SinI	GGWCC	1 cut(s)	380
SmlI	CTYRAG	3 cut(s)	65, 150, 605
SmoI	CTYRAG	3 cut(s)	65, 150, 605
Sse9I	AATT	6 cut(s)	19, 447, 594, 658, 699, 723
SseBI	AGGCCT	1 cut(s)	244
SsiI	CCGC	8 cut(s)	41, 44, 71, 74, 326, 342, 351, 628
SspMI	CTAG	2 cut(s)	671, 756
SstI	GAGCTC	1 cut(s)	267
StuI	AGGCCT	1 cut(s)	244
StyD4I	CCNGG	3 cut(s)	108, 190, 382
TaaI	ACNGT	1 cut(s)	455
TaiI	ACGT	1 cut(s)	340
TaqI	TCGA	1 cut(s)	540
TaqII	GACCGA	1 cut(s)	368
TasI	AATT	6 cut(s)	19, 447, 594, 658, 699, 723
TauI	GCSGC	2 cut(s)	44, 74
TfiI	GAWTC	2 cut(s)	647, 781
Tru1I	TTAA	5 cut(s)	239, 450, 662, 726, 768
Tru9I	TTAA	5 cut(s)	239, 450, 662, 726, 768
TscAI	CASTG	1 cut(s)	502
TspDTI	ATGAA	1 cut(s)	530
TspRI	CASTG	1 cut(s)	502
VpaK11BI	GGWCC	1 cut(s)	380
VspI	ATTAAT	1 cut(s)	726
XapI	RAATTY	1 cut(s)	594
XbaI	TCTAGA	1 cut(s)	670
XspI	CTAG	2 cut(s)	671, 756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.