pycom15g06300
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Forward (+)
3852592 .. 3853041
450 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 357 bp
ATGCGACCAGAATCTCTGGAGATGCCCTCAAATACCATTGTTCTATCTGACACAGAGTCTCCTGTAGTGCATAAAAACCATGAAAAAGCGCCAAAGAGTTTTACCATCGTTCTGTCTGATTCCTCGGAATCTGATGCTTCAGATACTTCGTCTCCTTCCATGGAACCGGAAGTTTCAGATACTTGGTCTCCTCTACTGGGCGAGATACAGCCTAAACATAAAGCTCAAAAGACAAGAGAATCCGGAAATCAACCAACGAGGTCAAACTTGCCACTGCCTAGAAGGAGGCGGCGTATGAGATTATACTGGACAAGAGAAGAAGAAGAAAAGTTGAAGGTATTTAATTATCTAAACTGA

Protein Analysis

119

Amino Acids

13.61

Weight (kDa)

6.85

Isoelectric Point (pI)

80.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 242
AciI CCGC 1 cut(s) 289
AcuI CTGAAG 1 cut(s) 123
AfiI CCNNNNNNNGG 1 cut(s) 197
AgsI TTSAA 1 cut(s) 334
AhdI GACNNNNNGTC 1 cut(s) 55
AluBI AGCT 1 cut(s) 224
AluI AGCT 1 cut(s) 224
Alw26I GTCTC 3 cut(s) 63, 156, 192
Aor13HI TCCGGA 1 cut(s) 242
AspLEI GCGC 1 cut(s) 91
BccI CCATC 1 cut(s) 113
BcoDI GTCTC 3 cut(s) 63, 156, 192
BfaI CTAG 1 cut(s) 279
BfmI CTRYAG 1 cut(s) 63
BfoI RGCGCY 1 cut(s) 92
BisI GCNGC 1 cut(s) 290
BlsI GCNGC 1 cut(s) 291
BmeRI GACNNNNNGTC 1 cut(s) 55
BmiI GGNNCC 1 cut(s) 165
BmrI ACTGGG 1 cut(s) 206
BmsI GCATC 2 cut(s) 12, 124
BmuI ACTGGG 1 cut(s) 206
BplI GAGNNNNNCTC 2 cut(s) 11, 43
BpmI CTGGAG 1 cut(s) 38
BsaI GGTCTC 1 cut(s) 192
BsaJI CCNNGG 2 cut(s) 123, 159
BsaWI WCCGGW 2 cut(s) 166, 242
BsaXI ACNNNNNCTCC 8 cut(s) 43, 73, 136, 166, 172, 202, 277, 307
Bsc4I CCNNNNNNNGG 1 cut(s) 197
Bse1I ACTGG 2 cut(s) 201, 311
BseAI TCCGGA 1 cut(s) 242
BseDI CCNNGG 2 cut(s) 123, 159
BseLI CCNNNNNNNGG 1 cut(s) 197
BseNI ACTGG 2 cut(s) 201, 311
BseRI GAGGAG 1 cut(s) 180
BsiSI CCGG 2 cut(s) 167, 243
BslI CCNNNNNNNGG 1 cut(s) 197
BsmAI GTCTC 3 cut(s) 63, 156, 192
BsmBI CGTCTC 1 cut(s) 156
Bso31I GGTCTC 1 cut(s) 192
Bsp13I TCCGGA 1 cut(s) 242
Bsp19I CCATGG 1 cut(s) 159
BspACI CCGC 1 cut(s) 289
BspEI TCCGGA 1 cut(s) 242
BspLI GGNNCC 1 cut(s) 165
BspTNI GGTCTC 1 cut(s) 192
BsrI ACTGG 2 cut(s) 201, 311
BssECI CCNNGG 2 cut(s) 123, 159
BssT1I CCWWGG 1 cut(s) 159
BstDSI CCRYGG 1 cut(s) 159
BstH2I RGCGCY 1 cut(s) 92
BstHHI GCGC 1 cut(s) 91
BstMAI GTCTC 3 cut(s) 63, 156, 192
BstSFI CTRYAG 1 cut(s) 63
BtgI CCRYGG 1 cut(s) 159
BtsI GCAGTG 1 cut(s) 272
BtsIMutI CAGTG 1 cut(s) 272
CfoI GCGC 1 cut(s) 91
CviAII CATG 2 cut(s) 80, 160
CviJI RGCY 2 cut(s) 211, 224
CviKI_1 RGCY 2 cut(s) 211, 224
DriI GACNNNNNGTC 1 cut(s) 55
Eam1105I GACNNNNNGTC 1 cut(s) 55
Eco130I CCWWGG 1 cut(s) 159
Eco31I GGTCTC 1 cut(s) 192
Eco57I CTGAAG 1 cut(s) 123
EcoT14I CCWWGG 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 159
Esp3I CGTCTC 1 cut(s) 156
FaeI CATG 2 cut(s) 83, 163
FaiI YATR 6 cut(s) 72, 81, 161, 219, 296, 304
FatI CATG 2 cut(s) 79, 159
Fnu4HI GCNGC 1 cut(s) 290
Fsp4HI GCNGC 1 cut(s) 290
FspBI CTAG 1 cut(s) 279
GlaI GCGC 1 cut(s) 90
GluI GCNGC 1 cut(s) 290
GsuI CTGGAG 1 cut(s) 38
HaeII RGCGCY 1 cut(s) 92
HapII CCGG 2 cut(s) 167, 243
HhaI GCGC 1 cut(s) 91
Hin1II CATG 2 cut(s) 83, 163
Hin6I GCGC 1 cut(s) 89
HinP1I GCGC 1 cut(s) 89
HinfI GANTC 5 cut(s) 11, 56, 119, 128, 239
HpaII CCGG 2 cut(s) 167, 243
Hpy188I TCNGA 6 cut(s) 49, 118, 127, 133, 142, 178
Hpy188III TCNNGA 2 cut(s) 17, 243
HpyAV CCTTC 3 cut(s) 165, 276, 328
HpyCH4V TGCA 1 cut(s) 70
Hsp92II CATG 2 cut(s) 83, 163
HspAI GCGC 1 cut(s) 89
Kpn2I TCCGGA 1 cut(s) 242
LpnPI CCDG 7 cut(s) 2, 21, 75, 180, 182, 256, 292
LweI GCATC 2 cut(s) 12, 124
MaeI CTAG 1 cut(s) 279
MboII GAAGA 3 cut(s) 329, 332, 335
MluCI AATT 1 cut(s) 343
MlyI GAGTC 1 cut(s) 65
MnlI CCTC 5 cut(s) 37, 133, 201, 252, 279
MroI TCCGGA 1 cut(s) 242
MseI TTAA 1 cut(s) 342
MspI CCGG 2 cut(s) 167, 243
NcoI CCATGG 1 cut(s) 159
NlaIII CATG 2 cut(s) 83, 163
NlaIV GGNNCC 1 cut(s) 165
PfeI GAWTC 4 cut(s) 11, 119, 128, 239
PkrI GCNGC 1 cut(s) 291
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
PspN4I GGNNCC 1 cut(s) 165
SaqAI TTAA 1 cut(s) 342
SatI GCNGC 1 cut(s) 290
SchI GAGTC 1 cut(s) 65
SetI ASST 3 cut(s) 226, 263, 339
SfaNI GCATC 2 cut(s) 12, 124
SfcI CTRYAG 1 cut(s) 63
Sse9I AATT 1 cut(s) 343
SsiI CCGC 1 cut(s) 289
SspMI CTAG 1 cut(s) 279
StyI CCWWGG 1 cut(s) 159
TasI AATT 1 cut(s) 343
TauI GCSGC 1 cut(s) 292
TfiI GAWTC 4 cut(s) 11, 119, 128, 239
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TscAI CASTG 1 cut(s) 279
TspDTI ATGAA 1 cut(s) 96
TspRI CASTG 1 cut(s) 279
XspI CTAG 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.