Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

3954768 .. 3955441

Gene Structure 674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGGCCCCGCATGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGAGTTCGATTCTCGGAATGCCCCTTTTTATTTACTTTTACTAATTTTTCTACCCCGGTTTGCCTTTTCGCCGCCGACTCGCTCCCTCAGTTACCAACCCTAACCCTCGCGATTCTTCGATTGAATCGCCCTGAACAATCACTTCTCTCGATTTTCCTACGACTTTACCCTAAAACCGAAAATGGTTTTTGGGCAAGTGGTGATCGGCCCGCCCGGGTCAGGGAAGACCACTTACTGCAATGGTATGTCTCAGTTCCTCCAGCTCATCGGAAGGAAAGTTGCAGTTGTCAATTTGGATCCTGCCAACGATGCATTGCCGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0006996 GO:0007275 GO:0008150 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010154 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048316 GO:0048507 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0071840 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:1902182

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATP_bind_1

Protein Analysis

123

Amino Acids

14.01

Weight (kDa)

8.8

Isoelectric Point (pI)

69.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	155
AciI	CCGC	3 cut(s)	9, 117, 255
AclWI	GGATC	2 cut(s)	336, 349
AfiI	CCNNNNNNNGG	2 cut(s)	264, 265
AgsI	TTSAA	1 cut(s)	169
AluBI	AGCT	1 cut(s)	308
AluI	AGCT	1 cut(s)	308
Alw26I	GTCTC	1 cut(s)	298
AlwI	GGATC	2 cut(s)	336, 349
Ama87I	CYCGRG	2 cut(s)	45, 258
AoxI	GGCC	2 cut(s)	4, 251
ApaI	GGGCCC	1 cut(s)	8
AspS9I	GGNCC	4 cut(s)	4, 5, 42, 252
AsuC2I	CCSGG	3 cut(s)	101, 259, 260
AsuHPI	GGTGA	1 cut(s)	257
AvaI	CYCGRG	2 cut(s)	45, 258
AvaII	GGWCC	1 cut(s)	42
BaeGI	GKGCMC	1 cut(s)	8
BamHI	GGATCC	1 cut(s)	341
BanII	GRGCYC	1 cut(s)	8
BarI	GAAGNNNNNNTAC	2 cut(s)	261, 293
BbsI	GAAGAC	1 cut(s)	276
BceAI	ACGGC	1 cut(s)	347
BcnI	CCSGG	3 cut(s)	101, 259, 260
BcoDI	GTCTC	1 cut(s)	298
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
Bme1390I	CCNGG	3 cut(s)	101, 259, 260
Bme18I	GGWCC	1 cut(s)	42
BmeT110I	CYCGRG	2 cut(s)	45, 258
BmgT120I	GGNCC	4 cut(s)	4, 5, 42, 252
BmiI	GGNNCC	4 cut(s)	6, 7, 44, 343
BmrFI	CCNGG	3 cut(s)	101, 259, 260
BmsI	GCATC	1 cut(s)	344
BpiI	GAAGAC	1 cut(s)	276
BpmI	CTGGAG	1 cut(s)	288
BpuMI	CCSGG	3 cut(s)	101, 259, 260
BsaJI	CCNNGG	2 cut(s)	99, 258
Bsc4I	CCNNNNNNNGG	2 cut(s)	264, 265
Bse3DI	GCAATG	2 cut(s)	290, 357
BseDI	CCNNGG	2 cut(s)	99, 258
BseLI	CCNNNNNNNGG	2 cut(s)	264, 265
BseMI	GCAATG	2 cut(s)	290, 357
BseMII	CTCAG	2 cut(s)	146, 309
BseSI	GKGCMC	1 cut(s)	8
Bsh1236I	CGCG	1 cut(s)	155
BshFI	GGCC	2 cut(s)	6, 253
BsiHKCI	CYCGRG	2 cut(s)	45, 258
BsiSI	CCGG	2 cut(s)	101, 259
BslFI	GGGAC	1 cut(s)	28
BslI	CCNNNNNNNGG	2 cut(s)	264, 265
BsmAI	GTCTC	1 cut(s)	298
BsmFI	GGGAC	1 cut(s)	28
BsmI	GAATGC	1 cut(s)	68
BsnI	GGCC	2 cut(s)	6, 253
BsoBI	CYCGRG	2 cut(s)	45, 258
Bsp120I	GGGCCC	1 cut(s)	4
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	2 cut(s)	247, 341
Bsp68I	TCGCGA	1 cut(s)	155
BspACI	CCGC	3 cut(s)	9, 117, 255
BspANI	GGCC	2 cut(s)	6, 253
BspCNI	CTCAG	2 cut(s)	145, 308
BspFNI	CGCG	1 cut(s)	155
BspLI	GGNNCC	4 cut(s)	6, 7, 44, 343
BspPI	GGATC	2 cut(s)	336, 349
BsrDI	GCAATG	2 cut(s)	290, 357
BssECI	CCNNGG	2 cut(s)	99, 258
BssMI	GATC	2 cut(s)	247, 341
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	2 cut(s)	132, 295
BstFNI	CGCG	1 cut(s)	155
BstKTI	GATC	2 cut(s)	250, 344
BstMAI	GTCTC	1 cut(s)	298
BstMBI	GATC	2 cut(s)	247, 341
BstMWI	GCNNNNNNNGC	2 cut(s)	33, 354
BstSCI	CCNGG	3 cut(s)	99, 257, 258
BstSLI	GKGCMC	1 cut(s)	8
BstUI	CGCG	1 cut(s)	155
BstV2I	GAAGAC	1 cut(s)	276
BstX2I	RGATCY	1 cut(s)	341
BstYI	RGATCY	1 cut(s)	341
BsuRI	GGCC	2 cut(s)	6, 253
BtuMI	TCGCGA	1 cut(s)	155
Cac8I	GCNNGC	1 cut(s)	255
Cfr13I	GGNCC	4 cut(s)	4, 5, 42, 252
Cfr9I	CCCGGG	1 cut(s)	258
CviAII	CATG	1 cut(s)	12
CviJI	RGCY	3 cut(s)	6, 253, 308
CviKI_1	RGCY	3 cut(s)	6, 253, 308
DdeI	CTNAG	2 cut(s)	132, 295
DpnI	GATC	2 cut(s)	249, 343
DpnII	GATC	2 cut(s)	247, 341
Eco24I	GRGCYC	1 cut(s)	8
Eco47I	GGWCC	1 cut(s)	42
Eco88I	CYCGRG	2 cut(s)	45, 258
EcoO109I	RGGNCCY	2 cut(s)	5, 42
EcoT22I	ATGCAT	1 cut(s)	359
EcoT38I	GRGCYC	1 cut(s)	8
FaeI	CATG	1 cut(s)	15
FaiI	YATR	4 cut(s)	13, 18, 291, 367
FaqI	GGGAC	1 cut(s)	28
FatI	CATG	1 cut(s)	11
FauI	CCCGC	2 cut(s)	16, 262
Fnu4HI	GCNGC	1 cut(s)	117
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	1 cut(s)	117
GluI	GCNGC	1 cut(s)	117
GsuI	CTGGAG	1 cut(s)	288
HaeIII	GGCC	2 cut(s)	6, 253
HapII	CCGG	2 cut(s)	101, 259
Hin1II	CATG	1 cut(s)	15
HinfI	GANTC	5 cut(s)	20, 54, 122, 157, 169
HpaII	CCGG	2 cut(s)	101, 259
HphI	GGTGA	1 cut(s)	257
Hpy188I	TCNGA	2 cut(s)	61, 315
Hpy188III	TCNNGA	3 cut(s)	45, 154, 193
HpyAV	CCTTC	1 cut(s)	310
HpyCH4V	TGCA	3 cut(s)	283, 327, 357
HpyF10VI	GCNNNNNNNGC	2 cut(s)	33, 354
HpyF3I	CTNAG	2 cut(s)	132, 295
Hsp92II	CATG	1 cut(s)	15
Kzo9I	GATC	2 cut(s)	247, 341
LmnI	GCTCC	1 cut(s)	132
LpnPI	CCDG	6 cut(s)	114, 189, 250, 272, 318, 358
LweI	GCATC	1 cut(s)	344
MaeIII	GTNAC	1 cut(s)	135
MalI	GATC	2 cut(s)	249, 343
MboI	GATC	2 cut(s)	247, 341
MboII	GAAGA	2 cut(s)	152, 281
MflI	RGATCY	1 cut(s)	341
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	2 cut(s)	88, 335
MlyI	GAGTC	1 cut(s)	116
MnlI	CCTC	4 cut(s)	33, 141, 161, 312
Mph1103I	ATGCAT	1 cut(s)	359
MspI	CCGG	2 cut(s)	101, 259
MspR9I	CCNGG	3 cut(s)	101, 259, 260
Mva1269I	GAATGC	1 cut(s)	68
MvnI	CGCG	1 cut(s)	155
MwoI	GCNNNNNNNGC	2 cut(s)	33, 354
NciI	CCSGG	3 cut(s)	101, 259, 260
NdeII	GATC	2 cut(s)	247, 341
NlaIII	CATG	1 cut(s)	15
NlaIV	GGNNCC	4 cut(s)	6, 7, 44, 343
NruI	TCGCGA	1 cut(s)	155
NsiI	ATGCAT	1 cut(s)	359
PctI	GAATGC	1 cut(s)	68
PfeI	GAWTC	4 cut(s)	20, 54, 157, 169
PkrI	GCNGC	1 cut(s)	118
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
PpuMI	RGGWCCY	1 cut(s)	42
Psp5II	RGGWCCY	1 cut(s)	42
PspN4I	GGNNCC	4 cut(s)	6, 7, 44, 343
PspOMI	GGGCCC	1 cut(s)	4
PspPI	GGNCC	4 cut(s)	4, 5, 42, 252
PspPPI	RGGWCCY	1 cut(s)	42
PsuI	RGATCY	1 cut(s)	341
RruI	TCGCGA	1 cut(s)	155
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	2 cut(s)	247, 341
Sau96I	GGNCC	4 cut(s)	4, 5, 42, 252
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	3 cut(s)	101, 259, 260
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	2 cut(s)	44, 310
SfaNI	GCATC	1 cut(s)	344
SinI	GGWCC	1 cut(s)	42
SmaI	CCCGGG	1 cut(s)	260
Sse9I	AATT	2 cut(s)	88, 335
SsiI	CCGC	3 cut(s)	9, 117, 255
StyD4I	CCNGG	3 cut(s)	99, 257, 258
TaqI	TCGA	3 cut(s)	52, 163, 194
TasI	AATT	2 cut(s)	88, 335
TauI	GCSGC	1 cut(s)	119
TfiI	GAWTC	4 cut(s)	20, 54, 157, 169
TspMI	CCCGGG	1 cut(s)	258
VpaK11BI	GGWCC	1 cut(s)	42
XmaI	CCCGGG	1 cut(s)	258
Zsp2I	ATGCAT	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.