Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

4195521 .. 4195899

Gene Structure 379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGAGCTGGTGGTGGGCCGGAGCTGTTGGCGCTGCTAAGAAAAAATTCGATGAAGAGGAACCGCCGCGAACTCCCCAGAGCGTGGGTCTCGTGATCGGCGTCACCGGCATAGTCGGCAACAGCCTCGCCGATCGATCCTTCCCCTCTCTGACACCCCTGGCGGCCCATGGAAGGTCTACGGTGTCGCGCGCCGTCCCCGCCCCAACTGGAACGCCGACCACCCTGTCGAGTACATCCAATGCGACATCTCCGATCCCGACGATGCCAAAACCAAGCTCTCTCCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008202 GO:0009611 GO:0010051 GO:0016491 GO:0016627 GO:0016628 GO:0032501 GO:0032502 GO:0035671 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050896 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

96

Amino Acids

9.83

Weight (kDa)

10.41

Isoelectric Point (pI)

54.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	223
AccB7I	CCANNNNNTGG	1 cut(s)	82
AccI	GTMKAC	1 cut(s)	176
AccII	CGCG	3 cut(s)	67, 187, 189
AciI	CCGC	4 cut(s)	62, 65, 161, 198
AclWI	GGATC	2 cut(s)	129, 247
AcsI	RAATTY	1 cut(s)	44
AcyI	GRCGYC	1 cut(s)	99
AfaI	GTAC	1 cut(s)	232
AfiI	CCNNNNNNNGG	2 cut(s)	82, 171
AjnI	CCWGG	1 cut(s)	156
AluBI	AGCT	3 cut(s)	6, 23, 276
AluI	AGCT	3 cut(s)	6, 23, 276
Alw26I	GTCTC	1 cut(s)	92
AlwI	GGATC	2 cut(s)	129, 247
AoxI	GGCC	2 cut(s)	15, 162
ApeKI	GCWGC	1 cut(s)	32
ApoI	RAATTY	1 cut(s)	44
Asp700I	GAANNNNTTC	1 cut(s)	44
AspLEI	GCGC	3 cut(s)	32, 189, 191
AspS9I	GGNCC	2 cut(s)	15, 163
AsuHPI	GGTGA	1 cut(s)	94
BauI	CACGAG	1 cut(s)	89
BbvI	GCAGC	1 cut(s)	19
BceAI	ACGGC	1 cut(s)	176
BcgI	CGANNNNNNTGC	2 cut(s)	106, 140
BciT130I	CCWGG	1 cut(s)	158
BcoDI	GTCTC	1 cut(s)	92
BfoI	RGCGCY	1 cut(s)	33
BisI	GCNGC	3 cut(s)	33, 65, 162
BlsI	GCNGC	3 cut(s)	34, 66, 163
Bme1390I	CCNGG	1 cut(s)	158
BmgT120I	GGNCC	2 cut(s)	15, 163
BmiI	GGNNCC	1 cut(s)	60
BmrFI	CCNGG	1 cut(s)	158
BmsI	GCATC	1 cut(s)	252
Bsa29I	ATCGAT	1 cut(s)	133
BsaHI	GRCGYC	1 cut(s)	99
BsaI	GGTCTC	1 cut(s)	92
BsaJI	CCNNGG	2 cut(s)	156, 166
Bsc4I	CCNNNNNNNGG	2 cut(s)	82, 171
Bse118I	RCCGGY	1 cut(s)	104
Bse1I	ACTGG	1 cut(s)	211
BseBI	CCWGG	1 cut(s)	158
BseCI	ATCGAT	1 cut(s)	133
BseDI	CCNNGG	2 cut(s)	156, 166
BseGI	GGATG	1 cut(s)	233
BseLI	CCNNNNNNNGG	2 cut(s)	82, 171
BseNI	ACTGG	1 cut(s)	211
BsePI	GCGCGC	1 cut(s)	187
BseXI	GCAGC	1 cut(s)	19
Bsh1236I	CGCG	3 cut(s)	67, 187, 189
Bsh1285I	CGRYCG	1 cut(s)	133
BshFI	GGCC	2 cut(s)	17, 164
BshVI	ATCGAT	1 cut(s)	133
BsiEI	CGRYCG	1 cut(s)	133
BsiSI	CCGG	2 cut(s)	18, 105
BslFI	GGGAC	1 cut(s)	179
BslI	CCNNNNNNNGG	2 cut(s)	82, 171
BsmAI	GTCTC	1 cut(s)	92
BsmFI	GGGAC	1 cut(s)	179
BsnI	GGCC	2 cut(s)	17, 164
Bso31I	GGTCTC	1 cut(s)	92
Bsp143I	GATC	4 cut(s)	93, 130, 134, 252
Bsp19I	CCATGG	1 cut(s)	166
BspACI	CCGC	4 cut(s)	62, 65, 161, 198
BspANI	GGCC	2 cut(s)	17, 164
BspDI	ATCGAT	1 cut(s)	133
BspFNI	CGCG	3 cut(s)	67, 187, 189
BspLI	GGNNCC	1 cut(s)	60
BspPI	GGATC	2 cut(s)	129, 247
BspTNI	GGTCTC	1 cut(s)	92
BsrFI	RCCGGY	1 cut(s)	104
BsrI	ACTGG	1 cut(s)	211
BssAI	RCCGGY	1 cut(s)	104
BssECI	CCNNGG	2 cut(s)	156, 166
BssHII	GCGCGC	1 cut(s)	187
BssMI	GATC	4 cut(s)	93, 130, 134, 252
BssNI	GRCGYC	1 cut(s)	99
BssSI	CACGAG	1 cut(s)	89
BssT1I	CCWWGG	1 cut(s)	166
Bst2BI	CACGAG	1 cut(s)	89
Bst2UI	CCWGG	1 cut(s)	158
Bst4CI	ACNGT	1 cut(s)	181
Bst6I	CTCTTC	1 cut(s)	48
BstACI	GRCGYC	1 cut(s)	99
BstC8I	GCNNGC	1 cut(s)	189
BstDEI	CTNAG	1 cut(s)	36
BstDSI	CCRYGG	1 cut(s)	166
BstF5I	GGATG	1 cut(s)	233
BstFNI	CGCG	3 cut(s)	67, 187, 189
BstH2I	RGCGCY	1 cut(s)	33
BstHHI	GCGC	3 cut(s)	32, 189, 191
BstKTI	GATC	4 cut(s)	96, 133, 137, 255
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	4 cut(s)	93, 130, 134, 252
BstMCI	CGRYCG	1 cut(s)	133
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 105, 114, 197
BstNI	CCWGG	1 cut(s)	158
BstSCI	CCNGG	1 cut(s)	156
BstUI	CGCG	3 cut(s)	67, 187, 189
BstV1I	GCAGC	1 cut(s)	19
Bsu15I	ATCGAT	1 cut(s)	133
BsuRI	GGCC	2 cut(s)	17, 164
BsuTUI	ATCGAT	1 cut(s)	133
BtgI	CCRYGG	1 cut(s)	166
BtsCI	GGATG	1 cut(s)	233
Cac8I	GCNNGC	1 cut(s)	189
CfoI	GCGC	3 cut(s)	32, 189, 191
Cfr10I	RCCGGY	1 cut(s)	104
Cfr13I	GGNCC	2 cut(s)	15, 163
ClaI	ATCGAT	1 cut(s)	133
CseI	GACGC	1 cut(s)	88
Csp6I	GTAC	1 cut(s)	231
CviAII	CATG	1 cut(s)	167
CviJI	RGCY	6 cut(s)	6, 17, 23, 123, 164, 276
CviKI_1	RGCY	6 cut(s)	6, 17, 23, 123, 164, 276
CviQI	GTAC	1 cut(s)	231
DdeI	CTNAG	1 cut(s)	36
DpnI	GATC	4 cut(s)	95, 132, 136, 254
DpnII	GATC	4 cut(s)	93, 130, 134, 252
DrdI	GACNNNNNNGTC	1 cut(s)	223
DseDI	GACNNNNNNGTC	1 cut(s)	223
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	166
Eco31I	GGTCTC	1 cut(s)	92
EcoRII	CCWGG	1 cut(s)	156
EcoT14I	CCWWGG	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	166
FaeI	CATG	1 cut(s)	170
FaiI	YATR	2 cut(s)	110, 168
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	1 cut(s)	166
FauI	CCCGC	1 cut(s)	205
FblI	GTMKAC	1 cut(s)	176
Fnu4HI	GCNGC	3 cut(s)	33, 65, 162
FokI	GGATG	1 cut(s)	220
Fsp4HI	GCNGC	3 cut(s)	33, 65, 162
GlaI	GCGC	3 cut(s)	31, 188, 190
GluI	GCNGC	3 cut(s)	33, 65, 162
HaeII	RGCGCY	1 cut(s)	33
HaeIII	GGCC	2 cut(s)	17, 164
HapII	CCGG	2 cut(s)	18, 105
HgaI	GACGC	1 cut(s)	88
HhaI	GCGC	3 cut(s)	32, 189, 191
Hin1I	GRCGYC	1 cut(s)	99
Hin1II	CATG	1 cut(s)	170
Hin6I	GCGC	3 cut(s)	30, 187, 189
HinP1I	GCGC	3 cut(s)	30, 187, 189
HpaII	CCGG	2 cut(s)	18, 105
HphI	GGTGA	1 cut(s)	94
Hpy166II	GTNNAC	1 cut(s)	177
Hpy188I	TCNGA	3 cut(s)	150, 252, 284
Hpy188III	TCNNGA	2 cut(s)	91, 256
Hpy8I	GTNNAC	1 cut(s)	177
Hpy99I	CGWCG	1 cut(s)	262
HpyAV	CCTTC	2 cut(s)	148, 165
HpyCH4III	ACNGT	1 cut(s)	181
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 105, 114, 197
HpyF3I	CTNAG	1 cut(s)	36
Hsp92I	GRCGYC	1 cut(s)	99
Hsp92II	CATG	1 cut(s)	170
HspAI	GCGC	3 cut(s)	30, 187, 189
Kzo9I	GATC	4 cut(s)	93, 130, 134, 252
LmnI	GCTCC	1 cut(s)	20
LpnPI	CCDG	7 cut(s)	31, 89, 118, 143, 170, 192, 236
Lsp1109I	GCAGC	1 cut(s)	19
LweI	GCATC	1 cut(s)	252
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	4 cut(s)	95, 132, 136, 254
MboI	GATC	4 cut(s)	93, 130, 134, 252
MboII	GAAGA	1 cut(s)	65
MluCI	AATT	1 cut(s)	44
MnlI	CCTC	3 cut(s)	49, 134, 154
MroXI	GAANNNNTTC	1 cut(s)	44
MspI	CCGG	2 cut(s)	18, 105
MspR9I	CCNGG	1 cut(s)	158
MvaI	CCWGG	1 cut(s)	158
MvnI	CGCG	3 cut(s)	67, 187, 189
MwoI	GCNNNNNNNGC	4 cut(s)	29, 105, 114, 197
NcoI	CCATGG	1 cut(s)	166
NdeII	GATC	4 cut(s)	93, 130, 134, 252
NlaIII	CATG	1 cut(s)	170
NlaIV	GGNNCC	1 cut(s)	60
NmuCI	GTSAC	1 cut(s)	100
PauI	GCGCGC	1 cut(s)	187
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PdmI	GAANNNNTTC	1 cut(s)	44
PflMI	CCANNNNNTGG	1 cut(s)	82
PkrI	GCNGC	3 cut(s)	34, 66, 163
Ple19I	CGATCG	1 cut(s)	133
Psp6I	CCWGG	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	156
PspN4I	GGNNCC	1 cut(s)	60
PspPI	GGNCC	2 cut(s)	15, 163
PteI	GCGCGC	1 cut(s)	187
PvuI	CGATCG	1 cut(s)	133
RsaI	GTAC	1 cut(s)	232
RsaNI	GTAC	1 cut(s)	231
SatI	GCNGC	3 cut(s)	33, 65, 162
Sau3AI	GATC	4 cut(s)	93, 130, 134, 252
Sau96I	GGNCC	2 cut(s)	15, 163
ScrFI	CCNGG	1 cut(s)	158
SetI	ASST	4 cut(s)	8, 25, 176, 278
SfaNI	GCATC	1 cut(s)	252
Sse9I	AATT	1 cut(s)	44
SsiI	CCGC	4 cut(s)	62, 65, 161, 198
StyD4I	CCNGG	1 cut(s)	156
StyI	CCWWGG	1 cut(s)	166
TaaI	ACNGT	1 cut(s)	181
TaqI	TCGA	3 cut(s)	48, 133, 227
TasI	AATT	1 cut(s)	44
TatI	WGTACW	1 cut(s)	230
TauI	GCSGC	2 cut(s)	67, 164
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	1 cut(s)	32
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	1 cut(s)	66
Van91I	CCANNNNNTGG	1 cut(s)	82
XapI	RAATTY	1 cut(s)	44
XmiI	GTMKAC	1 cut(s)	176
XmnI	GAANNNNTTC	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.