pycom15g07940

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Reverse (-)
4928258 .. 4929674
1417 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 645 bp
ATGGATGTGGGGGAGTTCATTGTTCCTGTTCCTTATGTAAAGCAAATCAAGTTGTCAACCGCAGGTGGCAGACTTATCATATCAAGTGATGGTGTCTGGGATGCTTTGTCTGCAGAAGAAGCTCTTGATTGTTGCCGTGGGATGCCACCGGACGCTGCAGCTGCACAAATTGTAAAGGATGCTGTAGGGCATAAGGGACTTCGGGATGATACAACCTGCATTGCGATCGATATTTTACCACAAGAGAAGCCACAAGCTTCATTACCCCAACCAAAGAGGCAGGGAAAAGGAGTGTTGTTTAAATCCATGTTTAAGAAAAAATCCTCGGAATCATCTTCTAGTGTTGAAAAAGAATATATTGAGCCAGACGAGGTGGAGGAGTTATTTGAGGAAGGTTCTGCTTCGCTTTCCGAAAGGTTAGATACAAAATACCCGCTCTGCAACATGTTCAAATTGTTTATGTGTGCAGTTTGTCAAGTAGAAATTAAACCAGGAGAGGGTATTTCGATACACACTGGATCATCAAACCCAGGAAAATTGCGACCTTGGGATGGCCCCTTCCTCTGCTCGAGTTGCCAAGGGAAAAAAGAGGCTATGGAGGGTAAAAGACCATCAGGAAGAAGACATGATAGCGATAGTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

215

Amino Acids

23.31

Weight (kDa)

5.39

Isoelectric Point (pI)

45.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 53
Acc36I ACCTGC 2 cut(s) 53, 224
AccBSI CCGCTC 1 cut(s) 436
AciI CCGC 2 cut(s) 60, 434
AclWI GGATC 1 cut(s) 526
AfiI CCNNNNNNNGG 2 cut(s) 497, 551
AflIII ACRYGT 1 cut(s) 444
AgsI TTSAA 2 cut(s) 347, 451
AjnI CCWGG 2 cut(s) 490, 529
AluBI AGCT 3 cut(s) 122, 161, 257
AluI AGCT 3 cut(s) 122, 161, 257
AlwI GGATC 1 cut(s) 526
Ama87I CYCGRG 1 cut(s) 568
AoxI GGCC 1 cut(s) 553
ApeKI GCWGC 3 cut(s) 155, 158, 161
AspS9I GGNCC 1 cut(s) 554
AvaI CYCGRG 1 cut(s) 568
BbsI GAAGAC 1 cut(s) 628
BbvI GCAGC 3 cut(s) 142, 148, 170
BccI CCATC 3 cut(s) 83, 545, 619
BceAI ACGGC 1 cut(s) 120
BcgI CGANNNNNNTGC 2 cut(s) 208, 242
BciT130I CCWGG 2 cut(s) 492, 531
BfaI CTAG 1 cut(s) 339
BfmI CTRYAG 3 cut(s) 111, 156, 183
BfuAI ACCTGC 2 cut(s) 53, 224
BisI GCNGC 3 cut(s) 156, 159, 162
BlsI GCNGC 3 cut(s) 157, 160, 163
Bme1390I CCNGG 2 cut(s) 492, 531
BmeT110I CYCGRG 1 cut(s) 568
BmgT120I GGNCC 1 cut(s) 554
BmiI GGNNCC 1 cut(s) 556
BmrFI CCNGG 2 cut(s) 492, 531
BmsI GCATC 3 cut(s) 91, 132, 169
BpiI GAAGAC 1 cut(s) 628
Bsa29I ATCGAT 1 cut(s) 228
BsaJI CCNNGG 5 cut(s) 136, 324, 529, 545, 577
BsaWI WCCGGW 1 cut(s) 148
Bsc4I CCNNNNNNNGG 2 cut(s) 497, 551
Bse1I ACTGG 1 cut(s) 520
Bse3DI GCAATG 1 cut(s) 219
BseBI CCWGG 2 cut(s) 492, 531
BseCI ATCGAT 1 cut(s) 228
BseDI CCNNGG 5 cut(s) 136, 324, 529, 545, 577
BseGI GGATG 6 cut(s) 10, 106, 147, 184, 211, 556
BseLI CCNNNNNNNGG 2 cut(s) 497, 551
BseMI GCAATG 1 cut(s) 219
BseNI ACTGG 1 cut(s) 520
BseRI GAGGAG 1 cut(s) 392
BseXI GCAGC 3 cut(s) 142, 148, 170
BsgI GTGCAG 2 cut(s) 147, 486
Bsh1285I CGRYCG 1 cut(s) 228
BshFI GGCC 1 cut(s) 555
BshVI ATCGAT 1 cut(s) 228
BsiEI CGRYCG 1 cut(s) 228
BsiHKCI CYCGRG 1 cut(s) 568
BsiSI CCGG 1 cut(s) 149
BslFI GGGAC 1 cut(s) 210
BslI CCNNNNNNNGG 2 cut(s) 497, 551
BsmFI GGGAC 1 cut(s) 210
BsnI GGCC 1 cut(s) 555
BsoBI CYCGRG 1 cut(s) 568
Bsp143I GATC 2 cut(s) 225, 518
BspACI CCGC 2 cut(s) 60, 434
BspANI GGCC 1 cut(s) 555
BspDI ATCGAT 1 cut(s) 228
BspLI GGNNCC 1 cut(s) 556
BspMAI CTGCAG 2 cut(s) 115, 160
BspMI ACCTGC 2 cut(s) 53, 224
BspPI GGATC 1 cut(s) 526
BsrBI CCGCTC 1 cut(s) 436
BsrDI GCAATG 1 cut(s) 219
BsrI ACTGG 1 cut(s) 520
BssECI CCNNGG 5 cut(s) 136, 324, 529, 545, 577
BssMI GATC 2 cut(s) 225, 518
BssT1I CCWWGG 2 cut(s) 545, 577
Bst2UI CCWGG 2 cut(s) 492, 531
BstDSI CCRYGG 1 cut(s) 136
BstF5I GGATG 6 cut(s) 10, 106, 147, 184, 211, 556
BstKTI GATC 2 cut(s) 228, 521
BstMBI GATC 2 cut(s) 225, 518
BstMCI CGRYCG 1 cut(s) 228
BstMWI GCNNNNNNNGC 4 cut(s) 110, 119, 161, 573
BstNI CCWGG 2 cut(s) 492, 531
BstNSI RCATGY 1 cut(s) 448
BstSCI CCNGG 2 cut(s) 490, 529
BstSFI CTRYAG 3 cut(s) 111, 156, 183
BstV1I GCAGC 3 cut(s) 142, 148, 170
BstV2I GAAGAC 1 cut(s) 628
Bsu15I ATCGAT 1 cut(s) 228
BsuRI GGCC 1 cut(s) 555
BsuTUI ATCGAT 1 cut(s) 228
BtgI CCRYGG 1 cut(s) 136
BtsCI GGATG 6 cut(s) 10, 106, 147, 184, 211, 556
BtsIMutI CAGTG 1 cut(s) 513
BveI ACCTGC 2 cut(s) 53, 224
Cfr13I GGNCC 1 cut(s) 554
ClaI ATCGAT 1 cut(s) 228
CseI GACGC 1 cut(s) 161
CviAII CATG 3 cut(s) 307, 445, 626
CviJI RGCY 7 cut(s) 122, 161, 250, 257, 364, 555, 593
CviKI_1 RGCY 7 cut(s) 122, 161, 250, 257, 364, 555, 593
DpnI GATC 2 cut(s) 227, 520
DpnII GATC 2 cut(s) 225, 518
DraI TTTAAA 1 cut(s) 301
Eco130I CCWWGG 2 cut(s) 545, 577
Eco88I CYCGRG 1 cut(s) 568
EcoRII CCWGG 2 cut(s) 490, 529
EcoT14I CCWWGG 2 cut(s) 545, 577
ErhI CCWWGG 2 cut(s) 545, 577
FaeI CATG 3 cut(s) 310, 448, 629
FaiI YATR 9 cut(s) 36, 80, 192, 308, 357, 446, 461, 596, 627
FalI AAGNNNNNCTT 2 cut(s) 108, 140
FaqI GGGAC 1 cut(s) 210
FatI CATG 3 cut(s) 306, 444, 625
FauI CCCGC 1 cut(s) 441
Fnu4HI GCNGC 3 cut(s) 156, 159, 162
FokI GGATG 6 cut(s) 17, 113, 154, 191, 218, 563
Fsp4HI GCNGC 3 cut(s) 156, 159, 162
FspBI CTAG 1 cut(s) 339
GluI GCNGC 3 cut(s) 156, 159, 162
HaeIII GGCC 1 cut(s) 555
HapII CCGG 1 cut(s) 149
HgaI GACGC 1 cut(s) 161
Hin1II CATG 3 cut(s) 310, 448, 629
HincII GTYRAC 1 cut(s) 57
HindII GTYRAC 1 cut(s) 57
HindIII AAGCTT 1 cut(s) 255
HinfI GANTC 1 cut(s) 329
HpaII CCGG 1 cut(s) 149
Hpy166II GTNNAC 1 cut(s) 57
Hpy188I TCNGA 2 cut(s) 328, 412
Hpy188III TCNNGA 3 cut(s) 125, 203, 615
Hpy8I GTNNAC 1 cut(s) 57
HpyAV CCTTC 2 cut(s) 386, 568
HpyCH4V TGCA 6 cut(s) 113, 158, 164, 219, 441, 467
HpyF10VI GCNNNNNNNGC 4 cut(s) 110, 119, 161, 573
Hsp92II CATG 3 cut(s) 310, 448, 629
Kzo9I GATC 2 cut(s) 225, 518
Lsp1109I GCAGC 3 cut(s) 142, 148, 170
LweI GCATC 3 cut(s) 91, 132, 169
MaeI CTAG 1 cut(s) 339
MalI GATC 2 cut(s) 227, 520
MbiI CCGCTC 1 cut(s) 436
MboI GATC 2 cut(s) 225, 518
MboII GAAGA 4 cut(s) 128, 327, 630, 633
MluCI AATT 4 cut(s) 168, 452, 483, 536
MnlI CCTC 9 cut(s) 270, 334, 364, 370, 382, 490, 572, 583, 592
MseI TTAA 3 cut(s) 300, 312, 486
MspA1I CMGCKG 1 cut(s) 161
MspI CCGG 1 cut(s) 149
MspR9I CCNGG 2 cut(s) 492, 531
MvaI CCWGG 2 cut(s) 492, 531
MwoI GCNNNNNNNGC 4 cut(s) 110, 119, 161, 573
NdeII GATC 2 cut(s) 225, 518
NlaIII CATG 3 cut(s) 310, 448, 629
NlaIV GGNNCC 1 cut(s) 556
NspI RCATGY 1 cut(s) 448
PaeR7I CTCGAG 1 cut(s) 568
PaqCI CACCTGC 1 cut(s) 53
PciI ACATGT 1 cut(s) 444
PfeI GAWTC 1 cut(s) 329
PkrI GCNGC 3 cut(s) 157, 160, 163
Ple19I CGATCG 1 cut(s) 228
PscI ACATGT 1 cut(s) 444
Psp6I CCWGG 2 cut(s) 490, 529
PspGI CCWGG 2 cut(s) 490, 529
PspN4I GGNNCC 1 cut(s) 556
PspPI GGNCC 1 cut(s) 554
PspXI VCTCGAGB 1 cut(s) 568
PstI CTGCAG 2 cut(s) 115, 160
PvuI CGATCG 1 cut(s) 228
PvuII CAGCTG 1 cut(s) 161
SaqAI TTAA 3 cut(s) 300, 312, 486
SatI GCNGC 3 cut(s) 156, 159, 162
Sau3AI GATC 2 cut(s) 225, 518
Sau96I GGNCC 1 cut(s) 554
ScrFI CCNGG 2 cut(s) 492, 531
SetI ASST 9 cut(s) 67, 124, 163, 218, 259, 375, 397, 419, 547
SfaNI GCATC 3 cut(s) 91, 132, 169
SfcI CTRYAG 3 cut(s) 111, 156, 183
Sfr274I CTCGAG 1 cut(s) 568
SlaI CTCGAG 1 cut(s) 568
SmlI CTYRAG 1 cut(s) 568
SmoI CTYRAG 1 cut(s) 568
Sse9I AATT 4 cut(s) 168, 452, 483, 536
SsiI CCGC 2 cut(s) 60, 434
SspMI CTAG 1 cut(s) 339
StyD4I CCNGG 2 cut(s) 490, 529
StyI CCWWGG 2 cut(s) 545, 577
TaqI TCGA 3 cut(s) 228, 506, 569
TasI AATT 4 cut(s) 168, 452, 483, 536
TfiI GAWTC 1 cut(s) 329
Tru1I TTAA 3 cut(s) 300, 312, 486
Tru9I TTAA 3 cut(s) 300, 312, 486
TscAI CASTG 1 cut(s) 520
TseI GCWGC 3 cut(s) 155, 158, 161
TspDTI ATGAA 2 cut(s) 7, 249
TspRI CASTG 1 cut(s) 520
XceI RCATGY 1 cut(s) 448
XhoI CTCGAG 1 cut(s) 568
XspI CTAG 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.