pycom15g08000

origin recognition complex subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Reverse (-)
4958478 .. 4958753
276 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 276 bp
ATGGGGATGAACGACGGAGAGAACGAAGAGTTTGGGTTCTCCAGAAACTACTTTCTGGCAAAGGAGCTCCGCGGTTCCGGCAAGAAATCGCAGTCGAAGATCTCAGATATCGATATCGTCGACGAACAGGTAATGCTGGGTCGCCTTCAATTCCTTCAAAATTTCCAAATTTTTTTGTTAATTTTGTTAAAGCTTGAAACTTTGGCCGGAACTGGTTGCGGCGGCGGCTCAAATCGAACCCAAACACGAGAAAGAGGTGAAGGATGTGATGAATAG

Protein Analysis

92

Amino Acids

10.14

Weight (kDa)

4.97

Isoelectric Point (pI)

26.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 120
AccII CGCG 1 cut(s) 72
AciI CCGC 5 cut(s) 70, 72, 219, 222, 225
AcoI YGGCCR 1 cut(s) 204
AcsI RAATTY 2 cut(s) 160, 168
AgsI TTSAA 3 cut(s) 149, 158, 197
AluBI AGCT 2 cut(s) 67, 193
AluI AGCT 2 cut(s) 67, 193
Alw21I GWGCWC 1 cut(s) 69
AoxI GGCC 1 cut(s) 204
ApoI RAATTY 2 cut(s) 160, 168
AsuHPI GGTGA 1 cut(s) 269
BanII GRGCYC 1 cut(s) 69
BauI CACGAG 1 cut(s) 246
Bbv12I GWGCWC 1 cut(s) 69
BglII AGATCT 1 cut(s) 99
BisI GCNGC 3 cut(s) 220, 223, 226
BlsI GCNGC 3 cut(s) 221, 224, 227
BmiI GGNNCC 1 cut(s) 76
BpmI CTGGAG 1 cut(s) 25
Bsa29I ATCGAT 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 70
Bse1I ACTGG 1 cut(s) 217
BseCI ATCGAT 1 cut(s) 111
BseDI CCNNGG 1 cut(s) 70
BseGI GGATG 2 cut(s) 12, 269
BseMII CTCAG 1 cut(s) 117
BseNI ACTGG 1 cut(s) 217
BseYI CCCAGC 1 cut(s) 136
Bsh1236I CGCG 1 cut(s) 72
BshFI GGCC 1 cut(s) 206
BshVI ATCGAT 1 cut(s) 111
BsiHKAI GWGCWC 1 cut(s) 69
BsiSI CCGG 2 cut(s) 78, 207
BsnI GGCC 1 cut(s) 206
Bsp1286I GDGCHC 1 cut(s) 69
Bsp143I GATC 1 cut(s) 99
BspACI CCGC 5 cut(s) 70, 72, 219, 222, 225
BspANI GGCC 1 cut(s) 206
BspCNI CTCAG 1 cut(s) 116
BspDI ATCGAT 1 cut(s) 111
BspFNI CGCG 1 cut(s) 72
BspLI GGNNCC 1 cut(s) 76
BsrI ACTGG 1 cut(s) 217
BssECI CCNNGG 1 cut(s) 70
BssMI GATC 1 cut(s) 99
BssSI CACGAG 1 cut(s) 246
Bst2BI CACGAG 1 cut(s) 246
Bst6I CTCTTC 1 cut(s) 21
BstDEI CTNAG 1 cut(s) 103
BstDSI CCRYGG 1 cut(s) 70
BstF5I GGATG 2 cut(s) 12, 269
BstFNI CGCG 1 cut(s) 72
BstKTI GATC 1 cut(s) 102
BstMBI GATC 1 cut(s) 99
BstMWI GCNNNNNNNGC 2 cut(s) 78, 225
BstUI CGCG 1 cut(s) 72
BstX2I RGATCY 1 cut(s) 99
BstYI RGATCY 1 cut(s) 99
Bsu15I ATCGAT 1 cut(s) 111
BsuRI GGCC 1 cut(s) 206
BsuTUI ATCGAT 1 cut(s) 111
BtgI CCRYGG 1 cut(s) 70
BtsCI GGATG 2 cut(s) 12, 269
Cfr42I CCGCGG 1 cut(s) 73
ClaI ATCGAT 1 cut(s) 111
CviJI RGCY 4 cut(s) 67, 193, 206, 228
CviKI_1 RGCY 4 cut(s) 67, 193, 206, 228
DdeI CTNAG 1 cut(s) 103
DpnI GATC 1 cut(s) 101
DpnII GATC 1 cut(s) 99
EaeI YGGCCR 1 cut(s) 204
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
Ecl136II GAGCTC 1 cut(s) 67
Eco24I GRGCYC 1 cut(s) 69
Eco32I GATATC 2 cut(s) 109, 115
Eco53kI GAGCTC 1 cut(s) 67
EcoICRI GAGCTC 1 cut(s) 67
EcoRV GATATC 2 cut(s) 109, 115
EcoT38I GRGCYC 1 cut(s) 69
FblI GTMKAC 1 cut(s) 120
Fnu4HI GCNGC 3 cut(s) 220, 223, 226
FokI GGATG 1 cut(s) 19
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 3 cut(s) 220, 223, 226
GluI GCNGC 3 cut(s) 220, 223, 226
GsaI CCCAGC 1 cut(s) 140
GsuI CTGGAG 1 cut(s) 25
HaeIII GGCC 1 cut(s) 206
HapII CCGG 2 cut(s) 78, 207
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HindIII AAGCTT 1 cut(s) 191
HpaII CCGG 2 cut(s) 78, 207
HphI GGTGA 1 cut(s) 269
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 1 cut(s) 106
Hpy188III TCNNGA 1 cut(s) 42
Hpy8I GTNNAC 1 cut(s) 121
Hpy99I CGWCG 3 cut(s) 17, 122, 125
HpyAV CCTTC 3 cut(s) 155, 164, 254
HpyF10VI GCNNNNNNNGC 2 cut(s) 78, 225
HpyF3I CTNAG 1 cut(s) 103
KspI CCGCGG 1 cut(s) 73
Kzo9I GATC 1 cut(s) 99
LmnI GCTCC 2 cut(s) 64, 72
LpnPI CCDG 7 cut(s) 41, 55, 91, 113, 122, 198, 220
MalI GATC 1 cut(s) 101
MboI GATC 1 cut(s) 99
MboII GAAGA 2 cut(s) 38, 109
MflI RGATCY 1 cut(s) 99
MhlI GDGCHC 1 cut(s) 69
MluCI AATT 4 cut(s) 149, 160, 168, 180
MnlI CCTC 1 cut(s) 248
MseI TTAA 2 cut(s) 179, 188
MspA1I CMGCKG 1 cut(s) 72
MspI CCGG 2 cut(s) 78, 207
MvnI CGCG 1 cut(s) 72
MwoI GCNNNNNNNGC 2 cut(s) 78, 225
NdeII GATC 1 cut(s) 99
NlaIV GGNNCC 1 cut(s) 76
PcsI WCGNNNNNNNCGW 2 cut(s) 21, 117
PkrI GCNGC 3 cut(s) 221, 224, 227
Psp124BI GAGCTC 1 cut(s) 69
PspFI CCCAGC 1 cut(s) 136
PspN4I GGNNCC 1 cut(s) 76
PsuI RGATCY 1 cut(s) 99
SacI GAGCTC 1 cut(s) 69
SacII CCGCGG 1 cut(s) 73
SalI GTCGAC 1 cut(s) 119
SaqAI TTAA 2 cut(s) 179, 188
SatI GCNGC 3 cut(s) 220, 223, 226
Sau3AI GATC 1 cut(s) 99
SduI GDGCHC 1 cut(s) 69
SetI ASST 4 cut(s) 69, 132, 195, 259
Sfr303I CCGCGG 1 cut(s) 73
SgrBI CCGCGG 1 cut(s) 73
SgrDI CGTCGACG 1 cut(s) 119
Sse9I AATT 4 cut(s) 149, 160, 168, 180
SsiI CCGC 5 cut(s) 70, 72, 219, 222, 225
SstI GAGCTC 1 cut(s) 69
TaqI TCGA 4 cut(s) 95, 111, 120, 235
TasI AATT 4 cut(s) 149, 160, 168, 180
TauI GCSGC 3 cut(s) 222, 225, 228
Tru1I TTAA 2 cut(s) 179, 188
Tru9I TTAA 2 cut(s) 179, 188
TspDTI ATGAA 1 cut(s) 23
TspGWI ACGGA 1 cut(s) 30
XapI RAATTY 2 cut(s) 160, 168
XmiI GTMKAC 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.