pycom15g08220

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Reverse (-)
5112705 .. 5113248
544 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 411 bp
ATGCTCTCCTTTTGGATATGGAGCCTTGGAAGAACTAGGACCATTCAGAATTTGATTATAAAAGGAACAAATGAATGGCATGCAGTGGCAAACGTGCTCTTCTTGGAGACTCCGTTAGGGACTGGGTTCTCATATTCAAATACATCGTCTGACTATAAAACTGTGGGTGATCAGAGCACAGCTGAGGACAACTACGTTTTCCTTGTAAACTGGTTGGAGAGATTTCCCCAATATAAAACCAGGGATTTGTTCATCACTGGAGAGAGTAATGCAGGCCATTACGCACCTGAACTTGCTTACACCATTCTCTCTAACAACAATGTCACCAATCAAACACAAATCAATCTCAAAGGAATTGCAGTGAGTACTCGATTAATTTGGATTTATTTGCGTCCTAATGCTAAACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

137

Amino Acids

15.52

Weight (kDa)

7.99

Isoelectric Point (pI)

19.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 21 - 121 3.5e-39 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 59
AcsI RAATTY 1 cut(s) 49
AfaI GTAC 1 cut(s) 367
AgsI TTSAA 1 cut(s) 138
AjnI CCWGG 1 cut(s) 239
AluBI AGCT 1 cut(s) 182
AluI AGCT 1 cut(s) 182
Alw21I GWGCWC 2 cut(s) 99, 179
Alw26I GTCTC 1 cut(s) 101
AoxI GGCC 1 cut(s) 274
ApoI RAATTY 1 cut(s) 49
ArsI GACNNNNNNTTYG 2 cut(s) 131, 163
AseI ATTAAT 1 cut(s) 374
AspS9I GGNCC 1 cut(s) 39
AsuHPI GGTGA 2 cut(s) 179, 316
AvaII GGWCC 1 cut(s) 39
Bbv12I GWGCWC 2 cut(s) 99, 179
BbvCI CCTCAGC 1 cut(s) 183
BciT130I CCWGG 1 cut(s) 241
BclI TGATCA 1 cut(s) 169
BcoDI GTCTC 1 cut(s) 101
BfaI CTAG 1 cut(s) 36
BmcAI AGTACT 1 cut(s) 367
Bme1390I CCNGG 1 cut(s) 241
Bme18I GGWCC 1 cut(s) 39
BmgT120I GGNCC 1 cut(s) 39
BmiI GGNNCC 1 cut(s) 23
BmrFI CCNGG 1 cut(s) 241
BmrI ACTGGG 1 cut(s) 132
BmuI ACTGGG 1 cut(s) 132
BpmI CTGGAG 1 cut(s) 279
Bpu10I CCTNAGC 1 cut(s) 183
BsaJI CCNNGG 2 cut(s) 25, 240
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bse1I ACTGG 3 cut(s) 127, 215, 262
BseBI CCWGG 1 cut(s) 241
BseDI CCNNGG 2 cut(s) 25, 240
BseMII CTCAG 1 cut(s) 174
BseNI ACTGG 3 cut(s) 127, 215, 262
BshFI GGCC 1 cut(s) 276
BsiHKAI GWGCWC 2 cut(s) 99, 179
BslFI GGGAC 1 cut(s) 133
BsmAI GTCTC 1 cut(s) 101
BsmFI GGGAC 1 cut(s) 133
BsnI GGCC 1 cut(s) 276
Bsp1286I GDGCHC 2 cut(s) 99, 179
Bsp143I GATC 1 cut(s) 169
BspANI GGCC 1 cut(s) 276
BspCNI CTCAG 1 cut(s) 175
BspLI GGNNCC 1 cut(s) 23
BspQI GCTCTTC 1 cut(s) 104
BsrI ACTGG 3 cut(s) 127, 215, 262
BssECI CCNNGG 2 cut(s) 25, 240
BssMI GATC 1 cut(s) 169
BssT1I CCWWGG 1 cut(s) 25
Bst2UI CCWGG 1 cut(s) 241
Bst4CI ACNGT 1 cut(s) 163
Bst6I CTCTTC 1 cut(s) 104
BstC8I GCNNGC 2 cut(s) 81, 274
BstDEI CTNAG 1 cut(s) 183
BstKTI GATC 1 cut(s) 172
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 1 cut(s) 169
BstNI CCWGG 1 cut(s) 241
BstNSI RCATGY 1 cut(s) 83
BstSCI CCNGG 1 cut(s) 239
BsuRI GGCC 1 cut(s) 276
BtsI GCAGTG 2 cut(s) 90, 366
BtsIMutI CAGTG 3 cut(s) 90, 255, 366
Cac8I GCNNGC 2 cut(s) 81, 274
Cfr13I GGNCC 1 cut(s) 39
CseI GACGC 1 cut(s) 380
Csp6I GTAC 1 cut(s) 366
CviAII CATG 2 cut(s) 80, 408
CviJI RGCY 3 cut(s) 24, 182, 276
CviKI_1 RGCY 3 cut(s) 24, 182, 276
CviQI GTAC 1 cut(s) 366
DdeI CTNAG 1 cut(s) 183
DpnI GATC 1 cut(s) 171
DpnII GATC 1 cut(s) 169
Eam1104I CTCTTC 1 cut(s) 104
EarI CTCTTC 1 cut(s) 104
Eco130I CCWWGG 1 cut(s) 25
Eco47I GGWCC 1 cut(s) 39
EcoRII CCWGG 1 cut(s) 239
EcoT14I CCWWGG 1 cut(s) 25
ErhI CCWWGG 1 cut(s) 25
FaeI CATG 2 cut(s) 83, 411
FaiI YATR 7 cut(s) 19, 59, 81, 133, 156, 234, 409
FaqI GGGAC 1 cut(s) 133
FatI CATG 2 cut(s) 79, 407
FbaI TGATCA 1 cut(s) 169
FspBI CTAG 1 cut(s) 36
GsuI CTGGAG 1 cut(s) 279
HaeIII GGCC 1 cut(s) 276
HgaI GACGC 1 cut(s) 380
Hin1II CATG 2 cut(s) 83, 411
HinfI GANTC 1 cut(s) 109
HphI GGTGA 2 cut(s) 179, 316
Hpy166II GTNNAC 1 cut(s) 208
Hpy188I TCNGA 3 cut(s) 48, 151, 174
Hpy8I GTNNAC 1 cut(s) 208
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4IV ACGT 2 cut(s) 93, 195
HpyCH4V TGCA 3 cut(s) 83, 272, 359
HpyF3I CTNAG 1 cut(s) 183
HpySE526I ACGT 2 cut(s) 93, 195
Hsp92II CATG 2 cut(s) 83, 411
Ksp22I TGATCA 1 cut(s) 169
Kzo9I GATC 1 cut(s) 169
LguI GCTCTTC 1 cut(s) 104
LmnI GCTCC 1 cut(s) 21
LpnPI CCDG 7 cut(s) 108, 196, 226, 243, 253, 258, 300
MaeI CTAG 1 cut(s) 36
MaeII ACGT 2 cut(s) 93, 195
MaeIII GTNAC 1 cut(s) 322
MalI GATC 1 cut(s) 171
MboI GATC 1 cut(s) 169
MboII GAAGA 2 cut(s) 42, 91
MhlI GDGCHC 2 cut(s) 99, 179
MluCI AATT 3 cut(s) 49, 354, 375
MlyI GAGTC 1 cut(s) 103
MmeI TCCRAC 1 cut(s) 195
MnlI CCTC 1 cut(s) 178
MseI TTAA 1 cut(s) 374
MspA1I CMGCKG 1 cut(s) 182
MspR9I CCNGG 1 cut(s) 241
MvaI CCWGG 1 cut(s) 241
NdeII GATC 1 cut(s) 169
NlaIII CATG 2 cut(s) 83, 411
NlaIV GGNNCC 1 cut(s) 23
NmuCI GTSAC 1 cut(s) 322
NspI RCATGY 1 cut(s) 83
PaeI GCATGC 1 cut(s) 83
PciSI GCTCTTC 1 cut(s) 104
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
PshBI ATTAAT 1 cut(s) 374
PsiI TTATAA 1 cut(s) 59
Psp6I CCWGG 1 cut(s) 239
PspGI CCWGG 1 cut(s) 239
PspN4I GGNNCC 1 cut(s) 23
PspPI GGNCC 1 cut(s) 39
PvuII CAGCTG 1 cut(s) 182
RsaI GTAC 1 cut(s) 367
RsaNI GTAC 1 cut(s) 366
SapI GCTCTTC 1 cut(s) 104
SaqAI TTAA 1 cut(s) 374
Sau3AI GATC 1 cut(s) 169
Sau96I GGNCC 1 cut(s) 39
ScaI AGTACT 1 cut(s) 367
SchI GAGTC 1 cut(s) 103
ScrFI CCNGG 1 cut(s) 241
SduI GDGCHC 2 cut(s) 99, 179
SetI ASST 4 cut(s) 96, 184, 198, 289
SinI GGWCC 1 cut(s) 39
SphI GCATGC 1 cut(s) 83
Sse9I AATT 3 cut(s) 49, 354, 375
SspMI CTAG 1 cut(s) 36
StyD4I CCNGG 1 cut(s) 239
StyI CCWWGG 1 cut(s) 25
TaaI ACNGT 1 cut(s) 163
TaiI ACGT 2 cut(s) 96, 198
TaqI TCGA 1 cut(s) 370
TasI AATT 3 cut(s) 49, 354, 375
TatI WGTACW 1 cut(s) 365
Tru1I TTAA 1 cut(s) 374
Tru9I TTAA 1 cut(s) 374
TscAI CASTG 3 cut(s) 90, 262, 366
TseFI GTSAC 1 cut(s) 322
Tsp45I GTSAC 1 cut(s) 322
TspDTI ATGAA 2 cut(s) 87, 241
TspGWI ACGGA 1 cut(s) 102
TspRI CASTG 3 cut(s) 90, 262, 366
VpaK11BI GGWCC 1 cut(s) 39
VspI ATTAAT 1 cut(s) 374
XapI RAATTY 1 cut(s) 49
XceI RCATGY 1 cut(s) 83
XspI CTAG 1 cut(s) 36
ZrmI AGTACT 1 cut(s) 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.