Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

5847596 .. 5849395

Gene Structure 1800 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGATACTTCTTTACTGCCACCTCAACTTCACTGCTGGAACTCCATCCTGCCGGACACACCAATGCCAAAAGCTCTCAGTGAACTTGTCAAACCAGACCACACTGGTGTTGCCAAGGAAGACTTGTCTTTTTCAGCCAAGATTATGCCCGAAACTGCTGGTGGTGTATTTTTGTAAATTACGATGGAGAGACATTAGTCAAGTAATTAATTTCTTCTTGGAGAAGGACATGCATTCTGGAAATGCAAAGAAATATCGCTTAGCTAAAAATTCGACTAGGGCTATTTTCCTGTCCCGCAAAACTGCAGAGTCGATCCCCTTCTCTTCTCACAAAATGCCAGAAATTCTCAACCAATTTTCATTGAAATCAGGCTCTATGGAACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004457 GO:0004460 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0006082 GO:0006089 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009636 GO:0009987 GO:0016491 GO:0016614 GO:0016898 GO:0016999 GO:0017000 GO:0017144 GO:0019752 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0032787 GO:0042221 GO:0042742 GO:0042743 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050665 GO:0050896 GO:0051186 GO:0051188 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0070013 GO:0070887 GO:0071704 GO:0072593 GO:0097237 GO:0098542 GO:0098754 GO:1901615 GO:1903409 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

129

Amino Acids

14.84

Weight (kDa)

10.05

Isoelectric Point (pI)

41.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BURP	PF03181	71 - 127	1.1e-09	BURP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	295
AclWI	GGATC	1 cut(s)	307
AcsI	RAATTY	2 cut(s)	268, 342
AgsI	TTSAA	1 cut(s)	364
AleI	CACNNNNGTG	1 cut(s)	104
AluBI	AGCT	2 cut(s)	73, 263
AluI	AGCT	2 cut(s)	73, 263
Alw26I	GTCTC	1 cut(s)	183
AlwI	GGATC	1 cut(s)	307
ApoI	RAATTY	2 cut(s)	268, 342
AseI	ATTAAT	1 cut(s)	207
BbsI	GAAGAC	1 cut(s)	125
BccI	CCATC	2 cut(s)	52, 177
BcoDI	GTCTC	1 cut(s)	183
BfaI	CTAG	1 cut(s)	276
BfmI	CTRYAG	1 cut(s)	303
BlpI	GCTNAGC	1 cut(s)	259
BoxI	GACNNNNGTC	1 cut(s)	195
BpiI	GAAGAC	1 cut(s)	125
Bpu1102I	GCTNAGC	1 cut(s)	259
BsaJI	CCNNGG	1 cut(s)	113
Bse1I	ACTGG	1 cut(s)	108
BseDI	CCNNGG	1 cut(s)	113
BseGI	GGATG	1 cut(s)	44
BseMII	CTCAG	1 cut(s)	90
BseNI	ACTGG	1 cut(s)	108
BsiSI	CCGG	1 cut(s)	52
BslFI	GGGAC	1 cut(s)	277
BsmAI	GTCTC	1 cut(s)	183
BsmFI	GGGAC	1 cut(s)	277
BsmI	GAATGC	1 cut(s)	232
Bsp143I	GATC	1 cut(s)	312
Bsp1720I	GCTNAGC	1 cut(s)	259
BspACI	CCGC	1 cut(s)	295
BspCNI	CTCAG	1 cut(s)	89
BspMAI	CTGCAG	1 cut(s)	307
BspPI	GGATC	1 cut(s)	307
BsrI	ACTGG	1 cut(s)	108
BssECI	CCNNGG	1 cut(s)	113
BssMI	GATC	1 cut(s)	312
BssT1I	CCWWGG	1 cut(s)	113
Bst6I	CTCTTC	1 cut(s)	328
BstDEI	CTNAG	2 cut(s)	76, 259
BstF5I	GGATG	1 cut(s)	44
BstKTI	GATC	1 cut(s)	315
BstMAI	GTCTC	1 cut(s)	183
BstMBI	GATC	1 cut(s)	312
BstNSI	RCATGY	1 cut(s)	232
BstPAI	GACNNNNGTC	1 cut(s)	195
BstSFI	CTRYAG	1 cut(s)	303
BstV2I	GAAGAC	1 cut(s)	125
BtsCI	GGATG	1 cut(s)	44
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	3 cut(s)	30, 84, 101
CviAII	CATG	1 cut(s)	229
CviJI	RGCY	5 cut(s)	73, 136, 263, 281, 372
CviKI_1	RGCY	5 cut(s)	73, 136, 263, 281, 372
DdeI	CTNAG	2 cut(s)	76, 259
DpnI	GATC	1 cut(s)	314
DpnII	GATC	1 cut(s)	312
Eam1104I	CTCTTC	1 cut(s)	328
EarI	CTCTTC	1 cut(s)	328
Eco130I	CCWWGG	1 cut(s)	113
EcoT14I	CCWWGG	1 cut(s)	113
EcoT22I	ATGCAT	1 cut(s)	234
ErhI	CCWWGG	1 cut(s)	113
FaeI	CATG	1 cut(s)	232
FaiI	YATR	3 cut(s)	145, 230, 377
FalI	AAGNNNNNCTT	2 cut(s)	106, 138
FaqI	GGGAC	1 cut(s)	277
FatI	CATG	1 cut(s)	228
FauI	CCCGC	1 cut(s)	302
FokI	GGATG	1 cut(s)	31
FspBI	CTAG	1 cut(s)	276
HapII	CCGG	1 cut(s)	52
Hin1II	CATG	1 cut(s)	232
HinfI	GANTC	1 cut(s)	308
HpaII	CCGG	1 cut(s)	52
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188III	TCNNGA	1 cut(s)	237
Hpy8I	GTNNAC	1 cut(s)	82
HpyAV	CCTTC	2 cut(s)	217, 328
HpyCH4V	TGCA	3 cut(s)	232, 245, 305
HpyF3I	CTNAG	2 cut(s)	76, 259
Hsp92II	CATG	1 cut(s)	232
Kzo9I	GATC	1 cut(s)	312
MaeI	CTAG	1 cut(s)	276
MalI	GATC	1 cut(s)	314
MboI	GATC	1 cut(s)	312
MboII	GAAGA	3 cut(s)	130, 205, 315
MluCI	AATT	6 cut(s)	176, 204, 208, 268, 342, 353
MlyI	GAGTC	1 cut(s)	317
MnlI	CCTC	1 cut(s)	32
Mph1103I	ATGCAT	1 cut(s)	234
MseI	TTAA	1 cut(s)	207
MslI	CAYNNNNRTG	2 cut(s)	61, 104
MspI	CCGG	1 cut(s)	52
Mva1269I	GAATGC	1 cut(s)	232
NdeII	GATC	1 cut(s)	312
NlaIII	CATG	1 cut(s)	232
NsiI	ATGCAT	1 cut(s)	234
NspI	RCATGY	1 cut(s)	232
OliI	CACNNNNGTG	1 cut(s)	104
PctI	GAATGC	1 cut(s)	232
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
PshAI	GACNNNNGTC	1 cut(s)	195
PshBI	ATTAAT	1 cut(s)	207
PstI	CTGCAG	1 cut(s)	307
RseI	CAYNNNNRTG	2 cut(s)	61, 104
SaqAI	TTAA	1 cut(s)	207
Sau3AI	GATC	1 cut(s)	312
SchI	GAGTC	1 cut(s)	317
SetI	ASST	3 cut(s)	24, 75, 265
SfcI	CTRYAG	1 cut(s)	303
SmiMI	CAYNNNNRTG	2 cut(s)	61, 104
Sse9I	AATT	6 cut(s)	176, 204, 208, 268, 342, 353
SsiI	CCGC	1 cut(s)	295
SspMI	CTAG	1 cut(s)	276
StyI	CCWWGG	1 cut(s)	113
TaqI	TCGA	2 cut(s)	272, 311
TasI	AATT	6 cut(s)	176, 204, 208, 268, 342, 353
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	3 cut(s)	37, 84, 108
TspDTI	ATGAA	1 cut(s)	348
TspRI	CASTG	3 cut(s)	37, 84, 108
VspI	ATTAAT	1 cut(s)	207
XapI	RAATTY	2 cut(s)	268, 342
XceI	RCATGY	1 cut(s)	232
XspI	CTAG	1 cut(s)	276
Zsp2I	ATGCAT	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.