pycom15g09110

DNA polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Reverse (-)
5880558 .. 5880830
273 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 273 bp
ATGCGAACTCTTCAATCTGTGATGAAGGAAGCTGCTATCACTGAGGTACGTGAAGCTTTCAAACTGGGCAGAGGTATGGTGCAGGCCTTACAAGAGAATGCTGGAAGGTTTGCGTCTATGGTAACCATGTTTTGTGAGAGGCTTGGATGGCATGATTTCGAGGGCTTGGTTTGCAAGTTCCAAAATCGTGTTTCATTTGGAGTGAGAGCAGAGATTGTAGAGCTTACTACAATTCCATATATCAAGGTATGTGAACTACAGTTACATTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000018 GO:0000724 GO:0000725 GO:0000726 GO:0002200 GO:0002376 GO:0002377 GO:0002440 GO:0002520 GO:0002566 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003684 GO:0003824 GO:0003887 GO:0004518 GO:0004527 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006282 GO:0006284 GO:0006302 GO:0006303 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008094 GO:0008150 GO:0008152 GO:0008409 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009653 GO:0009791 GO:0009888 GO:0009892 GO:0009933 GO:0009987 GO:0010468 GO:0010564 GO:0010569 GO:0010605 GO:0016043 GO:0016445 GO:0016446 GO:0016462 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016829 GO:0016835 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022607 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0042623 GO:0042802 GO:0043142 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045738 GO:0045910 GO:0045934 GO:0046483 GO:0048507 GO:0048519 GO:0048523 GO:0048532 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051239 GO:0051259 GO:0051260 GO:0051301 GO:0051575 GO:0051716 GO:0051726 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0071897 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0090305 GO:0097159 GO:0097681 GO:0140097 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901987 GO:1902749 GO:1990067 GO:2000011 GO:2000026 GO:2000042 GO:2000779 GO:2000780 GO:2001020 GO:2001021
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DEAD DNA_pol_A Helicase_C

Protein Analysis

91

Amino Acids

10.28

Weight (kDa)

7.75

Isoelectric Point (pI)

26.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
POLQ_helical PF21099 4 - 64 2.7e-19 DNA_pol_Q helicase like region helical domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 48
AgsI TTSAA 2 cut(s) 14, 61
AluBI AGCT 3 cut(s) 32, 56, 223
AluI AGCT 3 cut(s) 32, 56, 223
AoxI GGCC 1 cut(s) 84
ApeKI GCWGC 1 cut(s) 32
BbvI GCAGC 1 cut(s) 19
BccI CCATC 1 cut(s) 141
BfmI CTRYAG 1 cut(s) 257
BisI GCNGC 1 cut(s) 33
BlsI GCNGC 1 cut(s) 34
BmrI ACTGGG 1 cut(s) 74
BmuI ACTGGG 1 cut(s) 74
BsaAI YACGTR 1 cut(s) 50
Bse1I ACTGG 1 cut(s) 69
BseGI GGATG 1 cut(s) 152
BseMII CTCAG 1 cut(s) 33
BseNI ACTGG 1 cut(s) 69
BseXI GCAGC 1 cut(s) 19
BsgI GTGCAG 1 cut(s) 101
BshFI GGCC 1 cut(s) 86
BsmI GAATGC 1 cut(s) 103
BsnI GGCC 1 cut(s) 86
BspANI GGCC 1 cut(s) 86
BspCNI CTCAG 1 cut(s) 34
BsrI ACTGG 1 cut(s) 69
Bst4CI ACNGT 1 cut(s) 261
Bst6I CTCTTC 1 cut(s) 15
BstBAI YACGTR 1 cut(s) 50
BstC8I GCNNGC 1 cut(s) 84
BstDEI CTNAG 1 cut(s) 42
BstEII GGTNACC 1 cut(s) 121
BstF5I GGATG 1 cut(s) 152
BstMWI GCNNNNNNNGC 2 cut(s) 148, 171
BstPI GGTNACC 1 cut(s) 121
BstSFI CTRYAG 1 cut(s) 257
BstV1I GCAGC 1 cut(s) 19
BsuRI GGCC 1 cut(s) 86
BtsCI GGATG 1 cut(s) 152
BtsIMutI CAGTG 1 cut(s) 39
Cac8I GCNNGC 1 cut(s) 84
CseI GACGC 1 cut(s) 102
Csp6I GTAC 1 cut(s) 47
CviAII CATG 2 cut(s) 127, 152
CviJI RGCY 6 cut(s) 32, 56, 86, 142, 165, 223
CviKI_1 RGCY 6 cut(s) 32, 56, 86, 142, 165, 223
CviQI GTAC 1 cut(s) 47
DdeI CTNAG 1 cut(s) 42
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
Eco147I AGGCCT 1 cut(s) 86
Eco91I GGTNACC 1 cut(s) 121
EcoO65I GGTNACC 1 cut(s) 121
FaeI CATG 2 cut(s) 130, 155
FaiI YATR 7 cut(s) 77, 119, 128, 153, 238, 240, 250
FatI CATG 2 cut(s) 126, 151
Fnu4HI GCNGC 1 cut(s) 33
FokI GGATG 1 cut(s) 159
Fsp4HI GCNGC 1 cut(s) 33
GluI GCNGC 1 cut(s) 33
HaeIII GGCC 1 cut(s) 86
HgaI GACGC 1 cut(s) 102
Hin1II CATG 2 cut(s) 130, 155
HindIII AAGCTT 1 cut(s) 54
Hpy166II GTNNAC 1 cut(s) 254
Hpy8I GTNNAC 1 cut(s) 254
HpyAV CCTTC 2 cut(s) 19, 99
HpyCH4III ACNGT 1 cut(s) 261
HpyCH4IV ACGT 1 cut(s) 49
HpyCH4V TGCA 2 cut(s) 82, 174
HpyF10VI GCNNNNNNNGC 2 cut(s) 148, 171
HpyF3I CTNAG 1 cut(s) 42
HpySE526I ACGT 1 cut(s) 49
Hsp92II CATG 2 cut(s) 130, 155
LpnPI CCDG 3 cut(s) 50, 68, 87
Lsp1109I GCAGC 1 cut(s) 19
MaeII ACGT 1 cut(s) 49
MaeIII GTNAC 2 cut(s) 121, 261
MluCI AATT 1 cut(s) 231
MnlI CCTC 4 cut(s) 37, 65, 132, 154
Mva1269I GAATGC 1 cut(s) 103
MwoI GCNNNNNNNGC 2 cut(s) 148, 171
NlaIII CATG 2 cut(s) 130, 155
PceI AGGCCT 1 cut(s) 86
PctI GAATGC 1 cut(s) 103
PkrI GCNGC 1 cut(s) 34
Ppu21I YACGTR 1 cut(s) 50
PspEI GGTNACC 1 cut(s) 121
PsrI GAACNNNNNNTAC 1 cut(s) 246
RsaI GTAC 1 cut(s) 48
RsaNI GTAC 1 cut(s) 47
SatI GCNGC 1 cut(s) 33
SetI ASST 8 cut(s) 34, 48, 52, 58, 76, 110, 225, 249
SfcI CTRYAG 1 cut(s) 257
Sse9I AATT 1 cut(s) 231
SseBI AGGCCT 1 cut(s) 86
StuI AGGCCT 1 cut(s) 86
TaaI ACNGT 1 cut(s) 261
TaiI ACGT 1 cut(s) 52
TaqI TCGA 1 cut(s) 159
TasI AATT 1 cut(s) 231
TscAI CASTG 1 cut(s) 46
TseI GCWGC 1 cut(s) 32
TspDTI ATGAA 2 cut(s) 38, 183
TspRI CASTG 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.