pycom15g09250

Belongs to the syntaxin family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Reverse (-)
5983325 .. 5983940
616 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 210 bp
ATGCAGACTCTAAGGGACACCATCCATCAAGAGTATCGTGATGTTGTCGAGAGGCAAGTTTTTACAGTGATGGGCACGAGAGCTGATGAAGAGACAATTGAAAGATTAATCGAGACAAGAAACACTGAACAAATTTTCCAGAAGGCAATCCAAGAACAAGGGGGAGGCCAGATAATGGACCGCTCTGGCCAAAATTCAAGAGCCACATGA

Protein Analysis

70

Amino Acids

8.04

Weight (kDa)

5.02

Isoelectric Point (pI)

51.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Syntaxin PF00804 2 - 50 2e-12 Syntaxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 175
AccBSI CCGCTC 1 cut(s) 183
AciI CCGC 1 cut(s) 181
AcoI YGGCCR 1 cut(s) 187
AcsI RAATTY 2 cut(s) 132, 193
AfiI CCNNNNNNNGG 1 cut(s) 175
AgsI TTSAA 2 cut(s) 101, 198
AloI GAACNNNNNNTCC 2 cut(s) 120, 152
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
Alw26I GTCTC 2 cut(s) 86, 107
AoxI GGCC 2 cut(s) 166, 187
ApoI RAATTY 2 cut(s) 132, 193
AseI ATTAAT 1 cut(s) 107
AspS9I GGNCC 1 cut(s) 178
AvaII GGWCC 1 cut(s) 178
BaeGI GKGCMC 1 cut(s) 77
BalI TGGCCA 1 cut(s) 189
BauI CACGAG 1 cut(s) 76
BccI CCATC 3 cut(s) 29, 33, 64
BcoDI GTCTC 2 cut(s) 86, 107
Bme18I GGWCC 1 cut(s) 178
BmgT120I GGNCC 1 cut(s) 178
Bsc4I CCNNNNNNNGG 1 cut(s) 175
BseGI GGATG 1 cut(s) 21
BseLI CCNNNNNNNGG 1 cut(s) 175
BseSI GKGCMC 1 cut(s) 77
BshFI GGCC 2 cut(s) 168, 189
BslFI GGGAC 1 cut(s) 29
BslI CCNNNNNNNGG 1 cut(s) 175
BsmAI GTCTC 2 cut(s) 86, 107
BsmFI GGGAC 1 cut(s) 29
BsnI GGCC 2 cut(s) 168, 189
Bsp1286I GDGCHC 1 cut(s) 77
BspACI CCGC 1 cut(s) 181
BspANI GGCC 2 cut(s) 168, 189
BsrBI CCGCTC 1 cut(s) 183
BssSI CACGAG 1 cut(s) 76
Bst2BI CACGAG 1 cut(s) 76
Bst4CI ACNGT 1 cut(s) 67
Bst6I CTCTTC 1 cut(s) 84
BstDEI CTNAG 1 cut(s) 11
BstF5I GGATG 1 cut(s) 21
BstMAI GTCTC 2 cut(s) 86, 107
BstSLI GKGCMC 1 cut(s) 77
BsuRI GGCC 2 cut(s) 168, 189
BtsCI GGATG 1 cut(s) 21
BtsIMutI CAGTG 2 cut(s) 72, 123
Cfr13I GGNCC 1 cut(s) 178
CviAII CATG 1 cut(s) 207
CviJI RGCY 4 cut(s) 83, 168, 189, 203
CviKI_1 RGCY 4 cut(s) 83, 168, 189, 203
DdeI CTNAG 1 cut(s) 11
EaeI YGGCCR 1 cut(s) 187
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Eco47I GGWCC 1 cut(s) 178
FaeI CATG 1 cut(s) 210
FaiI YATR 1 cut(s) 208
FaqI GGGAC 1 cut(s) 29
FatI CATG 1 cut(s) 206
FokI GGATG 1 cut(s) 8
HaeIII GGCC 2 cut(s) 168, 189
Hin1II CATG 1 cut(s) 210
HinfI GANTC 1 cut(s) 7
Hpy188III TCNNGA 6 cut(s) 29, 38, 49, 112, 139, 198
HpyAV CCTTC 1 cut(s) 136
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 1 cut(s) 11
Hsp92II CATG 1 cut(s) 210
LpnPI CCDG 3 cut(s) 152, 171, 182
MbiI CCGCTC 1 cut(s) 183
MboII GAAGA 1 cut(s) 101
MfeI CAATTG 1 cut(s) 96
MhlI GDGCHC 1 cut(s) 77
MlsI TGGCCA 1 cut(s) 189
MluCI AATT 3 cut(s) 96, 132, 193
MluNI TGGCCA 1 cut(s) 189
MnlI CCTC 2 cut(s) 45, 158
Mox20I TGGCCA 1 cut(s) 189
MscI TGGCCA 1 cut(s) 189
MseI TTAA 1 cut(s) 107
Msp20I TGGCCA 1 cut(s) 189
MunI CAATTG 1 cut(s) 96
NlaIII CATG 1 cut(s) 210
PflMI CCANNNNNTGG 1 cut(s) 175
PshBI ATTAAT 1 cut(s) 107
PspPI GGNCC 1 cut(s) 178
SaqAI TTAA 1 cut(s) 107
Sau96I GGNCC 1 cut(s) 178
SduI GDGCHC 1 cut(s) 77
SetI ASST 1 cut(s) 85
SinI GGWCC 1 cut(s) 178
Sse9I AATT 3 cut(s) 96, 132, 193
SsiI CCGC 1 cut(s) 181
TaaI ACNGT 1 cut(s) 67
TaqI TCGA 2 cut(s) 48, 111
TasI AATT 3 cut(s) 96, 132, 193
Tru1I TTAA 1 cut(s) 107
Tru9I TTAA 1 cut(s) 107
TscAI CASTG 2 cut(s) 72, 130
TspDTI ATGAA 1 cut(s) 102
TspRI CASTG 2 cut(s) 72, 130
Van91I CCANNNNNTGG 1 cut(s) 175
VpaK11BI GGWCC 1 cut(s) 178
VspI ATTAAT 1 cut(s) 107
XapI RAATTY 2 cut(s) 132, 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.