Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

6112888 .. 6113334

Gene Structure 447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGCTCACCAAGTTTATGCTTTTGAAAAGCGAGTATTTATATCGGTACAGCTGCGCAGGAGGACCGGTGATGGCCAGCATGAGGAAGATCGTGGATAAGGTGCAGAACTGTGAGGATTTATTGATGAATTTTGTGGTGGCTGATGAAGTTAATGCAGGGCCTATATTGGTAGGAGCCGAGAGGGTTAGGGGTTGGGGAGATGCACGCAATGATCAGGAAGATGGTGATGGTGATGCACGAGGAGGATTGACTGGGGAGGTTGCACAGGTGGGTTTGAGCAGTAGGAAAACGAAGCATAGGACGAGGAGAGGGGAGTGTATAAGTGAGTTTCATAGGGTGTTGGGGAGAATGCCTTTGAGGTTCAGTTATGGGAAGGTAGTCAACTCTGTCAGTGAACAAGGGTTGTGTCAAAAAGGAGGGAAATTGGCGTTTTGTGACCAATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006029 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0015012 GO:0016020 GO:0016740 GO:0016757 GO:0019538 GO:0030166 GO:0030201 GO:0030307 GO:0034645 GO:0040008 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0045927 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0065007 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00534 ko01100 map00534 map01100

Pfam Domains

Protein Families

Glyco_transf_64

Protein Analysis

149

Amino Acids

16.32

Weight (kDa)

8.87

Isoelectric Point (pI)

28.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_64	PF09258	2 - 128	4.5e-26	Glycosyl transferase family 64 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	55
AcoI	YGGCCR	1 cut(s)	72
AcsI	RAATTY	1 cut(s)	127
AfaI	GTAC	1 cut(s)	47
AfiI	CCNNNNNNNGG	1 cut(s)	81
AgeI	ACCGGT	1 cut(s)	64
AgsI	TTSAA	1 cut(s)	25
AluBI	AGCT	1 cut(s)	51
AluI	AGCT	1 cut(s)	51
AoxI	GGCC	2 cut(s)	72, 158
ApeKI	GCWGC	1 cut(s)	51
ApoI	RAATTY	1 cut(s)	127
AsiGI	ACCGGT	1 cut(s)	64
AspLEI	GCGC	1 cut(s)	56
AspS9I	GGNCC	2 cut(s)	62, 158
AsuHPI	GGTGA	3 cut(s)	79, 236, 242
AvaII	GGWCC	1 cut(s)	62
BalI	TGGCCA	1 cut(s)	74
BauI	CACGAG	1 cut(s)	237
BbvI	GCAGC	1 cut(s)	38
BccI	CCATC	3 cut(s)	64, 215, 221
BclI	TGATCA	1 cut(s)	211
BisI	GCNGC	1 cut(s)	52
BlsI	GCNGC	1 cut(s)	53
Bme18I	GGWCC	1 cut(s)	62
BmgT120I	GGNCC	2 cut(s)	62, 158
BmiI	GGNNCC	1 cut(s)	175
BmrI	ACTGGG	1 cut(s)	261
BmsI	GCATC	2 cut(s)	190, 223
BmuI	ACTGGG	1 cut(s)	261
BsaWI	WCCGGW	1 cut(s)	64
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bsc4I	CCNNNNNNNGG	1 cut(s)	81
Bse118I	RCCGGY	1 cut(s)	64
Bse1I	ACTGG	1 cut(s)	256
Bse3DI	GCAATG	1 cut(s)	214
BseLI	CCNNNNNNNGG	1 cut(s)	81
BseMI	GCAATG	1 cut(s)	214
BseNI	ACTGG	1 cut(s)	256
BseRI	GAGGAG	2 cut(s)	255, 319
BseXI	GCAGC	1 cut(s)	38
BsgI	GTGCAG	1 cut(s)	122
BshFI	GGCC	2 cut(s)	74, 160
BshTI	ACCGGT	1 cut(s)	64
BsiSI	CCGG	1 cut(s)	65
BslI	CCNNNNNNNGG	1 cut(s)	81
BsmI	GAATGC	1 cut(s)	354
BsnI	GGCC	2 cut(s)	74, 160
Bsp143I	GATC	2 cut(s)	87, 211
BspANI	GGCC	2 cut(s)	74, 160
BspLI	GGNNCC	1 cut(s)	175
BsrDI	GCAATG	1 cut(s)	214
BsrFI	RCCGGY	1 cut(s)	64
BsrI	ACTGG	1 cut(s)	256
BssAI	RCCGGY	1 cut(s)	64
BssMI	GATC	2 cut(s)	87, 211
BssSI	CACGAG	1 cut(s)	237
Bst2BI	CACGAG	1 cut(s)	237
Bst4CI	ACNGT	1 cut(s)	110
BstC8I	GCNNGC	2 cut(s)	76, 205
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	2 cut(s)	90, 214
BstMBI	GATC	2 cut(s)	87, 211
BstV1I	GCAGC	1 cut(s)	38
BsuRI	GGCC	2 cut(s)	74, 160
BtsIMutI	CAGTG	1 cut(s)	397
Cac8I	GCNNGC	2 cut(s)	76, 205
CfoI	GCGC	1 cut(s)	56
Cfr10I	RCCGGY	1 cut(s)	64
Cfr13I	GGNCC	2 cut(s)	62, 158
Csp6I	GTAC	1 cut(s)	46
CspAI	ACCGGT	1 cut(s)	64
CviAII	CATG	1 cut(s)	79
CviJI	RGCY	5 cut(s)	51, 74, 140, 160, 176
CviKI_1	RGCY	5 cut(s)	51, 74, 140, 160, 176
CviQI	GTAC	1 cut(s)	46
DpnI	GATC	2 cut(s)	89, 213
DpnII	GATC	2 cut(s)	87, 211
EaeI	YGGCCR	1 cut(s)	72
Eco47I	GGWCC	1 cut(s)	62
EcoO109I	RGGNCCY	1 cut(s)	158
FaeI	CATG	1 cut(s)	82
FaiI	YATR	9 cut(s)	17, 40, 80, 164, 297, 320, 333, 369, 445
FatI	CATG	1 cut(s)	78
FbaI	TGATCA	1 cut(s)	211
Fnu4HI	GCNGC	1 cut(s)	52
Fsp4HI	GCNGC	1 cut(s)	52
FspI	TGCGCA	1 cut(s)	55
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	1 cut(s)	52
HaeIII	GGCC	2 cut(s)	74, 160
HapII	CCGG	1 cut(s)	65
HhaI	GCGC	1 cut(s)	56
Hin1II	CATG	1 cut(s)	82
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
HpaII	CCGG	1 cut(s)	65
HphI	GGTGA	3 cut(s)	79, 236, 242
Hpy166II	GTNNAC	2 cut(s)	382, 395
Hpy188III	TCNNGA	1 cut(s)	215
Hpy8I	GTNNAC	2 cut(s)	382, 395
HpyAV	CCTTC	1 cut(s)	367
HpyCH4III	ACNGT	1 cut(s)	110
HpyCH4V	TGCA	5 cut(s)	103, 155, 203, 236, 263
Hsp92II	CATG	1 cut(s)	82
HspAI	GCGC	1 cut(s)	54
Ksp22I	TGATCA	1 cut(s)	211
Kzo9I	GATC	2 cut(s)	87, 211
LmnI	GCTCC	1 cut(s)	173
LpnPI	CCDG	7 cut(s)	42, 78, 88, 141, 200, 237, 251
Lsp1109I	GCAGC	1 cut(s)	38
LweI	GCATC	2 cut(s)	190, 223
MaeIII	GTNAC	1 cut(s)	434
MalI	GATC	2 cut(s)	89, 213
MboI	GATC	2 cut(s)	87, 211
MboII	GAAGA	2 cut(s)	97, 230
MlsI	TGGCCA	1 cut(s)	74
MluCI	AATT	2 cut(s)	127, 422
MluNI	TGGCCA	1 cut(s)	74
Mox20I	TGGCCA	1 cut(s)	74
MscI	TGGCCA	1 cut(s)	74
MseI	TTAA	1 cut(s)	150
Msp20I	TGGCCA	1 cut(s)	74
MspA1I	CMGCKG	1 cut(s)	51
MspI	CCGG	1 cut(s)	65
Mva1269I	GAATGC	1 cut(s)	354
NdeII	GATC	2 cut(s)	87, 211
NlaIII	CATG	1 cut(s)	82
NlaIV	GGNNCC	1 cut(s)	175
NmeAIII	GCCGAG	1 cut(s)	202
NmuCI	GTSAC	1 cut(s)	434
NsbI	TGCGCA	1 cut(s)	55
PctI	GAATGC	1 cut(s)	354
PinAI	ACCGGT	1 cut(s)	64
PkrI	GCNGC	1 cut(s)	53
PspN4I	GGNNCC	1 cut(s)	175
PspPI	GGNCC	2 cut(s)	62, 158
PvuII	CAGCTG	1 cut(s)	51
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
SaqAI	TTAA	1 cut(s)	150
SatI	GCNGC	1 cut(s)	52
Sau3AI	GATC	2 cut(s)	87, 211
Sau96I	GGNCC	2 cut(s)	62, 158
SetI	ASST	6 cut(s)	53, 102, 261, 270, 362, 378
SfaNI	GCATC	2 cut(s)	190, 223
SinI	GGWCC	1 cut(s)	62
Sse9I	AATT	2 cut(s)	127, 422
TaaI	ACNGT	1 cut(s)	110
TasI	AATT	2 cut(s)	127, 422
Tru1I	TTAA	1 cut(s)	150
Tru9I	TTAA	1 cut(s)	150
TscAI	CASTG	1 cut(s)	397
TseFI	GTSAC	1 cut(s)	434
TseI	GCWGC	1 cut(s)	51
Tsp45I	GTSAC	1 cut(s)	434
TspDTI	ATGAA	3 cut(s)	140, 159, 320
TspRI	CASTG	1 cut(s)	397
VpaK11BI	GGWCC	1 cut(s)	62
XapI	RAATTY	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.