Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

6142776 .. 6144882

Gene Structure 2107 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGTCTGCCATAGCTGCTGCCCATGGATTAAGCATCAGTCCCAGAGATCTTGCTTTGCTCTGCCAAAAGGTGGAGAATCATATTGTTGGAGCACCATGCGGTGTGATGGACCAGATGACATCTGCATGTGGTGAAGCAAACAAGCTTCTTGCGATGGTGTGCCAGCCTGCTGAGGTTCTTGGACTTGTAGAAATTCCTAGCCATGTTCGCTTTTGGGGAATTGATTCAGGAATAAGACACAGAATAGGTGCCTTTATGGGTCGGAAGATGATAAAGTGCACAGCATCTATGATTTTGTCTCGATCATCATCAACTGCATATGGGACAATTGATGAGTTGGAGGATGATGATTGTGAACTACTAGAAGCTGAAGCTTCATTAAATTACTTGTGCAACCTGCCACCTCATAGATATGAGGCTCTTTATGTTAAGGTGCTTCCTGAAACTATACTTGGTGAAACTTTTCTTGAGAAGTATGATGATCACAACGATCCAGTTACAGTAATTGATCCAAATCGCAGCTACGTAGTGAGATCACCTGCTAGACATCCTATATATGAAAATTTCCGGGTTAAGACCTTCAAAGCACTGCTAACATCTGCAAATTCAGATGATCAGCTTACAGCTCTTGGAGAATTACTGTATCAGTGTCACTACAGCTATAGTGCTTGCGGACTTGGCTCCGATGGAACAAATCGGCTTGTACGGTTGGTACAAGAGATGCAATATGCTAAATCATCTAAATCCGATGATGGGACGTTGTATGGAGCCAAGATTACAGGTGGAGGTTCCGGTGGAACGGTTTGTGTTGTCGGAAGGAATTGTCTGCAGAGCAGCCAACAAATTTTGGAGATTCAGCAGAGGTACAAAGATGCAACAGGGTATCTGCCATTTATTTTCGAGGGCTCGTCGCCTGGTGCCGGCAAGTTCGGGTATCTAAGAATACGCCGCCGTGTCTCCGTCGATCCGAATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0005975 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009506 GO:0009702 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0030054 GO:0044237 GO:0044238 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0055044 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N GalKase_gal_bdg Glyco_trans_1_3

Protein Analysis

326

Amino Acids

35.6

Weight (kDa)

5.94

Isoelectric Point (pI)

44.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GHMP_kinases_N	PF00288	2 - 44	5.3e-06	GHMP kinases N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	547
Acc36I	ACCTGC	2 cut(s)	405, 547
AccB1I	GGYRCC	2 cut(s)	248, 917
AccB7I	CCANNNNNTGG	1 cut(s)	70
AciI	CCGC	3 cut(s)	99, 672, 949
AclWI	GGATC	3 cut(s)	485, 503, 959
AcsI	RAATTY	4 cut(s)	192, 562, 604, 843
AcuI	CTGAAG	1 cut(s)	390
AfaI	GTAC	3 cut(s)	705, 714, 866
AfiI	CCNNNNNNNGG	3 cut(s)	70, 753, 920
AgsI	TTSAA	1 cut(s)	583
AjnI	CCWGG	1 cut(s)	913
AjuI	GAANNNNNNNTTGG	2 cut(s)	435, 467
AluBI	AGCT	8 cut(s)	14, 145, 368, 374, 522, 619, 626, 660
AluI	AGCT	8 cut(s)	14, 145, 368, 374, 522, 619, 626, 660
Alw21I	GWGCWC	2 cut(s)	94, 281
Alw26I	GTCTC	2 cut(s)	303, 961
Alw44I	GTGCAC	1 cut(s)	277
AlwI	GGATC	3 cut(s)	485, 503, 959
ApaLI	GTGCAC	1 cut(s)	277
ApeKI	GCWGC	4 cut(s)	14, 17, 519, 834
ApoI	RAATTY	4 cut(s)	192, 562, 604, 843
Asp700I	GAANNNNTTC	2 cut(s)	223, 462
AspS9I	GGNCC	1 cut(s)	109
AsuC2I	CCSGG	1 cut(s)	569
AsuHPI	GGTGA	3 cut(s)	143, 467, 528
AvaII	GGWCC	1 cut(s)	109
BaeGI	GKGCMC	1 cut(s)	281
BanI	GGYRCC	2 cut(s)	248, 917
BanII	GRGCYC	1 cut(s)	908
Bbv12I	GWGCWC	2 cut(s)	94, 281
BbvCI	CCTCAGC	1 cut(s)	171
BbvI	GCAGC	3 cut(s)	4, 531, 846
BccI	CCATC	4 cut(s)	100, 148, 680, 746
BceAI	ACGGC	1 cut(s)	936
BciT130I	CCWGG	1 cut(s)	915
BclI	TGATCA	2 cut(s)	481, 613
BcnI	CCSGG	1 cut(s)	569
BcoDI	GTCTC	2 cut(s)	303, 961
BfaI	CTAG	3 cut(s)	198, 362, 543
BfmI	CTRYAG	3 cut(s)	655, 661, 827
BfuAI	ACCTGC	2 cut(s)	405, 547
BglII	AGATCT	1 cut(s)	46
BisI	GCNGC	5 cut(s)	15, 18, 520, 835, 949
BlsI	GCNGC	5 cut(s)	16, 19, 521, 836, 950
Bme1390I	CCNGG	2 cut(s)	569, 915
Bme18I	GGWCC	1 cut(s)	109
BmgT120I	GGNCC	1 cut(s)	109
BmiI	GGNNCC	5 cut(s)	250, 682, 769, 790, 919
BmrFI	CCNGG	2 cut(s)	569, 915
BmsI	GCATC	4 cut(s)	42, 293, 711, 862
Bpu10I	CCTNAGC	1 cut(s)	171
BpuEI	CTTGAG	1 cut(s)	488
BpuMI	CCSGG	1 cut(s)	569
BsaAI	YACGTR	1 cut(s)	526
BsaBI	GATNNNNATC	2 cut(s)	307, 513
BsaJI	CCNNGG	1 cut(s)	22
BsaWI	WCCGGW	1 cut(s)	791
Bsc4I	CCNNNNNNNGG	3 cut(s)	70, 753, 920
Bse118I	RCCGGY	1 cut(s)	920
Bse1I	ACTGG	1 cut(s)	494
Bse8I	GATNNNNATC	2 cut(s)	307, 513
BseBI	CCWGG	1 cut(s)	915
BseDI	CCNNGG	1 cut(s)	22
BseGI	GGATG	2 cut(s)	349, 547
BseJI	GATNNNNATC	2 cut(s)	307, 513
BseLI	CCNNNNNNNGG	3 cut(s)	70, 753, 920
BseMII	CTCAG	1 cut(s)	162
BseNI	ACTGG	1 cut(s)	494
BseSI	GKGCMC	1 cut(s)	281
BseXI	GCAGC	3 cut(s)	4, 531, 846
BshNI	GGYRCC	2 cut(s)	248, 917
BsiHKAI	GWGCWC	2 cut(s)	94, 281
BsiSI	CCGG	3 cut(s)	568, 792, 921
BslFI	GGGAC	3 cut(s)	24, 337, 769
BslI	CCNNNNNNNGG	3 cut(s)	70, 753, 920
BsmAI	GTCTC	2 cut(s)	303, 961
BsmFI	GGGAC	3 cut(s)	24, 337, 769
Bsp1286I	GDGCHC	3 cut(s)	94, 281, 908
Bsp143I	GATC	8 cut(s)	46, 302, 481, 490, 508, 533, 613, 964
Bsp19I	CCATGG	1 cut(s)	22
BspACI	CCGC	3 cut(s)	99, 672, 949
BspCNI	CTCAG	1 cut(s)	163
BspLI	GGNNCC	5 cut(s)	250, 682, 769, 790, 919
BspMAI	CTGCAG	1 cut(s)	831
BspMI	ACCTGC	2 cut(s)	405, 547
BspPI	GGATC	3 cut(s)	485, 503, 959
BspT107I	GGYRCC	2 cut(s)	248, 917
BsrFI	RCCGGY	1 cut(s)	920
BsrI	ACTGG	1 cut(s)	494
BssAI	RCCGGY	1 cut(s)	920
BssECI	CCNNGG	1 cut(s)	22
BssMI	GATC	8 cut(s)	46, 302, 481, 490, 508, 533, 613, 964
BssT1I	CCWWGG	1 cut(s)	22
Bst2UI	CCWGG	1 cut(s)	915
Bst4CI	ACNGT	4 cut(s)	502, 642, 708, 802
BstBAI	YACGTR	1 cut(s)	526
BstC8I	GCNNGC	4 cut(s)	164, 168, 670, 922
BstDEI	CTNAG	2 cut(s)	171, 938
BstDSI	CCRYGG	1 cut(s)	22
BstF5I	GGATG	2 cut(s)	349, 547
BstKTI	GATC	8 cut(s)	49, 305, 484, 493, 511, 536, 616, 967
BstMAI	GTCTC	2 cut(s)	303, 961
BstMBI	GATC	8 cut(s)	46, 302, 481, 490, 508, 533, 613, 964
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 207, 678
BstNI	CCWGG	1 cut(s)	915
BstNSI	RCATGY	1 cut(s)	129
BstSCI	CCNGG	2 cut(s)	567, 913
BstSFI	CTRYAG	3 cut(s)	655, 661, 827
BstSLI	GKGCMC	1 cut(s)	281
BstSNI	TACGTA	1 cut(s)	526
BstV1I	GCAGC	3 cut(s)	4, 531, 846
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
BtgI	CCRYGG	1 cut(s)	22
BtgZI	GCGATG	1 cut(s)	167
BtsCI	GGATG	2 cut(s)	349, 547
BtsI	GCAGTG	1 cut(s)	587
BtsIMutI	CAGTG	2 cut(s)	587, 653
BveI	ACCTGC	2 cut(s)	405, 547
Cac8I	GCNNGC	4 cut(s)	164, 168, 670, 922
Cfr10I	RCCGGY	1 cut(s)	920
Cfr13I	GGNCC	1 cut(s)	109
Csp6I	GTAC	3 cut(s)	704, 713, 865
CviAII	CATG	4 cut(s)	23, 96, 126, 203
CviQI	GTAC	3 cut(s)	704, 713, 865
DdeI	CTNAG	2 cut(s)	171, 938
DpnI	GATC	8 cut(s)	48, 304, 483, 492, 510, 535, 615, 966
DpnII	GATC	8 cut(s)	46, 302, 481, 490, 508, 533, 613, 964
Eco105I	TACGTA	1 cut(s)	526
Eco130I	CCWWGG	1 cut(s)	22
Eco24I	GRGCYC	1 cut(s)	908
Eco47I	GGWCC	1 cut(s)	109
Eco57I	CTGAAG	1 cut(s)	390
EcoRII	CCWGG	1 cut(s)	913
EcoT14I	CCWWGG	1 cut(s)	22
EcoT38I	GRGCYC	1 cut(s)	908
ErhI	CCWWGG	1 cut(s)	22
FaeI	CATG	4 cut(s)	26, 99, 129, 206
FaqI	GGGAC	3 cut(s)	24, 337, 769
FatI	CATG	4 cut(s)	22, 95, 125, 202
FauNDI	CATATG	1 cut(s)	319
FbaI	TGATCA	2 cut(s)	481, 613
Fnu4HI	GCNGC	5 cut(s)	15, 18, 520, 835, 949
FokI	GGATG	2 cut(s)	356, 534
FriOI	GRGCYC	1 cut(s)	908
Fsp4HI	GCNGC	5 cut(s)	15, 18, 520, 835, 949
FspBI	CTAG	3 cut(s)	198, 362, 543
GluI	GCNGC	5 cut(s)	15, 18, 520, 835, 949
HapII	CCGG	3 cut(s)	568, 792, 921
Hin1II	CATG	4 cut(s)	26, 99, 129, 206
HindIII	AAGCTT	2 cut(s)	143, 372
HinfI	GANTC	3 cut(s)	76, 224, 853
HpaII	CCGG	3 cut(s)	568, 792, 921
HphI	GGTGA	3 cut(s)	143, 467, 528
Hpy166II	GTNNAC	2 cut(s)	279, 356
Hpy188I	TCNGA	6 cut(s)	264, 610, 685, 748, 815, 969
Hpy188III	TCNNGA	4 cut(s)	228, 300, 440, 467
Hpy8I	GTNNAC	2 cut(s)	279, 356
Hpy99I	CGWCG	2 cut(s)	913, 965
HpyAV	CCTTC	2 cut(s)	589, 810
HpyCH4III	ACNGT	4 cut(s)	502, 642, 708, 802
HpyCH4IV	ACGT	2 cut(s)	525, 758
HpyCH4V	TGCA	8 cut(s)	125, 279, 317, 393, 602, 724, 829, 875
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 207, 678
HpyF3I	CTNAG	2 cut(s)	171, 938
HpySE526I	ACGT	2 cut(s)	525, 758
Hsp92II	CATG	4 cut(s)	26, 99, 129, 206
KroI	GCCGGC	1 cut(s)	920
KroNI	GCCGGC	1 cut(s)	922
Ksp22I	TGATCA	2 cut(s)	481, 613
Kzo9I	GATC	8 cut(s)	46, 302, 481, 490, 508, 533, 613, 964
LmnI	GCTCC	3 cut(s)	89, 686, 767
Lsp1109I	GCAGC	3 cut(s)	4, 531, 846
LweI	GCATC	4 cut(s)	42, 293, 711, 862
MaeI	CTAG	3 cut(s)	198, 362, 543
MaeII	ACGT	2 cut(s)	525, 758
MaeIII	GTNAC	2 cut(s)	496, 650
MalI	GATC	8 cut(s)	48, 304, 483, 492, 510, 535, 615, 966
MboI	GATC	8 cut(s)	46, 302, 481, 490, 508, 533, 613, 964
MboII	GAAGA	1 cut(s)	277
MfeI	CAATTG	1 cut(s)	327
MflI	RGATCY	1 cut(s)	46
MhlI	GDGCHC	3 cut(s)	94, 281, 908
MmeI	TCCRAC	4 cut(s)	67, 242, 318, 793
MnlI	CCTC	7 cut(s)	166, 334, 409, 414, 779, 855, 895
MroNI	GCCGGC	1 cut(s)	920
MroXI	GAANNNNTTC	2 cut(s)	223, 462
MseI	TTAA	4 cut(s)	29, 380, 429, 573
MslI	CAYNNNNRTG	2 cut(s)	124, 411
MspI	CCGG	3 cut(s)	568, 792, 921
MspR9I	CCNGG	2 cut(s)	569, 915
MunI	CAATTG	1 cut(s)	327
MvaI	CCWGG	1 cut(s)	915
MwoI	GCNNNNNNNGC	3 cut(s)	14, 207, 678
NaeI	GCCGGC	1 cut(s)	922
NciI	CCSGG	1 cut(s)	569
NcoI	CCATGG	1 cut(s)	22
NdeI	CATATG	1 cut(s)	319
NdeII	GATC	8 cut(s)	46, 302, 481, 490, 508, 533, 613, 964
NgoMIV	GCCGGC	1 cut(s)	920
NlaIII	CATG	4 cut(s)	26, 99, 129, 206
NlaIV	GGNNCC	5 cut(s)	250, 682, 769, 790, 919
NmuCI	GTSAC	1 cut(s)	650
NspI	RCATGY	1 cut(s)	129
PaqCI	CACCTGC	1 cut(s)	547
PdiI	GCCGGC	1 cut(s)	922
PdmI	GAANNNNTTC	2 cut(s)	223, 462
PfeI	GAWTC	3 cut(s)	76, 224, 853
PflMI	CCANNNNNTGG	1 cut(s)	70
PkrI	GCNGC	5 cut(s)	16, 19, 521, 836, 950
Ppu21I	YACGTR	1 cut(s)	526
Psp6I	CCWGG	1 cut(s)	913
PspGI	CCWGG	1 cut(s)	913
PspN4I	GGNNCC	5 cut(s)	250, 682, 769, 790, 919
PspPI	GGNCC	1 cut(s)	109
PstI	CTGCAG	1 cut(s)	831
PsuI	RGATCY	1 cut(s)	46
RsaI	GTAC	3 cut(s)	705, 714, 866
RsaNI	GTAC	3 cut(s)	704, 713, 865
RseI	CAYNNNNRTG	2 cut(s)	124, 411
SaqAI	TTAA	4 cut(s)	29, 380, 429, 573
SatI	GCNGC	5 cut(s)	15, 18, 520, 835, 949
Sau3AI	GATC	8 cut(s)	46, 302, 481, 490, 508, 533, 613, 964
Sau96I	GGNCC	1 cut(s)	109
ScrFI	CCNGG	2 cut(s)	569, 915
SduI	GDGCHC	3 cut(s)	94, 281, 908
SfaNI	GCATC	4 cut(s)	42, 293, 711, 862
SfcI	CTRYAG	3 cut(s)	655, 661, 827
SinI	GGWCC	1 cut(s)	109
SmiMI	CAYNNNNRTG	2 cut(s)	124, 411
SmlI	CTYRAG	1 cut(s)	467
SmoI	CTYRAG	1 cut(s)	467
SnaBI	TACGTA	1 cut(s)	526
SsiI	CCGC	3 cut(s)	99, 672, 949
SspMI	CTAG	3 cut(s)	198, 362, 543
StyD4I	CCNGG	2 cut(s)	567, 913
StyI	CCWWGG	1 cut(s)	22
TaaI	ACNGT	4 cut(s)	502, 642, 708, 802
TaiI	ACGT	2 cut(s)	528, 761
TaqI	TCGA	3 cut(s)	301, 900, 963
TauI	GCSGC	1 cut(s)	951
TfiI	GAWTC	3 cut(s)	76, 224, 853
Tru1I	TTAA	4 cut(s)	29, 380, 429, 573
Tru9I	TTAA	4 cut(s)	29, 380, 429, 573
TscAI	CASTG	2 cut(s)	594, 653
TseFI	GTSAC	1 cut(s)	650
TseI	GCWGC	4 cut(s)	14, 17, 519, 834
Tsp45I	GTSAC	1 cut(s)	650
TspDTI	ATGAA	2 cut(s)	366, 573
TspGWI	ACGGA	1 cut(s)	949
TspRI	CASTG	2 cut(s)	594, 653
Van91I	CCANNNNNTGG	1 cut(s)	70
VneI	GTGCAC	1 cut(s)	277
VpaK11BI	GGWCC	1 cut(s)	109
XapI	RAATTY	4 cut(s)	192, 562, 604, 843
XceI	RCATGY	1 cut(s)	129
XmnI	GAANNNNTTC	2 cut(s)	223, 462
XspI	CTAG	3 cut(s)	198, 362, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.