pycom15g09460

DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Reverse (-)
6180113 .. 6181236
1124 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g09460.4

Sequence Viewer

Length: 528 bp
ATGGACAGCGTTAAGTCTCCCCTTTCTACACCGCCGGGCAGGTTAGATTCTCCCGACCTCGCATTATCTCTCATGTCCAGCGCTAAGTCTCCCCTTTCTACGCTGTCGGGCAAGTTAGATTCTCCCGAGCTCGCATTATCTCTTATGTCCAGCGCGCCGCCGAGCAAATTAGATTCTCCCGAGCTCGCATTATCTCTTATGTCCAGCGCTAAGTCTCCCATTTCTACGCCGCCGGGCAAGTTAGATTCTCCCAAGCTCGCATTATCTCCTATGTCCAGCACTAAGTCTCCCCTTTCTACTACGCCCAGGTCCCGGAGCTCGCAGTACCGGGGCGTTACGTTTTATCGAAGGACAGGGAGATGGGAATCCTATATTTGGGATTACGGGAAACAAGTGTACTTGGGAGGATTTGACACTGCCCATGCTGCTGCTAGGGCGTATGATCGAGATGATCGATCAAGTTCCGCGGAATTGAGGCTGATATTAATTTCAGTGTCAGTGATTATGAGGATGATATTAAGCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

176

Amino Acids

18.9

Weight (kDa)

9.81

Isoelectric Point (pI)

79.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 30
AccII CGCG 2 cut(s) 155, 467
AciI CCGC 5 cut(s) 32, 158, 230, 465, 467
AfaI GTAC 2 cut(s) 326, 398
AfeI AGCGCT 2 cut(s) 82, 208
AfiI CCNNNNNNNGG 2 cut(s) 312, 375
AjnI CCWGG 1 cut(s) 305
AluBI AGCT 4 cut(s) 130, 184, 256, 318
AluI AGCT 4 cut(s) 130, 184, 256, 318
Alw21I GWGCWC 3 cut(s) 132, 186, 320
Alw26I GTCTC 4 cut(s) 21, 93, 219, 291
Ama87I CYCGRG 2 cut(s) 125, 179
Aor51HI AGCGCT 2 cut(s) 82, 208
ApeKI GCWGC 2 cut(s) 425, 428
AseI ATTAAT 1 cut(s) 485
AspLEI GCGC 4 cut(s) 83, 155, 157, 209
AspS9I GGNCC 1 cut(s) 309
AsuC2I CCSGG 4 cut(s) 36, 234, 313, 329
AvaI CYCGRG 2 cut(s) 125, 179
AvaII GGWCC 1 cut(s) 309
BanII GRGCYC 3 cut(s) 132, 186, 320
Bbv12I GWGCWC 3 cut(s) 132, 186, 320
BbvI GCAGC 2 cut(s) 412, 415
BccI CCATC 1 cut(s) 354
BciT130I CCWGG 1 cut(s) 307
BcnI CCSGG 4 cut(s) 36, 234, 313, 329
BcoDI GTCTC 4 cut(s) 21, 93, 219, 291
BfaI CTAG 1 cut(s) 432
BfoI RGCGCY 2 cut(s) 84, 210
BfuAI ACCTGC 1 cut(s) 30
BisI GCNGC 4 cut(s) 158, 230, 426, 429
BlsI GCNGC 4 cut(s) 159, 231, 427, 430
Bme1390I CCNGG 5 cut(s) 36, 234, 307, 313, 329
Bme18I GGWCC 1 cut(s) 309
BmeT110I CYCGRG 2 cut(s) 125, 179
BmgT120I GGNCC 1 cut(s) 309
BmiI GGNNCC 1 cut(s) 311
BmrFI CCNGG 5 cut(s) 36, 234, 307, 313, 329
BpuMI CCSGG 4 cut(s) 36, 234, 313, 329
Bsa29I ATCGAT 1 cut(s) 454
BsaBI GATNNNNATC 1 cut(s) 364
BsaJI CCNNGG 3 cut(s) 305, 328, 465
BsaXI ACNNNNNCTCC 2 cut(s) 271, 301
Bsc4I CCNNNNNNNGG 2 cut(s) 312, 375
Bse8I GATNNNNATC 1 cut(s) 364
BseBI CCWGG 1 cut(s) 307
BseCI ATCGAT 1 cut(s) 454
BseDI CCNNGG 3 cut(s) 305, 328, 465
BseGI GGATG 1 cut(s) 516
BseJI GATNNNNATC 1 cut(s) 364
BseLI CCNNNNNNNGG 2 cut(s) 312, 375
BsePI GCGCGC 1 cut(s) 153
BseXI GCAGC 2 cut(s) 412, 415
Bsh1236I CGCG 2 cut(s) 155, 467
BshVI ATCGAT 1 cut(s) 454
BsiHKAI GWGCWC 3 cut(s) 132, 186, 320
BsiHKCI CYCGRG 2 cut(s) 125, 179
BsiSI CCGG 4 cut(s) 35, 233, 313, 328
BslFI GGGAC 1 cut(s) 295
BslI CCNNNNNNNGG 2 cut(s) 312, 375
BsmAI GTCTC 4 cut(s) 21, 93, 219, 291
BsmFI GGGAC 1 cut(s) 295
BsoBI CYCGRG 2 cut(s) 125, 179
Bsp1286I GDGCHC 3 cut(s) 132, 186, 320
Bsp143I GATC 3 cut(s) 442, 451, 455
BspACI CCGC 5 cut(s) 32, 158, 230, 465, 467
BspDI ATCGAT 1 cut(s) 454
BspFNI CGCG 2 cut(s) 155, 467
BspLI GGNNCC 1 cut(s) 311
BspMI ACCTGC 1 cut(s) 30
BssECI CCNNGG 3 cut(s) 305, 328, 465
BssHII GCGCGC 1 cut(s) 153
BssMI GATC 3 cut(s) 442, 451, 455
Bst2UI CCWGG 1 cut(s) 307
BstC8I GCNNGC 5 cut(s) 132, 155, 186, 258, 320
BstDEI CTNAG 3 cut(s) 84, 210, 282
BstDSI CCRYGG 1 cut(s) 465
BstF5I GGATG 1 cut(s) 516
BstFNI CGCG 2 cut(s) 155, 467
BstH2I RGCGCY 2 cut(s) 84, 210
BstHHI GCGC 4 cut(s) 83, 155, 157, 209
BstKTI GATC 3 cut(s) 445, 454, 458
BstMAI GTCTC 4 cut(s) 21, 93, 219, 291
BstMBI GATC 3 cut(s) 442, 451, 455
BstMWI GCNNNNNNNGC 2 cut(s) 425, 434
BstNI CCWGG 1 cut(s) 307
BstSCI CCNGG 5 cut(s) 34, 232, 305, 311, 327
BstUI CGCG 2 cut(s) 155, 467
BstV1I GCAGC 2 cut(s) 412, 415
Bsu15I ATCGAT 1 cut(s) 454
BsuTUI ATCGAT 1 cut(s) 454
BtgI CCRYGG 1 cut(s) 465
BtsCI GGATG 1 cut(s) 516
BtsI GCAGTG 1 cut(s) 414
BtsIMutI CAGTG 3 cut(s) 414, 498, 504
BveI ACCTGC 1 cut(s) 30
Cac8I GCNNGC 5 cut(s) 132, 155, 186, 258, 320
CfoI GCGC 4 cut(s) 83, 155, 157, 209
Cfr13I GGNCC 1 cut(s) 309
Cfr42I CCGCGG 1 cut(s) 468
ClaI ATCGAT 1 cut(s) 454
Csp6I GTAC 2 cut(s) 325, 397
CviAII CATG 2 cut(s) 73, 422
CviJI RGCY 5 cut(s) 130, 184, 256, 318, 478
CviKI_1 RGCY 5 cut(s) 130, 184, 256, 318, 478
CviQI GTAC 2 cut(s) 325, 397
DdeI CTNAG 3 cut(s) 84, 210, 282
DpnI GATC 3 cut(s) 444, 453, 457
DpnII GATC 3 cut(s) 442, 451, 455
Ecl136II GAGCTC 3 cut(s) 130, 184, 318
Eco24I GRGCYC 3 cut(s) 132, 186, 320
Eco47I GGWCC 1 cut(s) 309
Eco47III AGCGCT 2 cut(s) 82, 208
Eco53kI GAGCTC 3 cut(s) 130, 184, 318
Eco88I CYCGRG 2 cut(s) 125, 179
EcoICRI GAGCTC 3 cut(s) 130, 184, 318
EcoO109I RGGNCCY 1 cut(s) 309
EcoRII CCWGG 1 cut(s) 305
EcoT38I GRGCYC 3 cut(s) 132, 186, 320
FaeI CATG 2 cut(s) 76, 425
FaiI YATR 8 cut(s) 74, 146, 200, 272, 372, 423, 441, 506
FaqI GGGAC 1 cut(s) 295
FatI CATG 2 cut(s) 72, 421
Fnu4HI GCNGC 4 cut(s) 158, 230, 426, 429
FokI GGATG 1 cut(s) 523
FriOI GRGCYC 3 cut(s) 132, 186, 320
Fsp4HI GCNGC 4 cut(s) 158, 230, 426, 429
FspBI CTAG 1 cut(s) 432
GlaI GCGC 4 cut(s) 82, 154, 156, 208
GluI GCNGC 4 cut(s) 158, 230, 426, 429
HaeII RGCGCY 2 cut(s) 84, 210
HapII CCGG 4 cut(s) 35, 233, 313, 328
HhaI GCGC 4 cut(s) 83, 155, 157, 209
Hin1II CATG 2 cut(s) 76, 425
Hin6I GCGC 4 cut(s) 81, 153, 155, 207
HinP1I GCGC 4 cut(s) 81, 153, 155, 207
HinfI GANTC 5 cut(s) 47, 119, 173, 245, 365
HpaII CCGG 4 cut(s) 35, 233, 313, 328
Hpy166II GTNNAC 1 cut(s) 397
Hpy188III TCNNGA 4 cut(s) 53, 125, 179, 446
Hpy8I GTNNAC 1 cut(s) 397
HpyAV CCTTC 1 cut(s) 342
HpyCH4IV ACGT 1 cut(s) 338
HpyF10VI GCNNNNNNNGC 2 cut(s) 425, 434
HpyF3I CTNAG 3 cut(s) 84, 210, 282
HpySE526I ACGT 1 cut(s) 338
Hsp92II CATG 2 cut(s) 76, 425
HspAI GCGC 4 cut(s) 81, 153, 155, 207
KspI CCGCGG 1 cut(s) 468
Kzo9I GATC 3 cut(s) 442, 451, 455
LmnI GCTCC 1 cut(s) 315
Lsp1109I GCAGC 2 cut(s) 412, 415
MaeI CTAG 1 cut(s) 432
MaeII ACGT 1 cut(s) 338
MaeIII GTNAC 1 cut(s) 334
MalI GATC 3 cut(s) 444, 453, 457
MboI GATC 3 cut(s) 442, 451, 455
MhlI GDGCHC 3 cut(s) 132, 186, 320
MluCI AATT 3 cut(s) 167, 470, 486
MnlI CCTC 4 cut(s) 68, 398, 468, 501
MseI TTAA 3 cut(s) 12, 485, 518
MspA1I CMGCKG 1 cut(s) 467
MspI CCGG 4 cut(s) 35, 233, 313, 328
MspR9I CCNGG 5 cut(s) 36, 234, 307, 313, 329
MvaI CCWGG 1 cut(s) 307
MvnI CGCG 2 cut(s) 155, 467
MwoI GCNNNNNNNGC 2 cut(s) 425, 434
NciI CCSGG 4 cut(s) 36, 234, 313, 329
NdeII GATC 3 cut(s) 442, 451, 455
NlaIII CATG 2 cut(s) 76, 425
NlaIV GGNNCC 1 cut(s) 311
NmeAIII GCCGAG 1 cut(s) 186
PauI GCGCGC 1 cut(s) 153
PcsI WCGNNNNNNNCGW 1 cut(s) 451
PfeI GAWTC 5 cut(s) 47, 119, 173, 245, 365
PfoI TCCNGGA 1 cut(s) 311
PkrI GCNGC 4 cut(s) 159, 231, 427, 430
PpuMI RGGWCCY 1 cut(s) 309
PshBI ATTAAT 1 cut(s) 485
Psp124BI GAGCTC 3 cut(s) 132, 186, 320
Psp5II RGGWCCY 1 cut(s) 309
Psp6I CCWGG 1 cut(s) 305
PspGI CCWGG 1 cut(s) 305
PspN4I GGNNCC 1 cut(s) 311
PspPI GGNCC 1 cut(s) 309
PspPPI RGGWCCY 1 cut(s) 309
PteI GCGCGC 1 cut(s) 153
RsaI GTAC 2 cut(s) 326, 398
RsaNI GTAC 2 cut(s) 325, 397
SacI GAGCTC 3 cut(s) 132, 186, 320
SacII CCGCGG 1 cut(s) 468
SaqAI TTAA 3 cut(s) 12, 485, 518
SatI GCNGC 4 cut(s) 158, 230, 426, 429
Sau3AI GATC 3 cut(s) 442, 451, 455
Sau96I GGNCC 1 cut(s) 309
ScrFI CCNGG 5 cut(s) 36, 234, 307, 313, 329
SduI GDGCHC 3 cut(s) 132, 186, 320
SetI ASST 8 cut(s) 44, 60, 132, 186, 258, 311, 320, 341
Sfr303I CCGCGG 1 cut(s) 468
SgrBI CCGCGG 1 cut(s) 468
SinI GGWCC 1 cut(s) 309
Sse9I AATT 3 cut(s) 167, 470, 486
SsiI CCGC 5 cut(s) 32, 158, 230, 465, 467
SspMI CTAG 1 cut(s) 432
SstI GAGCTC 3 cut(s) 132, 186, 320
StyD4I CCNGG 5 cut(s) 34, 232, 305, 311, 327
TaiI ACGT 1 cut(s) 341
TaqI TCGA 3 cut(s) 346, 445, 454
TasI AATT 3 cut(s) 167, 470, 486
TatI WGTACW 1 cut(s) 396
TauI GCSGC 2 cut(s) 160, 232
TfiI GAWTC 5 cut(s) 47, 119, 173, 245, 365
Tru1I TTAA 3 cut(s) 12, 485, 518
Tru9I TTAA 3 cut(s) 12, 485, 518
TscAI CASTG 3 cut(s) 421, 498, 504
TseI GCWGC 2 cut(s) 425, 428
TspRI CASTG 3 cut(s) 421, 498, 504
VpaK11BI GGWCC 1 cut(s) 309
VspI ATTAAT 1 cut(s) 485
XspI CTAG 1 cut(s) 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.