pycom15g09580

Oligouridylate-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Reverse (-)
6241716 .. 6243023
1308 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 336 bp
ATGCAGCAAGCACTTCTTCAGCAGCAACAACAACACATGTACCATCCTGGCGTGCTCGCTGCTGCCATGTCTCAGATGGAGCCTATCCCAAGTGGAAATCTGCCTCCCGGATTTGACCCGTCTCAGTGCAACAGTGTCTATGTTGGAAATATTCATGTAAATGTCACCGATAAGCTTCTAGCTGAAGTCTTCCAGAGTGTTGGTCCTCTTGCAGGATGCAAGCTCATAAAAAAGGATAAGTCATCATATGGATTTGTTGACTACCATCGATCGACACTCTGCAGCCCATGCAATAACGAATCTGCATGGACGGCAACTTTATGGTCAGGCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

112

Amino Acids

12.11

Weight (kDa)

6.38

Isoelectric Point (pI)

50.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 46 - 90 2.6e-07 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 204
AfaI GTAC 1 cut(s) 41
AfiI CCNNNNNNNGG 1 cut(s) 212
AflIII ACRYGT 1 cut(s) 36
AjnI CCWGG 1 cut(s) 46
AluBI AGCT 3 cut(s) 175, 182, 223
AluI AGCT 3 cut(s) 175, 182, 223
Alw21I GWGCWC 1 cut(s) 57
Alw26I GTCTC 2 cut(s) 75, 126
ApeKI GCWGC 5 cut(s) 4, 22, 59, 62, 282
AspS9I GGNCC 1 cut(s) 203
AsuC2I CCSGG 1 cut(s) 108
AsuHPI GGTGA 1 cut(s) 157
AvaII GGWCC 1 cut(s) 203
BaeI ACNNNNGTAYC 2 cut(s) 23, 56
BbsI GAAGAC 1 cut(s) 181
Bbv12I GWGCWC 1 cut(s) 57
BbvI GCAGC 5 cut(s) 16, 34, 46, 49, 294
BccI CCATC 3 cut(s) 51, 70, 273
BceAI ACGGC 1 cut(s) 327
BciT130I CCWGG 1 cut(s) 48
BcnI CCSGG 1 cut(s) 108
BcoDI GTCTC 2 cut(s) 75, 126
BfaI CTAG 1 cut(s) 179
BfmI CTRYAG 1 cut(s) 280
BisI GCNGC 5 cut(s) 5, 23, 60, 63, 283
BlsI GCNGC 5 cut(s) 6, 24, 61, 64, 284
Bme1390I CCNGG 2 cut(s) 48, 108
Bme18I GGWCC 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 203
BmiI GGNNCC 1 cut(s) 81
BmrFI CCNGG 2 cut(s) 48, 108
BmsI GCATC 1 cut(s) 206
BpiI GAAGAC 1 cut(s) 181
BpuMI CCSGG 1 cut(s) 108
Bsa29I ATCGAT 1 cut(s) 268
Bsc4I CCNNNNNNNGG 1 cut(s) 212
BseBI CCWGG 1 cut(s) 48
BseCI ATCGAT 1 cut(s) 268
BseGI GGATG 2 cut(s) 43, 221
BseLI CCNNNNNNNGG 1 cut(s) 212
BseMII CTCAG 2 cut(s) 86, 137
BseXI GCAGC 5 cut(s) 16, 34, 46, 49, 294
Bsh1285I CGRYCG 1 cut(s) 272
BshVI ATCGAT 1 cut(s) 268
BsiEI CGRYCG 1 cut(s) 272
BsiHKAI GWGCWC 1 cut(s) 57
BsiSI CCGG 1 cut(s) 108
BslI CCNNNNNNNGG 1 cut(s) 212
BsmAI GTCTC 2 cut(s) 75, 126
BsmBI CGTCTC 1 cut(s) 126
Bsp1286I GDGCHC 1 cut(s) 57
Bsp143I GATC 1 cut(s) 269
BspCNI CTCAG 2 cut(s) 85, 136
BspDI ATCGAT 1 cut(s) 268
BspLI GGNNCC 1 cut(s) 81
BspMAI CTGCAG 1 cut(s) 284
BssMI GATC 1 cut(s) 269
Bst2UI CCWGG 1 cut(s) 48
Bst4CI ACNGT 1 cut(s) 134
BstAPI GCANNNNNTGC 1 cut(s) 288
BstC8I GCNNGC 4 cut(s) 9, 53, 57, 221
BstDEI CTNAG 2 cut(s) 72, 123
BstENI CCTNNNNNAGG 1 cut(s) 210
BstF5I GGATG 2 cut(s) 43, 221
BstKTI GATC 1 cut(s) 272
BstMAI GTCTC 2 cut(s) 75, 126
BstMBI GATC 1 cut(s) 269
BstMCI CGRYCG 1 cut(s) 272
BstMWI GCNNNNNNNGC 2 cut(s) 288, 311
BstNI CCWGG 1 cut(s) 48
BstNSI RCATGY 1 cut(s) 40
BstSCI CCNGG 2 cut(s) 46, 106
BstSFI CTRYAG 1 cut(s) 280
BstV1I GCAGC 5 cut(s) 16, 34, 46, 49, 294
BstV2I GAAGAC 1 cut(s) 181
BstXI CCANNNNNNTGG 1 cut(s) 200
Bsu15I ATCGAT 1 cut(s) 268
BsuTUI ATCGAT 1 cut(s) 268
BtsCI GGATG 2 cut(s) 43, 221
BtsIMutI CAGTG 2 cut(s) 131, 139
Cac8I GCNNGC 4 cut(s) 9, 53, 57, 221
Cfr13I GGNCC 1 cut(s) 203
ClaI ATCGAT 1 cut(s) 268
Csp6I GTAC 1 cut(s) 40
CviAII CATG 5 cut(s) 37, 67, 155, 288, 306
CviJI RGCY 5 cut(s) 82, 175, 182, 223, 285
CviKI_1 RGCY 5 cut(s) 82, 175, 182, 223, 285
CviQI GTAC 1 cut(s) 40
DdeI CTNAG 2 cut(s) 72, 123
DpnI GATC 1 cut(s) 271
DpnII GATC 1 cut(s) 269
Eco47I GGWCC 1 cut(s) 203
Eco57I CTGAAG 1 cut(s) 204
EcoNI CCTNNNNNAGG 1 cut(s) 210
EcoRII CCWGG 1 cut(s) 46
Esp3I CGTCTC 1 cut(s) 126
FaeI CATG 5 cut(s) 40, 70, 158, 291, 309
FalI AAGNNNNNCTT 1 cut(s) 32
FatI CATG 5 cut(s) 36, 66, 154, 287, 305
FauNDI CATATG 1 cut(s) 247
Fnu4HI GCNGC 5 cut(s) 5, 23, 60, 63, 283
FokI GGATG 2 cut(s) 30, 228
Fsp4HI GCNGC 5 cut(s) 5, 23, 60, 63, 283
FspBI CTAG 1 cut(s) 179
GluI GCNGC 5 cut(s) 5, 23, 60, 63, 283
HapII CCGG 1 cut(s) 108
Hin1II CATG 5 cut(s) 40, 70, 158, 291, 309
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HindIII AAGCTT 1 cut(s) 173
HinfI GANTC 1 cut(s) 299
HpaII CCGG 1 cut(s) 108
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 1 cut(s) 75
Hpy188III TCNNGA 1 cut(s) 193
Hpy8I GTNNAC 1 cut(s) 259
HpyCH4III ACNGT 1 cut(s) 134
HpyCH4V TGCA 7 cut(s) 4, 129, 212, 219, 282, 291, 305
HpyF10VI GCNNNNNNNGC 2 cut(s) 288, 311
HpyF3I CTNAG 2 cut(s) 72, 123
Hsp92II CATG 5 cut(s) 40, 70, 158, 291, 309
Kzo9I GATC 1 cut(s) 269
LmnI GCTCC 1 cut(s) 79
LpnPI CCDG 6 cut(s) 33, 60, 121, 198, 206, 312
Lsp1109I GCAGC 5 cut(s) 16, 34, 46, 49, 294
LweI GCATC 1 cut(s) 206
MaeI CTAG 1 cut(s) 179
MaeIII GTNAC 1 cut(s) 163
MalI GATC 1 cut(s) 271
MboI GATC 1 cut(s) 269
MboII GAAGA 2 cut(s) 8, 181
MhlI GDGCHC 1 cut(s) 57
MmeI TCCRAC 1 cut(s) 124
MnlI CCTC 2 cut(s) 114, 216
MseI TTAA 1 cut(s) 334
MslI CAYNNNNRTG 1 cut(s) 159
MspI CCGG 1 cut(s) 108
MspR9I CCNGG 2 cut(s) 48, 108
MvaI CCWGG 1 cut(s) 48
MwoI GCNNNNNNNGC 2 cut(s) 288, 311
NciI CCSGG 1 cut(s) 108
NdeI CATATG 1 cut(s) 247
NdeII GATC 1 cut(s) 269
NlaIII CATG 5 cut(s) 40, 70, 158, 291, 309
NlaIV GGNNCC 1 cut(s) 81
NmuCI GTSAC 1 cut(s) 163
NspI RCATGY 1 cut(s) 40
PciI ACATGT 1 cut(s) 36
PfeI GAWTC 1 cut(s) 299
PfoI TCCNGGA 1 cut(s) 106
PkrI GCNGC 5 cut(s) 6, 24, 61, 64, 284
Ple19I CGATCG 1 cut(s) 272
PscI ACATGT 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 46
PspGI CCWGG 1 cut(s) 46
PspN4I GGNNCC 1 cut(s) 81
PspPI GGNCC 1 cut(s) 203
PstI CTGCAG 1 cut(s) 284
PvuI CGATCG 1 cut(s) 272
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
RseI CAYNNNNRTG 1 cut(s) 159
SaqAI TTAA 1 cut(s) 334
SatI GCNGC 5 cut(s) 5, 23, 60, 63, 283
Sau3AI GATC 1 cut(s) 269
Sau96I GGNCC 1 cut(s) 203
ScrFI CCNGG 2 cut(s) 48, 108
SduI GDGCHC 1 cut(s) 57
SetI ASST 3 cut(s) 177, 184, 225
SfaNI GCATC 1 cut(s) 206
SfcI CTRYAG 1 cut(s) 280
SinI GGWCC 1 cut(s) 203
SmiMI CAYNNNNRTG 1 cut(s) 159
SspI AATATT 1 cut(s) 151
SspMI CTAG 1 cut(s) 179
StyD4I CCNGG 2 cut(s) 46, 106
TaaI ACNGT 1 cut(s) 134
TaqI TCGA 2 cut(s) 268, 272
TfiI GAWTC 1 cut(s) 299
Tru1I TTAA 1 cut(s) 334
Tru9I TTAA 1 cut(s) 334
TscAI CASTG 2 cut(s) 131, 139
TseFI GTSAC 1 cut(s) 163
TseI GCWGC 5 cut(s) 4, 22, 59, 62, 282
Tsp45I GTSAC 1 cut(s) 163
TspDTI ATGAA 1 cut(s) 143
TspRI CASTG 2 cut(s) 131, 139
VpaK11BI GGWCC 1 cut(s) 203
XagI CCTNNNNNAGG 1 cut(s) 210
XceI RCATGY 1 cut(s) 40
XcmI CCANNNNNNNNNTGG 1 cut(s) 73
XspI CTAG 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.