pycom15g09700

rhamnose biosynthetic enzyme

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Forward (+)
6315740 .. 6315970
231 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 231 bp
ATGAAGATAGCACGCTACGATAAGGTTGTGAACATTCCCAACAGCATGACAGTGCTCGATGAGCTCCTACCGATCTCCATTGAGATGGCTCGGAGGAACTGCAGAGGAATATGGAATTTCACCAACCCAGGAGTCATAAGCCGCAACGAGACCCTAGAGATGTTCAGGGATTACATTGATCCAAGGTTCAAGTGGAAAGGAGCAACAATGAATTGGATGCTTCAAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 map00520
Pfam Domains
Protein Families
Epimerase GDP_Man_Dehyd

Protein Analysis

77

Amino Acids

9.02

Weight (kDa)

9.42

Isoelectric Point (pI)

38.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 142
AclWI GGATC 1 cut(s) 173
AcsI RAATTY 1 cut(s) 115
AgsI TTSAA 2 cut(s) 190, 224
AjnI CCWGG 1 cut(s) 127
AluBI AGCT 2 cut(s) 64, 228
AluI AGCT 2 cut(s) 64, 228
Alw21I GWGCWC 2 cut(s) 57, 66
Alw26I GTCTC 1 cut(s) 143
AlwI GGATC 1 cut(s) 173
ApoI RAATTY 1 cut(s) 115
AsuHPI GGTGA 1 cut(s) 112
BanII GRGCYC 1 cut(s) 66
Bbv12I GWGCWC 2 cut(s) 57, 66
BccI CCATC 1 cut(s) 79
BciT130I CCWGG 1 cut(s) 129
BcoDI GTCTC 1 cut(s) 143
BfaI CTAG 1 cut(s) 155
BfmI CTRYAG 1 cut(s) 100
BisI GCNGC 1 cut(s) 142
BlsI GCNGC 1 cut(s) 143
Bme1390I CCNGG 1 cut(s) 129
BmrFI CCNGG 1 cut(s) 129
BmsI GCATC 1 cut(s) 207
BsaI GGTCTC 1 cut(s) 143
BsaJI CCNNGG 2 cut(s) 127, 182
BseBI CCWGG 1 cut(s) 129
BseDI CCNNGG 2 cut(s) 127, 182
BseGI GGATG 1 cut(s) 222
BsiHKAI GWGCWC 2 cut(s) 57, 66
BsmAI GTCTC 1 cut(s) 143
Bso31I GGTCTC 1 cut(s) 143
Bsp1286I GDGCHC 2 cut(s) 57, 66
Bsp143I GATC 2 cut(s) 72, 178
BspACI CCGC 1 cut(s) 142
BspMAI CTGCAG 1 cut(s) 104
BspPI GGATC 1 cut(s) 173
BspTNI GGTCTC 1 cut(s) 143
BssECI CCNNGG 2 cut(s) 127, 182
BssMI GATC 2 cut(s) 72, 178
BssT1I CCWWGG 1 cut(s) 182
Bst2UI CCWGG 1 cut(s) 129
Bst4CI ACNGT 1 cut(s) 52
BstC8I GCNNGC 1 cut(s) 13
BstF5I GGATG 1 cut(s) 222
BstKTI GATC 2 cut(s) 75, 181
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 2 cut(s) 72, 178
BstMWI GCNNNNNNNGC 1 cut(s) 61
BstNI CCWGG 1 cut(s) 129
BstSCI CCNGG 1 cut(s) 127
BstSFI CTRYAG 1 cut(s) 100
BstXI CCANNNNNNTGG 1 cut(s) 85
BtsCI GGATG 1 cut(s) 222
BtsIMutI CAGTG 1 cut(s) 57
Cac8I GCNNGC 1 cut(s) 13
CviAII CATG 1 cut(s) 46
CviJI RGCY 4 cut(s) 64, 89, 141, 228
CviKI_1 RGCY 4 cut(s) 64, 89, 141, 228
DpnI GATC 2 cut(s) 74, 180
DpnII GATC 2 cut(s) 72, 178
Ecl136II GAGCTC 1 cut(s) 64
Eco130I CCWWGG 1 cut(s) 182
Eco24I GRGCYC 1 cut(s) 66
Eco31I GGTCTC 1 cut(s) 143
Eco53kI GAGCTC 1 cut(s) 64
EcoICRI GAGCTC 1 cut(s) 64
EcoRII CCWGG 1 cut(s) 127
EcoT14I CCWWGG 1 cut(s) 182
EcoT38I GRGCYC 1 cut(s) 66
ErhI CCWWGG 1 cut(s) 182
FaeI CATG 1 cut(s) 49
FaiI YATR 3 cut(s) 47, 112, 137
FatI CATG 1 cut(s) 45
Fnu4HI GCNGC 1 cut(s) 142
FriOI GRGCYC 1 cut(s) 66
Fsp4HI GCNGC 1 cut(s) 142
FspBI CTAG 1 cut(s) 155
GluI GCNGC 1 cut(s) 142
Hin1II CATG 1 cut(s) 49
HinfI GANTC 1 cut(s) 132
HphI GGTGA 1 cut(s) 112
Hpy166II GTNNAC 1 cut(s) 31
Hpy188I TCNGA 1 cut(s) 93
Hpy8I GTNNAC 1 cut(s) 31
HpyCH4III ACNGT 1 cut(s) 52
HpyCH4V TGCA 1 cut(s) 102
HpyF10VI GCNNNNNNNGC 1 cut(s) 61
Hsp92II CATG 1 cut(s) 49
Kzo9I GATC 2 cut(s) 72, 178
LmnI GCTCC 2 cut(s) 69, 200
LpnPI CCDG 3 cut(s) 114, 141, 151
LweI GCATC 1 cut(s) 207
MaeI CTAG 1 cut(s) 155
MalI GATC 2 cut(s) 74, 180
MboI GATC 2 cut(s) 72, 178
MboII GAAGA 1 cut(s) 16
MhlI GDGCHC 2 cut(s) 57, 66
MluCI AATT 2 cut(s) 115, 211
MlyI GAGTC 1 cut(s) 141
MnlI CCTC 2 cut(s) 87, 98
MslI CAYNNNNRTG 2 cut(s) 50, 83
MspR9I CCNGG 1 cut(s) 129
MvaI CCWGG 1 cut(s) 129
MwoI GCNNNNNNNGC 1 cut(s) 61
NdeII GATC 2 cut(s) 72, 178
NlaIII CATG 1 cut(s) 49
PkrI GCNGC 1 cut(s) 143
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
Psp124BI GAGCTC 1 cut(s) 66
Psp6I CCWGG 1 cut(s) 127
PspGI CCWGG 1 cut(s) 127
PstI CTGCAG 1 cut(s) 104
RseI CAYNNNNRTG 2 cut(s) 50, 83
SacI GAGCTC 1 cut(s) 66
SatI GCNGC 1 cut(s) 142
Sau3AI GATC 2 cut(s) 72, 178
SchI GAGTC 1 cut(s) 141
ScrFI CCNGG 1 cut(s) 129
SduI GDGCHC 2 cut(s) 57, 66
SetI ASST 4 cut(s) 27, 66, 188, 230
SfaNI GCATC 1 cut(s) 207
SfcI CTRYAG 1 cut(s) 100
SmiMI CAYNNNNRTG 2 cut(s) 50, 83
Sse9I AATT 2 cut(s) 115, 211
SsiI CCGC 1 cut(s) 142
SspMI CTAG 1 cut(s) 155
SstI GAGCTC 1 cut(s) 66
StyD4I CCNGG 1 cut(s) 127
StyI CCWWGG 1 cut(s) 182
TaaI ACNGT 1 cut(s) 52
TaqI TCGA 1 cut(s) 57
TasI AATT 2 cut(s) 115, 211
TauI GCSGC 1 cut(s) 144
TscAI CASTG 1 cut(s) 57
TspDTI ATGAA 2 cut(s) 17, 224
TspRI CASTG 1 cut(s) 57
XapI RAATTY 1 cut(s) 115
XcmI CCANNNNNNNNNTGG 1 cut(s) 189
XspI CTAG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.