pycom15g09780

Exocyst complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0029347
Physical Location & Seq
Forward (+)
6372235 .. 6372510
276 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 276 bp
ATGTCAGATAAAGATCTAAGGGAGAAGACCTGCCAGCTCATAGTGCAGGCTGTTGTGCCTGTTTACAGAAGTTACATGCAGAATTATGGGCCCTTGGTCGAGCAAGATGCAAGTTCAAGCAAGTATGCAAAGTACTCTGTGCACACTTTTGAAAAAATGCTCATGTCTCTTTTTCAGCCAAAGCCGGTTAGATATGGCAGTTTCAAAGGTAGGCAAATGAGCGGGAAATTCAATGGAGTAGCAGATCTCCGCCGTACTACCTCTGCGGTTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006887 GO:0008150 GO:0009987 GO:0016192 GO:0032940 GO:0046903 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
ko04910 map04910
Pfam Domains
Protein Families
Exo70

Protein Analysis

92

Amino Acids

10.38

Weight (kDa)

9.76

Isoelectric Point (pI)

54.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo70_C PF03081 1 - 55 1.8e-11 Exo70 exocyst complex subunit C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0029347)

Species Orthologous Gene IDs
pyrus_communis pycom08g10640 pycom15g09780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 38
AccBSI CCGCTC 1 cut(s) 222
AciI CCGC 3 cut(s) 222, 250, 266
AcsI RAATTY 1 cut(s) 227
AfaI GTAC 2 cut(s) 134, 256
AgsI TTSAA 4 cut(s) 117, 152, 205, 232
AluBI AGCT 1 cut(s) 37
AluI AGCT 1 cut(s) 37
Alw21I GWGCWC 1 cut(s) 144
Alw26I GTCTC 1 cut(s) 171
Alw44I GTGCAC 1 cut(s) 140
AoxI GGCC 1 cut(s) 89
ApaI GGGCCC 1 cut(s) 93
ApaLI GTGCAC 1 cut(s) 140
ApoI RAATTY 1 cut(s) 227
AspS9I GGNCC 2 cut(s) 89, 90
BaeGI GKGCMC 2 cut(s) 93, 144
BanII GRGCYC 1 cut(s) 93
BbsI GAAGAC 1 cut(s) 32
Bbv12I GWGCWC 1 cut(s) 144
BceAI ACGGC 1 cut(s) 237
BcgI CGANNNNNNTGC 2 cut(s) 89, 123
BcoDI GTCTC 1 cut(s) 171
BfuAI ACCTGC 1 cut(s) 38
BglII AGATCT 2 cut(s) 13, 244
BmcAI AGTACT 1 cut(s) 134
BmgT120I GGNCC 2 cut(s) 89, 90
BmiI GGNNCC 1 cut(s) 91
BmsI GCATC 1 cut(s) 97
BpiI GAAGAC 1 cut(s) 32
BsaBI GATNNNNATC 1 cut(s) 12
BsaJI CCNNGG 1 cut(s) 93
Bse118I RCCGGY 1 cut(s) 184
Bse8I GATNNNNATC 1 cut(s) 12
BseDI CCNNGG 1 cut(s) 93
BseJI GATNNNNATC 1 cut(s) 12
BseSI GKGCMC 2 cut(s) 93, 144
BsgI GTGCAG 1 cut(s) 65
BshFI GGCC 1 cut(s) 91
BsiHKAI GWGCWC 1 cut(s) 144
BsiSI CCGG 1 cut(s) 185
BsmAI GTCTC 1 cut(s) 171
BsnI GGCC 1 cut(s) 91
Bsp120I GGGCCC 1 cut(s) 89
Bsp1286I GDGCHC 2 cut(s) 93, 144
Bsp143I GATC 2 cut(s) 13, 244
BspACI CCGC 3 cut(s) 222, 250, 266
BspANI GGCC 1 cut(s) 91
BspLI GGNNCC 1 cut(s) 91
BspMI ACCTGC 1 cut(s) 38
BsrBI CCGCTC 1 cut(s) 222
BsrFI RCCGGY 1 cut(s) 184
BssAI RCCGGY 1 cut(s) 184
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 2 cut(s) 13, 244
BssT1I CCWWGG 1 cut(s) 93
BstC8I GCNNGC 2 cut(s) 35, 48
BstDEI CTNAG 1 cut(s) 17
BstKTI GATC 2 cut(s) 16, 247
BstMAI GTCTC 1 cut(s) 171
BstMBI GATC 2 cut(s) 13, 244
BstMWI GCNNNNNNNGC 1 cut(s) 43
BstNSI RCATGY 1 cut(s) 79
BstSLI GKGCMC 2 cut(s) 93, 144
BstV2I GAAGAC 1 cut(s) 32
BstX2I RGATCY 2 cut(s) 13, 244
BstYI RGATCY 2 cut(s) 13, 244
BsuRI GGCC 1 cut(s) 91
BveI ACCTGC 1 cut(s) 38
Cac8I GCNNGC 2 cut(s) 35, 48
Cfr10I RCCGGY 1 cut(s) 184
Cfr13I GGNCC 2 cut(s) 89, 90
Csp6I GTAC 2 cut(s) 133, 255
CviAII CATG 2 cut(s) 76, 163
CviJI RGCY 5 cut(s) 37, 50, 91, 178, 184
CviKI_1 RGCY 5 cut(s) 37, 50, 91, 178, 184
CviQI GTAC 2 cut(s) 133, 255
DdeI CTNAG 1 cut(s) 17
DpnI GATC 2 cut(s) 15, 246
DpnII GATC 2 cut(s) 13, 244
EciI GGCGGA 1 cut(s) 239
Eco130I CCWWGG 1 cut(s) 93
Eco24I GRGCYC 1 cut(s) 93
EcoO109I RGGNCCY 1 cut(s) 90
EcoT14I CCWWGG 1 cut(s) 93
EcoT38I GRGCYC 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 2 cut(s) 79, 166
FaiI YATR 6 cut(s) 41, 77, 87, 126, 164, 195
FatI CATG 2 cut(s) 75, 162
FauI CCCGC 1 cut(s) 215
FriOI GRGCYC 1 cut(s) 93
HaeIII GGCC 1 cut(s) 91
HapII CCGG 1 cut(s) 185
Hin1II CATG 2 cut(s) 79, 166
HpaII CCGG 1 cut(s) 185
Hpy166II GTNNAC 2 cut(s) 64, 142
Hpy188I TCNGA 1 cut(s) 7
Hpy8I GTNNAC 2 cut(s) 64, 142
HpyCH4V TGCA 5 cut(s) 46, 79, 110, 128, 142
HpyF10VI GCNNNNNNNGC 1 cut(s) 43
HpyF3I CTNAG 1 cut(s) 17
Hsp92II CATG 2 cut(s) 79, 166
Kzo9I GATC 2 cut(s) 13, 244
LpnPI CCDG 5 cut(s) 32, 43, 47, 72, 198
LweI GCATC 1 cut(s) 97
MaeIII GTNAC 1 cut(s) 71
MalI GATC 2 cut(s) 15, 246
MbiI CCGCTC 1 cut(s) 222
MboI GATC 2 cut(s) 13, 244
MboII GAAGA 1 cut(s) 37
MflI RGATCY 2 cut(s) 13, 244
MhlI GDGCHC 2 cut(s) 93, 144
MluCI AATT 2 cut(s) 82, 227
MnlI CCTC 1 cut(s) 271
MspI CCGG 1 cut(s) 185
MwoI GCNNNNNNNGC 1 cut(s) 43
NdeII GATC 2 cut(s) 13, 244
NlaIII CATG 2 cut(s) 79, 166
NlaIV GGNNCC 1 cut(s) 91
NspI RCATGY 1 cut(s) 79
PspN4I GGNNCC 1 cut(s) 91
PspOMI GGGCCC 1 cut(s) 89
PspPI GGNCC 2 cut(s) 89, 90
PsuI RGATCY 2 cut(s) 13, 244
RsaI GTAC 2 cut(s) 134, 256
RsaNI GTAC 2 cut(s) 133, 255
Sau3AI GATC 2 cut(s) 13, 244
Sau96I GGNCC 2 cut(s) 89, 90
ScaI AGTACT 1 cut(s) 134
SduI GDGCHC 2 cut(s) 93, 144
SetI ASST 4 cut(s) 32, 39, 211, 263
SfaNI GCATC 1 cut(s) 97
Sse9I AATT 2 cut(s) 82, 227
SsiI CCGC 3 cut(s) 222, 250, 266
StyI CCWWGG 1 cut(s) 93
TaqI TCGA 1 cut(s) 99
TasI AATT 2 cut(s) 82, 227
TatI WGTACW 1 cut(s) 132
VneI GTGCAC 1 cut(s) 140
XapI RAATTY 1 cut(s) 227
XceI RCATGY 1 cut(s) 79
ZrmI AGTACT 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.