Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

6563952 .. 6564896

Gene Structure 945 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGAGAATGTGAAGATACTTCTTAACAATTTATTAGACGATGATAATGACAAGACAGCATCAGATTTAATTACCTCAACTACACTTATGGATGGTTATCTTAAAAACGGAAATATGGTTCAGGCACTTCGTAATTGGGATGACATGGTCCAAATGAATGCCCAAGTAGATGTCGTTGCATATAATGTTCTCGTCAATGGATTTTGTTTGAGTCGAGACATGAACCTTGCTTATGGTTCCCTTTGTGAAATGATCAAAAGAGGATTGCTTCCTAATGTTATTACTTTTAATACACTTATAAGTGGTCTTTGCAAAGCAGGAAAATTAGAGGAGGCTTGCTACGTCCATGAAAGTATGTCAAAAATGGGAGTTACTCCAAATGAAGTTTCATACAAAATAATTGTTCAGGGCCTGTGTATTAAGGGAGAAGTTTTCAGAGCTAACAAGTTTCTTCTTCGTATGCTAGAGAAGTCAATGGTACCTGAGCCACTACTATGGAATTGTATTATCGATTGTTATGGAAGACATGGGGATCTTAGTGCTGCACTCTCTGTCAGGGATCATATGTTCTCTTCTGGTGTTCAACCAAATGTGTATACTTACAATGCATTGATCCACGCCCAAGTAAAAGGGGGAAACATTGATCGTGCTCTTGCTTTCAAAAAGGAAATGCTTATGTCTGGTCTTTGTCCTGATGTTGTCACCTATAATTTGTTGATAGGTGCTGCTTGTAAATTAGGGCGCATTCTTTTTGCATTCTGGTTATATGATGAAATGCTGAGAATAGGATTTGATCCAGATATGTTTACTTACACTGCACTAATCAGAGGGCACTGCGTGAGAGGTAACATGAAGGAGGCAGAAGAGCTTTTTATGAAGATACAGGAATCTGGTTTAACTCTCGATTATGTTCCATATCGTATACTTTTCAAGAAGTACTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

315

Amino Acids

35.44

Weight (kDa)

6.23

Isoelectric Point (pI)

24.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	22 - 69	7.4e-12	PPR repeat family
PPR_long	PF17177	39 - 155	3.5e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	47 - 101	7.7e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	57 - 105	2.4e-15	PPR repeat family
PPR_3	PF13812	83 - 135	1.6e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	87 - 119	4.6e-14	PPR repeat
PPR_2	PF13041	91 - 139	2e-17	PPR repeat family
PPR	PF01535	94 - 124	3.2e-08	PPR repeat
PPR_1	PF12854	122 - 154	8.8e-06	PPR repeat
TPR_24	PF23276	154 - 258	7e-07	Fungal tetratrico peptide repeats
PPR_2	PF13041	165 - 207	1.1e-12	PPR repeat family
PPR_long	PF17177	171 - 309	4.2e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	186 - 242	4.7e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	193 - 224	1e-06	PPR repeat
PPR_2	PF13041	200 - 245	2.7e-11	PPR repeat family
PPR_1	PF12854	228 - 259	6e-08	PPR repeat
PPR_2	PF13041	231 - 279	4.4e-15	PPR repeat family
PPR	PF01535	234 - 264	1.3e-06	PPR repeat
PPR_3	PF13812	255 - 300	1.4e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	263 - 291	1.3e-08	PPR repeat
PPR	PF01535	269 - 299	8.6e-08	PPR repeat
PPR_2	PF13041	269 - 314	1.2e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	299
Acc65I	GGTACC	1 cut(s)	478
AccB1I	GGYRCC	1 cut(s)	478
AccI	GTMKAC	2 cut(s)	596, 922
AclWI	GGATC	4 cut(s)	540, 567, 607, 788
AdeI	CACNNNGTG	1 cut(s)	838
AfaI	GTAC	2 cut(s)	480, 938
AgsI	TTSAA	3 cut(s)	584, 661, 931
AjuI	GAANNNNNNNTTGG	2 cut(s)	370, 402
AloI	GAACNNNNNNTCC	4 cut(s)	102, 134, 551, 583
AluBI	AGCT	2 cut(s)	440, 868
AluI	AGCT	2 cut(s)	440, 868
Alw21I	GWGCWC	1 cut(s)	652
Alw26I	GTCTC	1 cut(s)	210
AlwI	GGATC	4 cut(s)	540, 567, 607, 788
AlwNI	CAGNNNCTG	1 cut(s)	412
AoxI	GGCC	1 cut(s)	409
ApeKI	GCWGC	2 cut(s)	542, 725
Asp718I	GGTACC	1 cut(s)	478
AspLEI	GCGC	1 cut(s)	744
AspS9I	GGNCC	2 cut(s)	148, 409
AsuHPI	GGTGA	1 cut(s)	694
AvaII	GGWCC	1 cut(s)	148
BaeGI	GKGCMC	1 cut(s)	834
BanI	GGYRCC	1 cut(s)	478
BbsI	GAAGAC	1 cut(s)	529
Bbv12I	GWGCWC	1 cut(s)	652
BbvI	GCAGC	2 cut(s)	529, 712
BccI	CCATC	1 cut(s)	86
BclI	TGATCA	1 cut(s)	252
BcoDI	GTCTC	1 cut(s)	210
BfaI	CTAG	1 cut(s)	464
BisI	GCNGC	2 cut(s)	543, 726
BlsI	GCNGC	2 cut(s)	544, 727
BmcAI	AGTACT	1 cut(s)	938
Bme18I	GGWCC	1 cut(s)	148
BmgT120I	GGNCC	2 cut(s)	148, 409
BmiI	GGNNCC	2 cut(s)	238, 480
BmsI	GCATC	1 cut(s)	68
BpiI	GAAGAC	1 cut(s)	529
Bpu10I	CCTNAGC	1 cut(s)	483
Bsa29I	ATCGAT	1 cut(s)	510
BsaBI	GATNNNNATC	1 cut(s)	96
Bse8I	GATNNNNATC	1 cut(s)	96
BseCI	ATCGAT	1 cut(s)	510
BseGI	GGATG	2 cut(s)	97, 145
BseJI	GATNNNNATC	1 cut(s)	96
BseMII	CTCAG	2 cut(s)	474, 770
BseRI	GAGGAG	1 cut(s)	344
BseSI	GKGCMC	1 cut(s)	834
BseXI	GCAGC	2 cut(s)	529, 712
BsgI	GTGCAG	2 cut(s)	528, 801
BshFI	GGCC	1 cut(s)	411
BshNI	GGYRCC	1 cut(s)	478
BshVI	ATCGAT	1 cut(s)	510
BsiHKAI	GWGCWC	1 cut(s)	652
BsmAI	GTCTC	1 cut(s)	210
BsmI	GAATGC	3 cut(s)	163, 744, 755
BsnI	GGCC	1 cut(s)	411
Bsp1286I	GDGCHC	2 cut(s)	652, 834
Bsp143I	GATC	6 cut(s)	252, 532, 559, 612, 643, 793
BspANI	GGCC	1 cut(s)	411
BspCNI	CTCAG	2 cut(s)	475, 771
BspDI	ATCGAT	1 cut(s)	510
BspLI	GGNNCC	2 cut(s)	238, 480
BspPI	GGATC	4 cut(s)	540, 567, 607, 788
BspQI	GCTCTTC	1 cut(s)	858
BspT107I	GGYRCC	1 cut(s)	478
BssMI	GATC	6 cut(s)	252, 532, 559, 612, 643, 793
BssNAI	GTATAC	2 cut(s)	597, 923
Bst1107I	GTATAC	2 cut(s)	597, 923
Bst6I	CTCTTC	2 cut(s)	577, 858
BstC8I	GCNNGC	1 cut(s)	337
BstDEI	CTNAG	3 cut(s)	483, 536, 779
BstF5I	GGATG	2 cut(s)	97, 145
BstHHI	GCGC	1 cut(s)	744
BstKTI	GATC	6 cut(s)	255, 535, 562, 615, 646, 796
BstMAI	GTCTC	1 cut(s)	210
BstMBI	GATC	6 cut(s)	252, 532, 559, 612, 643, 793
BstSLI	GKGCMC	1 cut(s)	834
BstV1I	GCAGC	2 cut(s)	529, 712
BstV2I	GAAGAC	1 cut(s)	529
BstX2I	RGATCY	1 cut(s)	532
BstXI	CCANNNNNNTGG	1 cut(s)	495
BstYI	RGATCY	1 cut(s)	532
BstZ17I	GTATAC	2 cut(s)	597, 923
Bsu15I	ATCGAT	1 cut(s)	510
BsuRI	GGCC	1 cut(s)	411
BsuTUI	ATCGAT	1 cut(s)	510
BtsCI	GGATG	2 cut(s)	97, 145
BtsI	GCAGTG	2 cut(s)	813, 832
BtsIMutI	CAGTG	2 cut(s)	813, 832
Cac8I	GCNNGC	1 cut(s)	337
CaiI	CAGNNNCTG	1 cut(s)	412
CfoI	GCGC	1 cut(s)	744
Cfr13I	GGNCC	2 cut(s)	148, 409
ClaI	ATCGAT	1 cut(s)	510
Csp6I	GTAC	2 cut(s)	479, 937
CviAII	CATG	5 cut(s)	145, 220, 347, 527, 850
CviJI	RGCY	5 cut(s)	335, 411, 440, 487, 868
CviKI_1	RGCY	5 cut(s)	335, 411, 440, 487, 868
CviQI	GTAC	2 cut(s)	479, 937
DdeI	CTNAG	3 cut(s)	483, 536, 779
DpnI	GATC	6 cut(s)	254, 534, 561, 614, 645, 795
DpnII	GATC	6 cut(s)	252, 532, 559, 612, 643, 793
DraIII	CACNNNGTG	1 cut(s)	838
Eam1104I	CTCTTC	2 cut(s)	577, 858
EarI	CTCTTC	2 cut(s)	577, 858
Eco47I	GGWCC	1 cut(s)	148
EcoO109I	RGGNCCY	1 cut(s)	409
EcoT22I	ATGCAT	1 cut(s)	610
FaeI	CATG	5 cut(s)	148, 223, 350, 530, 853
FatI	CATG	5 cut(s)	144, 219, 346, 526, 849
FauNDI	CATATG	1 cut(s)	564
FbaI	TGATCA	1 cut(s)	252
FblI	GTMKAC	2 cut(s)	596, 922
Fnu4HI	GCNGC	2 cut(s)	543, 726
FokI	GGATG	2 cut(s)	104, 152
Fsp4HI	GCNGC	2 cut(s)	543, 726
FspBI	CTAG	1 cut(s)	464
GlaI	GCGC	1 cut(s)	743
GluI	GCNGC	2 cut(s)	543, 726
HaeIII	GGCC	1 cut(s)	411
HhaI	GCGC	1 cut(s)	744
Hin1II	CATG	5 cut(s)	148, 223, 350, 530, 853
Hin6I	GCGC	1 cut(s)	742
HinP1I	GCGC	1 cut(s)	742
HinfI	GANTC	2 cut(s)	211, 887
HphI	GGTGA	1 cut(s)	694
Hpy166II	GTNNAC	3 cut(s)	597, 807, 923
Hpy188I	TCNGA	3 cut(s)	64, 437, 827
Hpy188III	TCNNGA	5 cut(s)	215, 692, 797, 902, 931
Hpy8I	GTNNAC	3 cut(s)	597, 807, 923
HpyAV	CCTTC	1 cut(s)	847
HpyCH4IV	ACGT	1 cut(s)	342
HpyCH4V	TGCA	6 cut(s)	179, 312, 545, 608, 755, 818
HpyF3I	CTNAG	3 cut(s)	483, 536, 779
HpySE526I	ACGT	1 cut(s)	342
Hsp92II	CATG	5 cut(s)	148, 223, 350, 530, 853
HspAI	GCGC	1 cut(s)	742
KpnI	GGTACC	1 cut(s)	482
Ksp22I	TGATCA	1 cut(s)	252
Kzo9I	GATC	6 cut(s)	252, 532, 559, 612, 643, 793
LguI	GCTCTTC	1 cut(s)	858
Lsp1109I	GCAGC	2 cut(s)	529, 712
LweI	GCATC	1 cut(s)	68
MaeI	CTAG	1 cut(s)	464
MaeII	ACGT	1 cut(s)	342
MaeIII	GTNAC	3 cut(s)	370, 700, 845
MalI	GATC	6 cut(s)	254, 534, 561, 614, 645, 795
MboI	GATC	6 cut(s)	252, 532, 559, 612, 643, 793
MboII	GAAGA	7 cut(s)	25, 443, 446, 534, 564, 875, 889
MflI	RGATCY	1 cut(s)	532
MhlI	GDGCHC	2 cut(s)	652, 834
MluCI	AATT	8 cut(s)	28, 69, 133, 323, 399, 499, 709, 734
MlyI	GAGTC	1 cut(s)	220
MnlI	CCTC	7 cut(s)	85, 254, 322, 325, 821, 836, 850
Mph1103I	ATGCAT	1 cut(s)	610
MseI	TTAA	6 cut(s)	24, 68, 102, 288, 420, 896
MslI	CAYNNNNRTG	1 cut(s)	493
Mva1269I	GAATGC	3 cut(s)	163, 744, 755
NdeI	CATATG	1 cut(s)	564
NdeII	GATC	6 cut(s)	252, 532, 559, 612, 643, 793
NlaIII	CATG	5 cut(s)	148, 223, 350, 530, 853
NlaIV	GGNNCC	2 cut(s)	238, 480
NmuCI	GTSAC	1 cut(s)	700
NsiI	ATGCAT	1 cut(s)	610
PciSI	GCTCTTC	1 cut(s)	858
PctI	GAATGC	3 cut(s)	163, 744, 755
PfeI	GAWTC	1 cut(s)	887
PflFI	GACNNNGTC	1 cut(s)	146
PkrI	GCNGC	2 cut(s)	544, 727
PleI	GAGTC	1 cut(s)	219
PpsI	GAGTC	1 cut(s)	219
PsiI	TTATAA	1 cut(s)	299
PspN4I	GGNNCC	2 cut(s)	238, 480
PspPI	GGNCC	2 cut(s)	148, 409
PstNI	CAGNNNCTG	1 cut(s)	412
PsuI	RGATCY	1 cut(s)	532
PsyI	GACNNNGTC	1 cut(s)	146
RsaI	GTAC	2 cut(s)	480, 938
RsaNI	GTAC	2 cut(s)	479, 937
RseI	CAYNNNNRTG	1 cut(s)	493
SapI	GCTCTTC	1 cut(s)	858
SaqAI	TTAA	6 cut(s)	24, 68, 102, 288, 420, 896
SatI	GCNGC	2 cut(s)	543, 726
Sau3AI	GATC	6 cut(s)	252, 532, 559, 612, 643, 793
Sau96I	GGNCC	2 cut(s)	148, 409
ScaI	AGTACT	1 cut(s)	938
SchI	GAGTC	1 cut(s)	220
SduI	GDGCHC	2 cut(s)	652, 834
SetI	ASST	9 cut(s)	77, 228, 345, 442, 484, 707, 724, 847, 870
SfaNI	GCATC	1 cut(s)	68
SinI	GGWCC	1 cut(s)	148
SmiMI	CAYNNNNRTG	1 cut(s)	493
Sse9I	AATT	8 cut(s)	28, 69, 133, 323, 399, 499, 709, 734
SspMI	CTAG	1 cut(s)	464
TaiI	ACGT	1 cut(s)	345
TaqI	TCGA	3 cut(s)	214, 510, 903
TasI	AATT	8 cut(s)	28, 69, 133, 323, 399, 499, 709, 734
TatI	WGTACW	1 cut(s)	936
TfiI	GAWTC	1 cut(s)	887
Tru1I	TTAA	6 cut(s)	24, 68, 102, 288, 420, 896
Tru9I	TTAA	6 cut(s)	24, 68, 102, 288, 420, 896
TscAI	CASTG	2 cut(s)	820, 839
TseFI	GTSAC	1 cut(s)	700
TseI	GCWGC	2 cut(s)	542, 725
Tsp45I	GTSAC	1 cut(s)	700
TspDTI	ATGAA	8 cut(s)	170, 236, 363, 378, 396, 786, 866, 890
TspGWI	ACGGA	1 cut(s)	123
TspRI	CASTG	2 cut(s)	820, 839
Tth111I	GACNNNGTC	1 cut(s)	146
VpaK11BI	GGWCC	1 cut(s)	148
XmiI	GTMKAC	2 cut(s)	596, 922
XspI	CTAG	1 cut(s)	464
ZrmI	AGTACT	1 cut(s)	938
Zsp2I	ATGCAT	1 cut(s)	610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.