Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

6665083 .. 6665700

Gene Structure 618 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGTCGTCATGGTCGGCAACAGCCTCGCCGCTGCCCTTGCTGTTCCGGAGGCGCTCGAGCGGCGAGATTAGGAATTTGGCCTCGGTTTCAAGCAGCATCTTACCGGCTTTTGGAACTGTGGTCGATGAAGCCCACTTGCAGCTCAAGAAGTTTGTTATTGCTCCCTATGACAGAAGATACAGGTGGTGGCAGGCGTTCTTGGTGGTGCTTGTGATATTCTCAGCATGGGCGTCGCCGTTCGAACTGGCCTTCAAAAAGGTGGCGACTGGGTCACTCCTGCCCGTCGATTTGGTTGTGGATGCATTCTTCGCCGTTGATATCATCCTAACTTTCTTTGTAGCTTACTTGGACAAGTCAACCTACCTCTTAGTACTTGATCACAAGAAAATCGCTTTGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009624 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ion_trans KHA cNMP_binding

Protein Analysis

134

Amino Acids

15.02

Weight (kDa)

9.75

Isoelectric Point (pI)

55.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ion_trans	PF00520	60 - 122	1.1e-06	Ion transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	60
AccIII	TCCGGA	1 cut(s)	45
AciI	CCGC	2 cut(s)	29, 60
AcsI	RAATTY	1 cut(s)	73
AcyI	GRCGYC	1 cut(s)	230
AfaI	GTAC	1 cut(s)	372
AfiI	CCNNNNNNNGG	1 cut(s)	110
AgsI	TTSAA	2 cut(s)	90, 253
AluBI	AGCT	2 cut(s)	142, 341
AluI	AGCT	2 cut(s)	142, 341
Ama87I	CYCGRG	1 cut(s)	55
Aor13HI	TCCGGA	1 cut(s)	45
AoxI	GGCC	2 cut(s)	78, 246
ApeKI	GCWGC	3 cut(s)	31, 93, 139
ApoI	RAATTY	1 cut(s)	73
AspLEI	GCGC	1 cut(s)	54
AsuII	TTCGAA	1 cut(s)	240
AvaI	CYCGRG	1 cut(s)	55
BbvI	GCAGC	3 cut(s)	18, 105, 151
BceAI	ACGGC	2 cut(s)	220, 296
BcgI	CGANNNNNNTGC	4 cut(s)	6, 40, 213, 247
BclI	TGATCA	1 cut(s)	376
BfoI	RGCGCY	1 cut(s)	55
BisI	GCNGC	5 cut(s)	29, 32, 61, 94, 140
BlsI	GCNGC	5 cut(s)	30, 33, 62, 95, 141
BmcAI	AGTACT	1 cut(s)	372
BmeT110I	CYCGRG	1 cut(s)	55
BmrI	ACTGGG	1 cut(s)	276
BmsI	GCATC	2 cut(s)	105, 289
BmuI	ACTGGG	1 cut(s)	276
Bpu14I	TTCGAA	1 cut(s)	240
BpuEI	CTTGAG	1 cut(s)	128
BsaHI	GRCGYC	1 cut(s)	230
BsaJI	CCNNGG	1 cut(s)	81
BsaWI	WCCGGW	1 cut(s)	45
Bsc4I	CCNNNNNNNGG	1 cut(s)	110
Bse118I	RCCGGY	1 cut(s)	103
Bse1I	ACTGG	2 cut(s)	249, 271
BseAI	TCCGGA	1 cut(s)	45
BseDI	CCNNGG	1 cut(s)	81
BseGI	GGATG	2 cut(s)	304, 321
BseLI	CCNNNNNNNGG	1 cut(s)	110
BseMII	CTCAG	1 cut(s)	234
BseNI	ACTGG	2 cut(s)	249, 271
BseXI	GCAGC	3 cut(s)	18, 105, 151
BshFI	GGCC	2 cut(s)	80, 248
BsiHKCI	CYCGRG	1 cut(s)	55
BsiSI	CCGG	2 cut(s)	46, 104
BslI	CCNNNNNNNGG	1 cut(s)	110
BsmI	GAATGC	1 cut(s)	302
BsnI	GGCC	2 cut(s)	80, 248
BsoBI	CYCGRG	1 cut(s)	55
Bsp119I	TTCGAA	1 cut(s)	240
Bsp13I	TCCGGA	1 cut(s)	45
Bsp143I	GATC	1 cut(s)	376
BspACI	CCGC	2 cut(s)	29, 60
BspANI	GGCC	2 cut(s)	80, 248
BspCNI	CTCAG	1 cut(s)	233
BspEI	TCCGGA	1 cut(s)	45
BspT104I	TTCGAA	1 cut(s)	240
BsrBI	CCGCTC	1 cut(s)	60
BsrFI	RCCGGY	1 cut(s)	103
BsrI	ACTGG	2 cut(s)	249, 271
BssAI	RCCGGY	1 cut(s)	103
BssECI	CCNNGG	1 cut(s)	81
BssMI	GATC	1 cut(s)	376
BssNI	GRCGYC	1 cut(s)	230
Bst4CI	ACNGT	1 cut(s)	118
BstACI	GRCGYC	1 cut(s)	230
BstBI	TTCGAA	1 cut(s)	240
BstC8I	GCNNGC	1 cut(s)	192
BstDEI	CTNAG	2 cut(s)	220, 367
BstF5I	GGATG	2 cut(s)	304, 321
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	1 cut(s)	54
BstKTI	GATC	1 cut(s)	379
BstMBI	GATC	1 cut(s)	376
BstMWI	GCNNNNNNNGC	3 cut(s)	37, 60, 308
BstV1I	GCAGC	3 cut(s)	18, 105, 151
BsuRI	GGCC	2 cut(s)	80, 248
BtsCI	GGATG	2 cut(s)	304, 321
Cac8I	GCNNGC	1 cut(s)	192
CfoI	GCGC	1 cut(s)	54
Cfr10I	RCCGGY	1 cut(s)	103
CseI	GACGC	1 cut(s)	219
Csp6I	GTAC	1 cut(s)	371
CviAII	CATG	2 cut(s)	9, 225
CviJI	RGCY	7 cut(s)	23, 80, 107, 131, 142, 248, 341
CviKI_1	RGCY	7 cut(s)	23, 80, 107, 131, 142, 248, 341
CviQI	GTAC	1 cut(s)	371
DdeI	CTNAG	2 cut(s)	220, 367
DpnI	GATC	1 cut(s)	378
DpnII	GATC	1 cut(s)	376
Eco32I	GATATC	1 cut(s)	319
Eco88I	CYCGRG	1 cut(s)	55
EcoRV	GATATC	1 cut(s)	319
EcoT22I	ATGCAT	1 cut(s)	304
FaeI	CATG	2 cut(s)	12, 228
FaiI	YATR	3 cut(s)	10, 168, 226
FatI	CATG	2 cut(s)	8, 224
FbaI	TGATCA	1 cut(s)	376
Fnu4HI	GCNGC	5 cut(s)	29, 32, 61, 94, 140
FokI	GGATG	2 cut(s)	308, 311
Fsp4HI	GCNGC	5 cut(s)	29, 32, 61, 94, 140
GlaI	GCGC	1 cut(s)	53
GluI	GCNGC	5 cut(s)	29, 32, 61, 94, 140
HaeII	RGCGCY	1 cut(s)	55
HaeIII	GGCC	2 cut(s)	80, 248
HapII	CCGG	2 cut(s)	46, 104
HgaI	GACGC	1 cut(s)	219
HhaI	GCGC	1 cut(s)	54
Hin1I	GRCGYC	1 cut(s)	230
Hin1II	CATG	2 cut(s)	12, 228
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HincII	GTYRAC	1 cut(s)	357
HindII	GTYRAC	1 cut(s)	357
HpaII	CCGG	2 cut(s)	46, 104
Hpy166II	GTNNAC	1 cut(s)	357
Hpy188III	TCNNGA	2 cut(s)	46, 145
Hpy8I	GTNNAC	1 cut(s)	357
Hpy99I	CGWCG	2 cut(s)	235, 287
HpyAV	CCTTC	1 cut(s)	259
HpyCH4III	ACNGT	1 cut(s)	118
HpyCH4V	TGCA	2 cut(s)	139, 302
HpyF10VI	GCNNNNNNNGC	3 cut(s)	37, 60, 308
HpyF3I	CTNAG	2 cut(s)	220, 367
Hsp92I	GRCGYC	1 cut(s)	230
Hsp92II	CATG	2 cut(s)	12, 228
HspAI	GCGC	1 cut(s)	52
Kpn2I	TCCGGA	1 cut(s)	45
Ksp22I	TGATCA	1 cut(s)	376
Kzo9I	GATC	1 cut(s)	376
LmnI	GCTCC	1 cut(s)	166
LpnPI	CCDG	7 cut(s)	59, 117, 166, 176, 230, 252, 290
Lsp1109I	GCAGC	3 cut(s)	18, 105, 151
LweI	GCATC	2 cut(s)	105, 289
MaeIII	GTNAC	1 cut(s)	270
MalI	GATC	1 cut(s)	378
MbiI	CCGCTC	1 cut(s)	60
MboI	GATC	1 cut(s)	376
MboII	GAAGA	2 cut(s)	186, 298
MluCI	AATT	1 cut(s)	73
MnlI	CCTC	5 cut(s)	34, 42, 91, 374, 390
Mph1103I	ATGCAT	1 cut(s)	304
MroI	TCCGGA	1 cut(s)	45
MspA1I	CMGCKG	1 cut(s)	31
MspI	CCGG	2 cut(s)	46, 104
Mva1269I	GAATGC	1 cut(s)	302
MwoI	GCNNNNNNNGC	3 cut(s)	37, 60, 308
NdeII	GATC	1 cut(s)	376
NlaIII	CATG	2 cut(s)	12, 228
NmuCI	GTSAC	1 cut(s)	270
NsiI	ATGCAT	1 cut(s)	304
NspV	TTCGAA	1 cut(s)	240
PaeR7I	CTCGAG	1 cut(s)	55
PctI	GAATGC	1 cut(s)	302
PflFI	GACNNNGTC	1 cut(s)	268
PkrI	GCNGC	5 cut(s)	30, 33, 62, 95, 141
PspXI	VCTCGAGB	1 cut(s)	55
PsyI	GACNNNGTC	1 cut(s)	268
RsaI	GTAC	1 cut(s)	372
RsaNI	GTAC	1 cut(s)	371
SatI	GCNGC	5 cut(s)	29, 32, 61, 94, 140
Sau3AI	GATC	1 cut(s)	376
ScaI	AGTACT	1 cut(s)	372
SetI	ASST	7 cut(s)	144, 185, 261, 343, 362, 366, 401
SfaNI	GCATC	2 cut(s)	105, 289
Sfr274I	CTCGAG	1 cut(s)	55
SfuI	TTCGAA	1 cut(s)	240
SlaI	CTCGAG	1 cut(s)	55
SmlI	CTYRAG	2 cut(s)	55, 143
SmoI	CTYRAG	2 cut(s)	55, 143
Sse9I	AATT	1 cut(s)	73
SsiI	CCGC	2 cut(s)	29, 60
TaaI	ACNGT	1 cut(s)	118
TaqI	TCGA	4 cut(s)	56, 123, 240, 285
TasI	AATT	1 cut(s)	73
TatI	WGTACW	1 cut(s)	370
TauI	GCSGC	2 cut(s)	31, 63
TseFI	GTSAC	1 cut(s)	270
TseI	GCWGC	3 cut(s)	31, 93, 139
Tsp45I	GTSAC	1 cut(s)	270
TspDTI	ATGAA	1 cut(s)	141
Tth111I	GACNNNGTC	1 cut(s)	268
XapI	RAATTY	1 cut(s)	73
XhoI	CTCGAG	1 cut(s)	55
ZrmI	AGTACT	1 cut(s)	372
Zsp2I	ATGCAT	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.