Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

6666873 .. 6668946

Gene Structure 2074 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGAAAAAACACATTATTGTATGGAAATCATTTCTTACTTCTGATCGCACTAGCATAGTCAAATCTGTTCTTATCAATTTATCTACGTATGTTACAAGAATATATTTTCCACTGGACGTAGCATCAACTCTACCATTTAATGTGATGTATAGAATTTTTACTGGCAATATGCACCATCAGCAAGTCTTTGGCTTCATCAATATGCTTCGTCTATGGCGTCTCAGGCGTGTTAGTGAACTCTTCAAAAGGCTAGAGAAAGACACACGCTTTAGCTACTTTTGGGTTCGATACATCAAACTAATTTGTGTTACACTGTTTGCAGTGCACTCATCAGGTTGCTTCTACTTCTGGATGGCAACCCATCACAAACAAGCAAATGATACATGGATTGGAAGCCAGATCAACGACTTCGAGCACAGAAGCATCTGGTTGTGTTACACGTATTCCATCTACTGGGCCACTGTCACTCTCACCACCGTTGGATATGGCGACTTGCATGCGGTCAACTTTGGGGAGAAGATTTTTAGCATCTTCTATATGCTTTTCAACATTGGCCTCTTTGCTTACTTGGTTGGAAACATGACCAATCTCGTCGTCCATAGCGCTGTTCGAACTTTATTCATGAGGGATGCCATCAATGAGATATTCAGATATGCAAGCAAAAACAGACTGCCAGAAGGCTTGAAAGAGCAAATGCTGGCTCACGTGCAGCTCAAGTTCAAGACCGCAGACCAGCATTTCCCACCATCTTTTCCGAAAAACCGTCGAGAAAACCTACCTGTTCAAGGGAGTCTCAGAACACCTAACTGTCCAATTGATTTCAGAGATGAAAGCAGAATACTTTCCCCCCAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009624 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ion_trans KHA cNMP_binding

Protein Analysis

286

Amino Acids

33.67

Weight (kDa)

9.8

Isoelectric Point (pI)

36.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ion_trans	PF00520	20 - 200	5.9e-27	Ion transport protein
Ion_trans_2	PF07885	145 - 198	7.3e-13	Ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	453
AciI	CCGC	2 cut(s)	500, 726
AcsI	RAATTY	1 cut(s)	153
AcvI	CACGTG	1 cut(s)	706
AcyI	GRCGYC	1 cut(s)	217
AfeI	AGCGCT	1 cut(s)	604
AfiI	CCNNNNNNNGG	2 cut(s)	453, 785
AflIII	ACRYGT	1 cut(s)	438
AgsI	TTSAA	5 cut(s)	244, 547, 685, 721, 785
AluBI	AGCT	2 cut(s)	273, 712
AluI	AGCT	2 cut(s)	273, 712
Alw21I	GWGCWC	2 cut(s)	327, 417
Alw26I	GTCTC	2 cut(s)	224, 797
Alw44I	GTGCAC	1 cut(s)	323
Aor51HI	AGCGCT	1 cut(s)	604
AoxI	GGCC	2 cut(s)	456, 553
ApaLI	GTGCAC	1 cut(s)	323
ApeKI	GCWGC	1 cut(s)	709
ApoI	RAATTY	1 cut(s)	153
Asp700I	GAANNNNTTC	1 cut(s)	841
AspLEI	GCGC	1 cut(s)	605
AspS9I	GGNCC	1 cut(s)	456
AsuHPI	GGTGA	1 cut(s)	463
AsuII	TTCGAA	1 cut(s)	610
BaeGI	GKGCMC	1 cut(s)	327
BbrPI	CACGTG	1 cut(s)	706
Bbv12I	GWGCWC	2 cut(s)	327, 417
BbvI	GCAGC	1 cut(s)	721
BccI	CCATC	6 cut(s)	183, 346, 369, 455, 641, 754
BcgI	CGANNNNNNTGC	2 cut(s)	479, 513
BcoDI	GTCTC	2 cut(s)	224, 797
BfaI	CTAG	2 cut(s)	51, 251
BfoI	RGCGCY	1 cut(s)	606
BisI	GCNGC	1 cut(s)	710
BlsI	GCNGC	1 cut(s)	711
BmgT120I	GGNCC	1 cut(s)	456
BmrI	ACTGGG	1 cut(s)	463
BmsI	GCATC	4 cut(s)	131, 432, 537, 619
BmuI	ACTGGG	1 cut(s)	463
Bpu14I	TTCGAA	1 cut(s)	610
BpuEI	CTTGAG	1 cut(s)	698
BsaAI	YACGTR	3 cut(s)	87, 441, 706
BsaHI	GRCGYC	1 cut(s)	217
Bsc4I	CCNNNNNNNGG	2 cut(s)	453, 785
Bse1I	ACTGG	3 cut(s)	117, 166, 458
BseGI	GGATG	2 cut(s)	357, 634
BseLI	CCNNNNNNNGG	2 cut(s)	453, 785
BseMII	CTCAG	2 cut(s)	235, 808
BseNI	ACTGG	3 cut(s)	117, 166, 458
BseSI	GKGCMC	1 cut(s)	327
BseXI	GCAGC	1 cut(s)	721
BsgI	GTGCAG	1 cut(s)	728
BshFI	GGCC	2 cut(s)	458, 555
BsiHKAI	GWGCWC	2 cut(s)	327, 417
BslI	CCNNNNNNNGG	2 cut(s)	453, 785
BsmAI	GTCTC	2 cut(s)	224, 797
BsmBI	CGTCTC	1 cut(s)	224
BsnI	GGCC	2 cut(s)	458, 555
Bsp119I	TTCGAA	1 cut(s)	610
Bsp1286I	GDGCHC	2 cut(s)	327, 417
Bsp143I	GATC	2 cut(s)	43, 399
BspACI	CCGC	2 cut(s)	500, 726
BspANI	GGCC	2 cut(s)	458, 555
BspCNI	CTCAG	2 cut(s)	234, 807
BspHI	TCATGA	1 cut(s)	621
BspT104I	TTCGAA	1 cut(s)	610
BsrI	ACTGG	3 cut(s)	117, 166, 458
BssMI	GATC	2 cut(s)	43, 399
BssNI	GRCGYC	1 cut(s)	217
Bst4CI	ACNGT	5 cut(s)	315, 463, 478, 764, 809
Bst6I	CTCTTC	1 cut(s)	245
BstACI	GRCGYC	1 cut(s)	217
BstBAI	YACGTR	3 cut(s)	87, 441, 706
BstBI	TTCGAA	1 cut(s)	610
BstC8I	GCNNGC	3 cut(s)	498, 658, 699
BstDEI	CTNAG	2 cut(s)	221, 794
BstENI	CCTNNNNNAGG	1 cut(s)	783
BstF5I	GGATG	2 cut(s)	357, 634
BstH2I	RGCGCY	1 cut(s)	606
BstHHI	GCGC	1 cut(s)	605
BstKTI	GATC	2 cut(s)	46, 402
BstMAI	GTCTC	2 cut(s)	224, 797
BstMBI	GATC	2 cut(s)	43, 399
BstMWI	GCNNNNNNNGC	2 cut(s)	178, 223
BstNSI	RCATGY	1 cut(s)	500
BstSLI	GKGCMC	1 cut(s)	327
BstSNI	TACGTA	1 cut(s)	87
BstV1I	GCAGC	1 cut(s)	721
BsuRI	GGCC	2 cut(s)	458, 555
BtsCI	GGATG	2 cut(s)	357, 634
BtsI	GCAGTG	1 cut(s)	327
BtsIMutI	CAGTG	4 cut(s)	110, 311, 327, 459
Cac8I	GCNNGC	3 cut(s)	498, 658, 699
CciI	TCATGA	1 cut(s)	621
CfoI	GCGC	1 cut(s)	605
Cfr13I	GGNCC	1 cut(s)	456
CseI	GACGC	1 cut(s)	206
CviAII	CATG	4 cut(s)	384, 497, 580, 622
CviJI	RGCY	9 cut(s)	192, 250, 273, 396, 458, 555, 681, 701, 712
CviKI_1	RGCY	9 cut(s)	192, 250, 273, 396, 458, 555, 681, 701, 712
DdeI	CTNAG	2 cut(s)	221, 794
DpnI	GATC	2 cut(s)	45, 401
DpnII	GATC	2 cut(s)	43, 399
Eam1104I	CTCTTC	1 cut(s)	245
EarI	CTCTTC	1 cut(s)	245
Eco105I	TACGTA	1 cut(s)	87
Eco47III	AGCGCT	1 cut(s)	604
Eco72I	CACGTG	1 cut(s)	706
EcoNI	CCTNNNNNAGG	1 cut(s)	783
Esp3I	CGTCTC	1 cut(s)	224
FaeI	CATG	4 cut(s)	387, 500, 583, 625
FatI	CATG	4 cut(s)	383, 496, 579, 621
Fnu4HI	GCNGC	1 cut(s)	710
FokI	GGATG	2 cut(s)	364, 641
Fsp4HI	GCNGC	1 cut(s)	710
FspBI	CTAG	2 cut(s)	51, 251
GlaI	GCGC	1 cut(s)	604
GluI	GCNGC	1 cut(s)	710
HaeII	RGCGCY	1 cut(s)	606
HaeIII	GGCC	2 cut(s)	458, 555
HgaI	GACGC	1 cut(s)	206
HhaI	GCGC	1 cut(s)	605
Hin1I	GRCGYC	1 cut(s)	217
Hin1II	CATG	4 cut(s)	387, 500, 583, 625
Hin6I	GCGC	1 cut(s)	603
HinP1I	GCGC	1 cut(s)	603
HincII	GTYRAC	1 cut(s)	505
HindII	GTYRAC	1 cut(s)	505
HinfI	GANTC	1 cut(s)	790
HphI	GGTGA	1 cut(s)	463
Hpy166II	GTNNAC	3 cut(s)	236, 325, 505
Hpy188I	TCNGA	5 cut(s)	43, 650, 756, 797, 824
Hpy188III	TCNNGA	4 cut(s)	349, 622, 721, 767
Hpy8I	GTNNAC	3 cut(s)	236, 325, 505
Hpy99I	CGWCG	2 cut(s)	596, 768
HpyAV	CCTTC	1 cut(s)	671
HpyCH4III	ACNGT	5 cut(s)	315, 463, 478, 764, 809
HpyCH4IV	ACGT	4 cut(s)	86, 117, 440, 705
HpyCH4V	TGCA	6 cut(s)	172, 320, 325, 496, 656, 709
HpyF10VI	GCNNNNNNNGC	2 cut(s)	178, 223
HpyF3I	CTNAG	2 cut(s)	221, 794
HpySE526I	ACGT	4 cut(s)	86, 117, 440, 705
Hsp92I	GRCGYC	1 cut(s)	217
Hsp92II	CATG	4 cut(s)	387, 500, 583, 625
HspAI	GCGC	1 cut(s)	603
Kzo9I	GATC	2 cut(s)	43, 399
Lsp1109I	GCAGC	1 cut(s)	721
LweI	GCATC	4 cut(s)	131, 432, 537, 619
MaeI	CTAG	2 cut(s)	51, 251
MaeII	ACGT	4 cut(s)	86, 117, 440, 705
MaeIII	GTNAC	4 cut(s)	91, 307, 434, 463
MalI	GATC	2 cut(s)	45, 401
MboI	GATC	2 cut(s)	43, 399
MboII	GAAGA	3 cut(s)	232, 523, 529
MfeI	CAATTG	1 cut(s)	813
MhlI	GDGCHC	2 cut(s)	327, 417
MluCI	AATT	4 cut(s)	76, 153, 300, 813
MlyI	GAGTC	1 cut(s)	799
MmeI	TCCRAC	2 cut(s)	460, 553
MnlI	CCTC	2 cut(s)	566, 618
MroXI	GAANNNNTTC	1 cut(s)	841
MseI	TTAA	1 cut(s)	138
MslI	CAYNNNNRTG	1 cut(s)	200
MunI	CAATTG	1 cut(s)	813
MwoI	GCNNNNNNNGC	2 cut(s)	178, 223
NdeII	GATC	2 cut(s)	43, 399
NlaIII	CATG	4 cut(s)	387, 500, 583, 625
NmuCI	GTSAC	1 cut(s)	463
NspI	RCATGY	1 cut(s)	500
NspV	TTCGAA	1 cut(s)	610
PaeI	GCATGC	1 cut(s)	500
PagI	TCATGA	1 cut(s)	621
PcsI	WCGNNNNNNNCGW	1 cut(s)	214
PdmI	GAANNNNTTC	1 cut(s)	841
PflMI	CCANNNNNTGG	1 cut(s)	453
PkrI	GCNGC	1 cut(s)	711
PleI	GAGTC	1 cut(s)	798
PmaCI	CACGTG	1 cut(s)	706
PmlI	CACGTG	1 cut(s)	706
PpsI	GAGTC	1 cut(s)	798
Ppu21I	YACGTR	3 cut(s)	87, 441, 706
PspCI	CACGTG	1 cut(s)	706
PspPI	GGNCC	1 cut(s)	456
RseI	CAYNNNNRTG	1 cut(s)	200
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	1 cut(s)	710
Sau3AI	GATC	2 cut(s)	43, 399
Sau96I	GGNCC	1 cut(s)	456
SchI	GAGTC	1 cut(s)	799
SduI	GDGCHC	2 cut(s)	327, 417
SfaNI	GCATC	4 cut(s)	131, 432, 537, 619
SfuI	TTCGAA	1 cut(s)	610
SmiMI	CAYNNNNRTG	1 cut(s)	200
SmlI	CTYRAG	1 cut(s)	713
SmoI	CTYRAG	1 cut(s)	713
SnaBI	TACGTA	1 cut(s)	87
SphI	GCATGC	1 cut(s)	500
Sse9I	AATT	4 cut(s)	76, 153, 300, 813
SsiI	CCGC	2 cut(s)	500, 726
SspMI	CTAG	2 cut(s)	51, 251
TaaI	ACNGT	5 cut(s)	315, 463, 478, 764, 809
TaiI	ACGT	4 cut(s)	89, 120, 443, 708
TaqI	TCGA	4 cut(s)	286, 411, 610, 766
TasI	AATT	4 cut(s)	76, 153, 300, 813
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TscAI	CASTG	4 cut(s)	117, 318, 327, 466
TseFI	GTSAC	1 cut(s)	463
TseI	GCWGC	1 cut(s)	709
Tsp45I	GTSAC	1 cut(s)	463
TspDTI	ATGAA	4 cut(s)	17, 184, 610, 843
TspRI	CASTG	4 cut(s)	117, 318, 327, 466
Van91I	CCANNNNNTGG	1 cut(s)	453
VneI	GTGCAC	1 cut(s)	323
XagI	CCTNNNNNAGG	1 cut(s)	783
XapI	RAATTY	1 cut(s)	153
XceI	RCATGY	1 cut(s)	500
XmnI	GAANNNNTTC	1 cut(s)	841
XspI	CTAG	2 cut(s)	51, 251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.