Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

6712399 .. 6714802

Gene Structure 2404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGCGAGGAATTTAGGTGTTTTGGTGCGACAGGTGCGAGGCAATGGCGACAAGCCCTGCGCAGGTCTTCTTCTTCATCATCTTAAGCTTCCTTGTCATTCTATCCAAACCCTAATATCCCTAAAAACCCTAACTTCAATTCCAACCGCACCATCTTTACCGCCCACAGCTCCTTCCACTCCCAAACCATTATACGATTCCCTGCACTCCACAAACCTTCAGTTTTTTCAGCACCGAACTCTCACTTCAGCCTCAGGTCCCTCGGACATTCAGATCAAGAAAAAACGAAAAAAACGTCCCTCGAACATTGTTACCGTGAAGACTAGGAACCAGTATTATCCGGCGCTGTGCAAAGTTCGAAGCAAAAAAGCGCCAGTAGTTTTCTTCTTCACTACAGCCTGCTCTGATGCTTGCCCACTCATAACTCCAGTCCTTCAAGACCTGAGTGAGCAATTCCCACATGTAACAATATATAAGTTTGATGTTTTCGGGGGAAAAATTGCCAAAGCATTGTCTTTGTACGTTGTCCCTGCTTTGCCCACATTTTTTTTCTATAAAGATGGTGGAAGGGAGTCTCGGATTATTGGTGCTGATGTGGCCGGATTGAAAAATACTTTTGAAAAACTCTACAGTCTGGAGGGATCGCAAGATGGTGATTTGGGTGAGGCCATGCCATCCGAAAATCTTCACATGGGAAAGAGAGAACAACTCCAGAACTTGACTAGCAAGTTAGGAAATGTGAAATCGTCACGACAGAGTGATGGTCTTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0031974 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

258

Amino Acids

28.27

Weight (kDa)

9.76

Isoelectric Point (pI)

50.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	114 - 204	1.7e-07	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	61
Acc36I	ACCTGC	1 cut(s)	53
AciI	CCGC	2 cut(s)	147, 161
AclWI	GGATC	1 cut(s)	649
AcoI	YGGCCR	1 cut(s)	597
AcsI	RAATTY	1 cut(s)	10
AcuI	CTGAAG	2 cut(s)	203, 231
AfaI	GTAC	1 cut(s)	521
AfiI	CCNNNNNNNGG	1 cut(s)	62
AflII	CTTAAG	1 cut(s)	83
AflIII	ACRYGT	1 cut(s)	460
AgsI	TTSAA	4 cut(s)	138, 437, 607, 620
AluBI	AGCT	2 cut(s)	88, 170
AluI	AGCT	2 cut(s)	88, 170
Alw26I	GTCTC	1 cut(s)	579
AlwI	GGATC	1 cut(s)	649
AoxI	GGCC	2 cut(s)	597, 666
ApoI	RAATTY	1 cut(s)	10
ArsI	GACNNNNNNTTYG	2 cut(s)	280, 312
Asp700I	GAANNNNTTC	1 cut(s)	684
AspLEI	GCGC	3 cut(s)	62, 346, 373
AspS9I	GGNCC	1 cut(s)	257
AsuHPI	GGTGA	2 cut(s)	665, 674
AsuII	TTCGAA	1 cut(s)	358
AvaII	GGWCC	1 cut(s)	257
AxyI	CCTNAGG	1 cut(s)	253
BbsI	GAAGAC	2 cut(s)	59, 326
BccI	CCATC	5 cut(s)	160, 554, 644, 682, 755
BcoDI	GTCTC	1 cut(s)	579
BfaI	CTAG	2 cut(s)	324, 723
BfmI	CTRYAG	2 cut(s)	393, 628
BfoI	RGCGCY	2 cut(s)	347, 374
BfrI	CTTAAG	1 cut(s)	83
BfuAI	ACCTGC	1 cut(s)	53
Bme18I	GGWCC	1 cut(s)	257
BmgT120I	GGNCC	1 cut(s)	257
BmiI	GGNNCC	2 cut(s)	259, 329
BmsI	GCATC	1 cut(s)	397
BpiI	GAAGAC	2 cut(s)	59, 326
BplI	GAGNNNNNCTC	2 cut(s)	693, 725
BpmI	CTGGAG	3 cut(s)	411, 656, 695
Bpu14I	TTCGAA	1 cut(s)	358
BsaJI	CCNNGG	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	1 cut(s)	62
Bse1I	ACTGG	3 cut(s)	331, 374, 428
Bse21I	CCTNAGG	1 cut(s)	253
Bse3DI	GCAATG	1 cut(s)	49
BseDI	CCNNGG	1 cut(s)	261
BseGI	GGATG	1 cut(s)	674
BseLI	CCNNNNNNNGG	1 cut(s)	62
BseMI	GCAATG	1 cut(s)	49
BseMII	CTCAG	2 cut(s)	267, 434
BseNI	ACTGG	3 cut(s)	331, 374, 428
BsgI	GTGCAG	1 cut(s)	188
BshFI	GGCC	2 cut(s)	599, 668
BsiSI	CCGG	2 cut(s)	341, 600
BslFI	GGGAC	3 cut(s)	243, 282, 512
BslI	CCNNNNNNNGG	1 cut(s)	62
BsmAI	GTCTC	1 cut(s)	579
BsmFI	GGGAC	3 cut(s)	243, 282, 512
BsnI	GGCC	2 cut(s)	599, 668
Bsp119I	TTCGAA	1 cut(s)	358
Bsp143I	GATC	2 cut(s)	273, 641
BspACI	CCGC	2 cut(s)	147, 161
BspANI	GGCC	2 cut(s)	599, 668
BspCNI	CTCAG	2 cut(s)	266, 435
BspLI	GGNNCC	2 cut(s)	259, 329
BspMI	ACCTGC	1 cut(s)	53
BspPI	GGATC	1 cut(s)	649
BspT104I	TTCGAA	1 cut(s)	358
BspTI	CTTAAG	1 cut(s)	83
BsrDI	GCAATG	1 cut(s)	49
BsrI	ACTGG	3 cut(s)	331, 374, 428
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	2 cut(s)	273, 641
Bst4CI	ACNGT	2 cut(s)	316, 632
BstAFI	CTTAAG	1 cut(s)	83
BstBI	TTCGAA	1 cut(s)	358
BstC8I	GCNNGC	2 cut(s)	400, 412
BstDEI	CTNAG	2 cut(s)	253, 443
BstF5I	GGATG	1 cut(s)	674
BstH2I	RGCGCY	2 cut(s)	347, 374
BstHHI	GCGC	3 cut(s)	62, 346, 373
BstKTI	GATC	2 cut(s)	276, 644
BstMAI	GTCTC	1 cut(s)	579
BstMBI	GATC	2 cut(s)	273, 641
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 596
BstNSI	RCATGY	1 cut(s)	464
BstSFI	CTRYAG	2 cut(s)	393, 628
BstV2I	GAAGAC	2 cut(s)	59, 326
Bsu36I	CCTNAGG	1 cut(s)	253
BsuRI	GGCC	2 cut(s)	599, 668
BtsCI	GGATG	1 cut(s)	674
BveI	ACCTGC	1 cut(s)	53
Cac8I	GCNNGC	2 cut(s)	400, 412
CfoI	GCGC	3 cut(s)	62, 346, 373
Cfr13I	GGNCC	1 cut(s)	257
Csp6I	GTAC	1 cut(s)	520
CviAII	CATG	3 cut(s)	461, 670, 691
CviJI	RGCY	7 cut(s)	55, 88, 170, 251, 398, 599, 668
CviKI_1	RGCY	7 cut(s)	55, 88, 170, 251, 398, 599, 668
CviQI	GTAC	1 cut(s)	520
DdeI	CTNAG	2 cut(s)	253, 443
DpnI	GATC	2 cut(s)	275, 643
DpnII	GATC	2 cut(s)	273, 641
EaeI	YGGCCR	1 cut(s)	597
Eco47I	GGWCC	1 cut(s)	257
Eco57I	CTGAAG	2 cut(s)	203, 231
Eco81I	CCTNAGG	1 cut(s)	253
EcoO109I	RGGNCCY	1 cut(s)	257
FaeI	CATG	3 cut(s)	464, 673, 694
FaiI	YATR	8 cut(s)	193, 422, 462, 472, 474, 555, 671, 692
FaqI	GGGAC	3 cut(s)	243, 282, 512
FatI	CATG	3 cut(s)	460, 669, 690
FokI	GGATG	1 cut(s)	661
FspBI	CTAG	2 cut(s)	324, 723
FspI	TGCGCA	1 cut(s)	61
GlaI	GCGC	3 cut(s)	61, 345, 372
GsuI	CTGGAG	3 cut(s)	411, 656, 695
HaeII	RGCGCY	2 cut(s)	347, 374
HaeIII	GGCC	2 cut(s)	599, 668
HapII	CCGG	2 cut(s)	341, 600
HhaI	GCGC	3 cut(s)	62, 346, 373
Hin1II	CATG	3 cut(s)	464, 673, 694
Hin6I	GCGC	3 cut(s)	60, 344, 371
HinP1I	GCGC	3 cut(s)	60, 344, 371
HindIII	AAGCTT	1 cut(s)	86
HinfI	GANTC	2 cut(s)	197, 572
HpaII	CCGG	2 cut(s)	341, 600
HphI	GGTGA	2 cut(s)	665, 674
Hpy188I	TCNGA	5 cut(s)	265, 273, 406, 579, 679
Hpy188III	TCNNGA	5 cut(s)	277, 437, 635, 712, 750
HpyAV	CCTTC	4 cut(s)	183, 227, 443, 561
HpyCH4III	ACNGT	2 cut(s)	316, 632
HpyCH4IV	ACGT	2 cut(s)	295, 522
HpyCH4V	TGCA	2 cut(s)	205, 351
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 596
HpyF3I	CTNAG	2 cut(s)	253, 443
HpySE526I	ACGT	2 cut(s)	295, 522
Hsp92II	CATG	3 cut(s)	464, 673, 694
HspAI	GCGC	3 cut(s)	60, 344, 371
Kzo9I	GATC	2 cut(s)	273, 641
LmnI	GCTCC	1 cut(s)	175
LweI	GCATC	1 cut(s)	397
MaeI	CTAG	2 cut(s)	324, 723
MaeII	ACGT	2 cut(s)	295, 522
MaeIII	GTNAC	3 cut(s)	310, 463, 747
MalI	GATC	2 cut(s)	275, 643
MboI	GATC	2 cut(s)	273, 641
MboII	GAAGA	7 cut(s)	59, 62, 65, 331, 376, 379, 677
MluCI	AATT	4 cut(s)	10, 138, 452, 498
MlyI	GAGTC	1 cut(s)	581
MmeI	TCCRAC	1 cut(s)	167
MnlI	CCTC	6 cut(s)	32, 262, 271, 310, 631, 658
MroXI	GAANNNNTTC	1 cut(s)	684
MseI	TTAA	1 cut(s)	84
MspCI	CTTAAG	1 cut(s)	83
MspI	CCGG	2 cut(s)	341, 600
MwoI	GCNNNNNNNGC	2 cut(s)	34, 596
NdeII	GATC	2 cut(s)	273, 641
NlaIII	CATG	3 cut(s)	464, 673, 694
NlaIV	GGNNCC	2 cut(s)	259, 329
NmuCI	GTSAC	1 cut(s)	747
NsbI	TGCGCA	1 cut(s)	61
NspI	RCATGY	1 cut(s)	464
NspV	TTCGAA	1 cut(s)	358
PciI	ACATGT	1 cut(s)	460
PcsI	WCGNNNNNNNCGW	1 cut(s)	292
PdmI	GAANNNNTTC	1 cut(s)	684
PfeI	GAWTC	1 cut(s)	197
PleI	GAGTC	1 cut(s)	580
PpsI	GAGTC	1 cut(s)	580
PpuMI	RGGWCCY	1 cut(s)	257
PscI	ACATGT	1 cut(s)	460
Psp5II	RGGWCCY	1 cut(s)	257
PspN4I	GGNNCC	2 cut(s)	259, 329
PspPI	GGNCC	1 cut(s)	257
PspPPI	RGGWCCY	1 cut(s)	257
RsaI	GTAC	1 cut(s)	521
RsaNI	GTAC	1 cut(s)	520
SaqAI	TTAA	1 cut(s)	84
Sau3AI	GATC	2 cut(s)	273, 641
Sau96I	GGNCC	1 cut(s)	257
SchI	GAGTC	1 cut(s)	581
SfaNI	GCATC	1 cut(s)	397
SfcI	CTRYAG	2 cut(s)	393, 628
SfuI	TTCGAA	1 cut(s)	358
SinI	GGWCC	1 cut(s)	257
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
Sse9I	AATT	4 cut(s)	10, 138, 452, 498
SsiI	CCGC	2 cut(s)	147, 161
SspMI	CTAG	2 cut(s)	324, 723
TaaI	ACNGT	2 cut(s)	316, 632
TaiI	ACGT	2 cut(s)	298, 525
TaqI	TCGA	2 cut(s)	302, 358
TasI	AATT	4 cut(s)	10, 138, 452, 498
TfiI	GAWTC	1 cut(s)	197
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TseFI	GTSAC	1 cut(s)	747
Tsp45I	GTSAC	1 cut(s)	747
TspDTI	ATGAA	1 cut(s)	65
Vha464I	CTTAAG	1 cut(s)	83
VpaK11BI	GGWCC	1 cut(s)	257
XapI	RAATTY	1 cut(s)	10
XceI	RCATGY	1 cut(s)	464
XmnI	GAANNNNTTC	1 cut(s)	684
XspI	CTAG	2 cut(s)	324, 723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.