pycom15g10270

cell redox homeostasis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Reverse (-)
6716142 .. 6720439
4298 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1101 bp
ATGAAAATGCCGGGGAATTCAGGGGTTCTGGTCCGAGAGTTGCTTGGCTATGGCCGCAGCAAGCACTGTGCAGGTCTTGTTCATCATCATCTTATGCTACTCTCCTCTAATTCGATCCAAAGGCAAGCGTTCAAAACACTAACCCTTAACCTAACGTCAATTCCAACCACACCATCTTCTTCACCGCACATATTTCTTTCCACTTCCATTCACTCCCTAAGCCTTGAGAAATTTCGGCAACAGCGACGTCTCTTCTCGTCCTCCTCATCCTCAGGCCCCTCAAACGTTATCCTCCTCGATATGTACGATGATTTTTATTTTCAACTTAATACTGTCGATGAGGAATCTTTGTCAGCAGTTTTCTACTTCACTACAGATGACAAGTCCGAGTCCAACAATTTTGTAATTCCAATCCTCATAGGGCTGGGTGAGCAATTCCCACATGTTAGAATATATAAGATGTTTACAGAGGAAGGGCAAAGCACATTGGGCCCATTTGATGTCAGCGCTGCGCCAATCTTCTTTTTCCTTCGAAAAGGAGTGAAGGTAGCTGAGATTGTCGGAGTTGATATTGCACGGCTGAAAGAGACATTTGGAAAGCTCTACAGTCAGGAGGAATCTCAAGATGGTGGGGCTGCTCGAGATATGAAATGTTCATCTGGAAGAAGCAAAAGGGCAGCAACTCGAGCTAGGAAAGATGATAAAGATTCTTCAAGGATTGCTCTCATCAAATCAAATGCTCAATTTCATAAGTTACTTCGCAAAGTTAAAGTTGAATCTCTGCCAGCAGTATTTTTCTTCAGTATAGCCTACGATGATTCTTGTGCAAGGATAGCTCCAAGCGTTCGAGAGTTGAGCGAACGATTCCCACATGTAACGGTTAATAAGATTGGGCTGAAGGAAGTTGATAGCTCAGTACGCAAGTTCAATGTCCGCTATTTGCCAACGTTTATTTTCTTCCAAAATGGGAAGAAGGTATGTGAAATTATTGGTGCTGAAGTCGCACAGCTGAAAGACAGATTTACAAAATACTATAGTCATGATAGCGGTGATTTGGATGATAAAGATAAGAAAGGCAAGGAATTGTTGCTGGCGGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04621 ko05418 map04621 map05418
Pfam Domains
Protein Families
TPR_1 TPR_11 TPR_16 Thioredoxin

Protein Analysis

367

Amino Acids

41.07

Weight (kDa)

9.29

Isoelectric Point (pI)

46.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thioredoxin PF00085 245 - 338 1.2e-10 Thioredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 250
Acc36I ACCTGC 1 cut(s) 62
AciI CCGC 5 cut(s) 55, 185, 934, 1047, 1094
AclI AACGTT 2 cut(s) 285, 947
AclWI GGATC 1 cut(s) 109
AcoI YGGCCR 1 cut(s) 52
AcsI RAATTY 2 cut(s) 16, 230
AcuI CTGAAG 3 cut(s) 784, 917, 1017
AcyI GRCGYC 1 cut(s) 247
AfaI GTAC 2 cut(s) 305, 918
AfeI AGCGCT 1 cut(s) 508
AflIII ACRYGT 2 cut(s) 442, 871
AgsI TTSAA 5 cut(s) 133, 323, 714, 776, 928
AluBI AGCT 6 cut(s) 551, 601, 689, 836, 912, 1009
AluI AGCT 6 cut(s) 551, 601, 689, 836, 912, 1009
Alw26I GTCTC 2 cut(s) 254, 581
AlwI GGATC 1 cut(s) 109
Ama87I CYCGRG 2 cut(s) 639, 684
Aor51HI AGCGCT 1 cut(s) 508
AoxI GGCC 3 cut(s) 52, 274, 490
ApaI GGGCCC 1 cut(s) 494
ApeKI GCWGC 4 cut(s) 57, 509, 635, 677
ApoI RAATTY 2 cut(s) 16, 230
AspLEI GCGC 2 cut(s) 509, 514
AspS9I GGNCC 4 cut(s) 31, 275, 490, 491
AsuC2I CCSGG 1 cut(s) 12
AsuHPI GGTGA 3 cut(s) 174, 440, 1061
AsuII TTCGAA 1 cut(s) 532
AvaI CYCGRG 2 cut(s) 639, 684
AvaII GGWCC 1 cut(s) 31
AxyI CCTNAGG 1 cut(s) 271
BaeGI GKGCMC 1 cut(s) 494
BanII GRGCYC 1 cut(s) 494
BbvI GCAGC 4 cut(s) 69, 496, 622, 689
BccI CCATC 2 cut(s) 181, 620
BceAI ACGGC 1 cut(s) 593
BcnI CCSGG 1 cut(s) 12
BcoDI GTCTC 2 cut(s) 254, 581
BfaI CTAG 1 cut(s) 690
BfmI CTRYAG 3 cut(s) 372, 604, 1033
BfoI RGCGCY 1 cut(s) 510
BfuAI ACCTGC 1 cut(s) 62
BisI GCNGC 5 cut(s) 55, 58, 510, 636, 678
BlsI GCNGC 5 cut(s) 56, 59, 511, 637, 679
Bme1390I CCNGG 1 cut(s) 12
Bme18I GGWCC 1 cut(s) 31
BmeT110I CYCGRG 2 cut(s) 639, 684
BmgT120I GGNCC 4 cut(s) 31, 275, 490, 491
BmiI GGNNCC 2 cut(s) 277, 492
BmrFI CCNGG 1 cut(s) 12
Bpu10I CCTNAGC 1 cut(s) 218
Bpu14I TTCGAA 1 cut(s) 532
BpuEI CTTGAG 2 cut(s) 245, 606
BpuMI CCSGG 1 cut(s) 12
BsaHI GRCGYC 1 cut(s) 247
BsaJI CCNNGG 1 cut(s) 11
BsaXI ACNNNNNCTCC 2 cut(s) 531, 561
Bse21I CCTNAGG 1 cut(s) 271
BseDI CCNNGG 1 cut(s) 11
BseGI GGATG 2 cut(s) 266, 1063
BseMII CTCAG 3 cut(s) 285, 543, 927
BseRI GAGGAG 3 cut(s) 94, 253, 284
BseSI GKGCMC 1 cut(s) 494
BseXI GCAGC 4 cut(s) 69, 496, 622, 689
BseYI CCCAGC 1 cut(s) 424
BsgI GTGCAG 1 cut(s) 90
BshFI GGCC 3 cut(s) 54, 276, 492
BsiHKCI CYCGRG 2 cut(s) 639, 684
BsiSI CCGG 1 cut(s) 11
BsmAI GTCTC 2 cut(s) 254, 581
BsmBI CGTCTC 1 cut(s) 254
BsnI GGCC 3 cut(s) 54, 276, 492
BsoBI CYCGRG 2 cut(s) 639, 684
Bsp119I TTCGAA 1 cut(s) 532
Bsp120I GGGCCC 1 cut(s) 490
Bsp1286I GDGCHC 1 cut(s) 494
Bsp143I GATC 1 cut(s) 114
BspACI CCGC 5 cut(s) 55, 185, 934, 1047, 1094
BspANI GGCC 3 cut(s) 54, 276, 492
BspCNI CTCAG 3 cut(s) 284, 544, 926
BspHI TCATGA 1 cut(s) 1039
BspLI GGNNCC 2 cut(s) 277, 492
BspMI ACCTGC 1 cut(s) 62
BspPI GGATC 1 cut(s) 109
BspT104I TTCGAA 1 cut(s) 532
BssECI CCNNGG 1 cut(s) 11
BssMI GATC 1 cut(s) 114
BssNI GRCGYC 1 cut(s) 247
Bst4CI ACNGT 4 cut(s) 68, 334, 608, 880
Bst6I CTCTTC 1 cut(s) 257
BstACI GRCGYC 1 cut(s) 247
BstBI TTCGAA 1 cut(s) 532
BstC8I GCNNGC 4 cut(s) 62, 126, 786, 1092
BstDEI CTNAG 4 cut(s) 218, 271, 552, 913
BstF5I GGATG 2 cut(s) 266, 1063
BstH2I RGCGCY 1 cut(s) 510
BstHHI GCGC 2 cut(s) 509, 514
BstKTI GATC 1 cut(s) 117
BstMAI GTCTC 2 cut(s) 254, 581
BstMBI GATC 1 cut(s) 114
BstMWI GCNNNNNNNGC 7 cut(s) 54, 430, 489, 686, 833, 918, 1001
BstNSI RCATGY 2 cut(s) 446, 875
BstSCI CCNGG 1 cut(s) 10
BstSFI CTRYAG 3 cut(s) 372, 604, 1033
BstSLI GKGCMC 1 cut(s) 494
BstV1I GCAGC 4 cut(s) 69, 496, 622, 689
Bsu36I CCTNAGG 1 cut(s) 271
BsuRI GGCC 3 cut(s) 54, 276, 492
BtsCI GGATG 2 cut(s) 266, 1063
BtsIMutI CAGTG 1 cut(s) 64
BveI ACCTGC 1 cut(s) 62
Cac8I GCNNGC 4 cut(s) 62, 126, 786, 1092
CciI TCATGA 1 cut(s) 1039
CfoI GCGC 2 cut(s) 509, 514
Cfr13I GGNCC 4 cut(s) 31, 275, 490, 491
Csp6I GTAC 2 cut(s) 304, 917
CviAII CATG 3 cut(s) 443, 872, 1040
CviQI GTAC 2 cut(s) 304, 917
DdeI CTNAG 4 cut(s) 218, 271, 552, 913
DpnI GATC 1 cut(s) 116
DpnII GATC 1 cut(s) 114
EaeI YGGCCR 1 cut(s) 52
Eam1104I CTCTTC 1 cut(s) 257
EarI CTCTTC 1 cut(s) 257
Eco24I GRGCYC 1 cut(s) 494
Eco47I GGWCC 1 cut(s) 31
Eco47III AGCGCT 1 cut(s) 508
Eco57I CTGAAG 3 cut(s) 784, 917, 1017
Eco81I CCTNAGG 1 cut(s) 271
Eco88I CYCGRG 2 cut(s) 639, 684
EcoO109I RGGNCCY 1 cut(s) 275
EcoRI GAATTC 1 cut(s) 16
EcoT38I GRGCYC 1 cut(s) 494
Esp3I CGTCTC 1 cut(s) 254
FaeI CATG 3 cut(s) 446, 875, 1043
FatI CATG 3 cut(s) 442, 871, 1039
FauI CCCGC 1 cut(s) 1087
Fnu4HI GCNGC 5 cut(s) 55, 58, 510, 636, 678
FokI GGATG 2 cut(s) 253, 1070
FriOI GRGCYC 1 cut(s) 494
Fsp4HI GCNGC 5 cut(s) 55, 58, 510, 636, 678
FspBI CTAG 1 cut(s) 690
GlaI GCGC 2 cut(s) 508, 513
GluI GCNGC 5 cut(s) 55, 58, 510, 636, 678
GsaI CCCAGC 1 cut(s) 428
HaeII RGCGCY 1 cut(s) 510
HaeIII GGCC 3 cut(s) 54, 276, 492
HapII CCGG 1 cut(s) 11
HhaI GCGC 2 cut(s) 509, 514
Hin1I GRCGYC 1 cut(s) 247
Hin1II CATG 3 cut(s) 446, 875, 1043
Hin6I GCGC 2 cut(s) 507, 512
HinP1I GCGC 2 cut(s) 507, 512
HinfI GANTC 7 cut(s) 344, 389, 617, 707, 776, 818, 864
HpaII CCGG 1 cut(s) 11
HphI GGTGA 3 cut(s) 174, 440, 1061
Hpy166II GTNNAC 1 cut(s) 465
Hpy188I TCNGA 3 cut(s) 35, 388, 563
Hpy188III TCNNGA 6 cut(s) 611, 623, 641, 660, 848, 1040
Hpy8I GTNNAC 1 cut(s) 465
Hpy99I CGWCG 1 cut(s) 249
HpyAV CCTTC 5 cut(s) 467, 538, 539, 892, 967
HpyCH4III ACNGT 4 cut(s) 68, 334, 608, 880
HpyCH4IV ACGT 4 cut(s) 155, 247, 285, 947
HpyCH4V TGCA 3 cut(s) 71, 575, 827
HpyF10VI GCNNNNNNNGC 7 cut(s) 54, 430, 489, 686, 833, 918, 1001
HpyF3I CTNAG 4 cut(s) 218, 271, 552, 913
HpySE526I ACGT 4 cut(s) 155, 247, 285, 947
Hsp92I GRCGYC 1 cut(s) 247
Hsp92II CATG 3 cut(s) 446, 875, 1043
HspAI GCGC 2 cut(s) 507, 512
Kzo9I GATC 1 cut(s) 114
LmnI GCTCC 1 cut(s) 841
Lsp1109I GCAGC 4 cut(s) 69, 496, 622, 689
MaeI CTAG 1 cut(s) 690
MaeII ACGT 4 cut(s) 155, 247, 285, 947
MaeIII GTNAC 2 cut(s) 753, 874
MalI GATC 1 cut(s) 116
MboI GATC 1 cut(s) 114
MboII GAAGA 9 cut(s) 168, 171, 244, 511, 675, 702, 790, 949, 982
MhlI GDGCHC 1 cut(s) 494
MlyI GAGTC 1 cut(s) 398
MmeI TCCRAC 3 cut(s) 188, 417, 541
MseI TTAA 4 cut(s) 147, 327, 768, 882
MspA1I CMGCKG 1 cut(s) 1009
MspI CCGG 1 cut(s) 11
MspR9I CCNGG 1 cut(s) 12
MteI GCGCNGCGC 1 cut(s) 510
MwoI GCNNNNNNNGC 7 cut(s) 54, 430, 489, 686, 833, 918, 1001
NciI CCSGG 1 cut(s) 12
NdeII GATC 1 cut(s) 114
NlaIII CATG 3 cut(s) 446, 875, 1043
NlaIV GGNNCC 2 cut(s) 277, 492
NspI RCATGY 2 cut(s) 446, 875
NspV TTCGAA 1 cut(s) 532
PaeR7I CTCGAG 2 cut(s) 639, 684
PagI TCATGA 1 cut(s) 1039
PciI ACATGT 2 cut(s) 442, 871
PcsI WCGNNNNNNNCGW 2 cut(s) 241, 303
PfeI GAWTC 6 cut(s) 344, 617, 707, 776, 818, 864
PkrI GCNGC 5 cut(s) 56, 59, 511, 637, 679
PleI GAGTC 1 cut(s) 397
PpsI GAGTC 1 cut(s) 397
PscI ACATGT 2 cut(s) 442, 871
Psp1406I AACGTT 2 cut(s) 285, 947
PspFI CCCAGC 1 cut(s) 424
PspN4I GGNNCC 2 cut(s) 277, 492
PspOMI GGGCCC 1 cut(s) 490
PspPI GGNCC 4 cut(s) 31, 275, 490, 491
PspXI VCTCGAGB 1 cut(s) 684
PvuII CAGCTG 1 cut(s) 1009
RsaI GTAC 2 cut(s) 305, 918
RsaNI GTAC 2 cut(s) 304, 917
SaqAI TTAA 4 cut(s) 147, 327, 768, 882
SatI GCNGC 5 cut(s) 55, 58, 510, 636, 678
Sau3AI GATC 1 cut(s) 114
Sau96I GGNCC 4 cut(s) 31, 275, 490, 491
SchI GAGTC 1 cut(s) 398
ScrFI CCNGG 1 cut(s) 12
SduI GDGCHC 1 cut(s) 494
SfcI CTRYAG 3 cut(s) 372, 604, 1033
Sfr274I CTCGAG 2 cut(s) 639, 684
SfuI TTCGAA 1 cut(s) 532
SinI GGWCC 1 cut(s) 31
SlaI CTCGAG 2 cut(s) 639, 684
SmlI CTYRAG 4 cut(s) 224, 621, 639, 684
SmoI CTYRAG 4 cut(s) 224, 621, 639, 684
SsiI CCGC 5 cut(s) 55, 185, 934, 1047, 1094
SspMI CTAG 1 cut(s) 690
StyD4I CCNGG 1 cut(s) 10
TaaI ACNGT 4 cut(s) 68, 334, 608, 880
TaiI ACGT 4 cut(s) 158, 250, 288, 950
TaqI TCGA 7 cut(s) 113, 297, 336, 532, 640, 685, 847
TauI GCSGC 1 cut(s) 57
TfiI GAWTC 6 cut(s) 344, 617, 707, 776, 818, 864
Tru1I TTAA 4 cut(s) 147, 327, 768, 882
Tru9I TTAA 4 cut(s) 147, 327, 768, 882
TscAI CASTG 1 cut(s) 71
TseI GCWGC 4 cut(s) 57, 509, 635, 677
TspDTI ATGAA 5 cut(s) 17, 71, 645, 662, 737
TspRI CASTG 1 cut(s) 71
VpaK11BI GGWCC 1 cut(s) 31
XapI RAATTY 2 cut(s) 16, 230
XceI RCATGY 2 cut(s) 446, 875
XhoI CTCGAG 2 cut(s) 639, 684
XspI CTAG 1 cut(s) 690
ZraI GACGTC 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.