pycom15g10300

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Forward (+)
6735571 .. 6736005
435 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 186 bp
ATGCAGAAACAAATTTGGAGCTCAGTTTCTCTGAGTCGCCATTTGGTTCGAATTGGACATTTTATGCAAGCATGCATGCCCGAATCAGCAATTCGGGCTTTTTTTCAGTTTGCGAGTAATTTAGACTCCTTTCTCAACTCTGAAGCAGAAATGAGTTTGTTTAAAGTATTGTTGGATTCCCTTTGA

Protein Analysis

62

Amino Acids

7.0

Weight (kDa)

6.7

Isoelectric Point (pI)

56.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 12
AcuI CTGAAG 1 cut(s) 162
AluBI AGCT 1 cut(s) 21
AluI AGCT 1 cut(s) 21
Alw21I GWGCWC 1 cut(s) 23
ApoI RAATTY 1 cut(s) 12
AsuII TTCGAA 1 cut(s) 49
BanII GRGCYC 1 cut(s) 23
Bbv12I GWGCWC 1 cut(s) 23
Bpu14I TTCGAA 1 cut(s) 49
BseMII CTCAG 2 cut(s) 23, 36
BsiHKAI GWGCWC 1 cut(s) 23
Bsp119I TTCGAA 1 cut(s) 49
Bsp1286I GDGCHC 1 cut(s) 23
BspCNI CTCAG 2 cut(s) 24, 35
BspT104I TTCGAA 1 cut(s) 49
BstBI TTCGAA 1 cut(s) 49
BstC8I GCNNGC 3 cut(s) 69, 73, 77
BstDEI CTNAG 2 cut(s) 22, 32
BstMWI GCNNNNNNNGC 1 cut(s) 95
BstNSI RCATGY 2 cut(s) 75, 79
Cac8I GCNNGC 3 cut(s) 69, 73, 77
CviAII CATG 2 cut(s) 72, 76
CviJI RGCY 2 cut(s) 21, 98
CviKI_1 RGCY 2 cut(s) 21, 98
DdeI CTNAG 2 cut(s) 22, 32
DraI TTTAAA 1 cut(s) 163
Ecl136II GAGCTC 1 cut(s) 21
Eco24I GRGCYC 1 cut(s) 23
Eco53kI GAGCTC 1 cut(s) 21
Eco57I CTGAAG 1 cut(s) 162
EcoICRI GAGCTC 1 cut(s) 21
EcoT22I ATGCAT 1 cut(s) 77
EcoT38I GRGCYC 1 cut(s) 23
FaeI CATG 2 cut(s) 75, 79
FaiI YATR 3 cut(s) 65, 73, 77
FatI CATG 2 cut(s) 71, 75
FriOI GRGCYC 1 cut(s) 23
FspEI CC 9 cut(s) 29, 39, 53, 79, 80, 93, 94, 142, 158
Hin1II CATG 2 cut(s) 75, 79
HinfI GANTC 4 cut(s) 34, 83, 125, 176
Hpy188I TCNGA 2 cut(s) 33, 142
HpyCH4V TGCA 3 cut(s) 4, 67, 75
HpyF10VI GCNNNNNNNGC 1 cut(s) 95
HpyF3I CTNAG 2 cut(s) 22, 32
Hsp92II CATG 2 cut(s) 75, 79
LmnI GCTCC 1 cut(s) 18
MhlI GDGCHC 1 cut(s) 23
MluCI AATT 4 cut(s) 12, 51, 90, 118
MlyI GAGTC 2 cut(s) 43, 119
MmeI TCCRAC 1 cut(s) 153
Mph1103I ATGCAT 1 cut(s) 77
MseI TTAA 1 cut(s) 162
MwoI GCNNNNNNNGC 1 cut(s) 95
NlaIII CATG 2 cut(s) 75, 79
NsiI ATGCAT 1 cut(s) 77
NspI RCATGY 2 cut(s) 75, 79
NspV TTCGAA 1 cut(s) 49
PaeI GCATGC 2 cut(s) 75, 79
PfeI GAWTC 2 cut(s) 83, 176
PleI GAGTC 2 cut(s) 42, 119
PpsI GAGTC 2 cut(s) 42, 119
Psp124BI GAGCTC 1 cut(s) 23
SacI GAGCTC 1 cut(s) 23
SaqAI TTAA 1 cut(s) 162
SchI GAGTC 2 cut(s) 43, 119
SduI GDGCHC 1 cut(s) 23
SetI ASST 1 cut(s) 23
SfuI TTCGAA 1 cut(s) 49
SgeI CNNG 6 cut(s) 80, 84, 88, 92, 107, 126
SphI GCATGC 2 cut(s) 75, 79
Sse9I AATT 4 cut(s) 12, 51, 90, 118
SstI GAGCTC 1 cut(s) 23
TaqI TCGA 1 cut(s) 49
TasI AATT 4 cut(s) 12, 51, 90, 118
TfiI GAWTC 2 cut(s) 83, 176
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
XapI RAATTY 1 cut(s) 12
XceI RCATGY 2 cut(s) 75, 79
Zsp2I ATGCAT 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.