Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

6736378 .. 6736752

Gene Structure 375 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGATGGAGCGCTTTTGGGTCTTGGAATTAGGCCCCACTATTTCAACATACAATTCTCTGGAAAAGGGCAGTTGCAAGGCTGGAGATCTTGTAGGGGCTAGTAAGATCCTTAAGACGATGAAAAGTCGGGGTACTGCCCGTACTCCAACAACCTATAACTATTTCTCTAGGAACTGTTCAAAGTATGGGAAAATTGAGGTTTATTGGACCTTTATACCAAAAGGATTGAATCTAGATGATCGATCGCTTACTTTCCCAACTTTGTTGGAGATGTTAAGTGTGGAGGGGAGATTGAATTTTGCTATTCAAGTTAGCAAGGAAATGATCGATCAAGGGGATGGGAGCTACAAGCAACATACTTTACAATATGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009787 GO:0009788 GO:0009791 GO:0009845 GO:0009966 GO:0009968 GO:0009987 GO:0010029 GO:0010646 GO:0010648 GO:0016070 GO:0016787 GO:0016788 GO:0023051 GO:0023057 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0090351 GO:0097159 GO:1900140 GO:1901360 GO:1901363 GO:1901419 GO:1901420 GO:1905957 GO:1905958 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

125

Amino Acids

14.08

Weight (kDa)

9.1

Isoelectric Point (pI)

20.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	12 - 60	1.4e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	100
AcsI	RAATTY	1 cut(s)	295
AfaI	GTAC	2 cut(s)	133, 142
AfeI	AGCGCT	1 cut(s)	11
AflII	CTTAAG	1 cut(s)	110
AgsI	TTSAA	5 cut(s)	45, 180, 229, 295, 308
AluBI	AGCT	1 cut(s)	345
AluI	AGCT	1 cut(s)	345
AlwI	GGATC	1 cut(s)	100
Aor51HI	AGCGCT	1 cut(s)	11
AoxI	GGCC	1 cut(s)	31
ApoI	RAATTY	1 cut(s)	295
AspLEI	GCGC	1 cut(s)	12
AspS9I	GGNCC	2 cut(s)	32, 207
AvaII	GGWCC	1 cut(s)	207
BccI	CCATC	1 cut(s)	332
BfaI	CTAG	3 cut(s)	99, 168, 233
BfoI	RGCGCY	1 cut(s)	13
BfrI	CTTAAG	1 cut(s)	110
BglII	AGATCT	1 cut(s)	85
Bme18I	GGWCC	1 cut(s)	207
BmgT120I	GGNCC	2 cut(s)	32, 207
BmiI	GGNNCC	1 cut(s)	34
BpmI	CTGGAG	1 cut(s)	102
Bsa29I	ATCGAT	2 cut(s)	241, 327
BsaXI	ACNNNNNCTCC	2 cut(s)	75, 105
BseCI	ATCGAT	2 cut(s)	241, 327
BseGI	GGATG	1 cut(s)	343
Bsh1285I	CGRYCG	1 cut(s)	245
BshFI	GGCC	1 cut(s)	33
BshVI	ATCGAT	2 cut(s)	241, 327
BsiEI	CGRYCG	1 cut(s)	245
BsnI	GGCC	1 cut(s)	33
Bsp143I	GATC	6 cut(s)	85, 105, 238, 242, 324, 328
BspANI	GGCC	1 cut(s)	33
BspDI	ATCGAT	2 cut(s)	241, 327
BspLI	GGNNCC	1 cut(s)	34
BspPI	GGATC	1 cut(s)	100
BspTI	CTTAAG	1 cut(s)	110
BssMI	GATC	6 cut(s)	85, 105, 238, 242, 324, 328
Bst4CI	ACNGT	1 cut(s)	176
BstAFI	CTTAAG	1 cut(s)	110
BstF5I	GGATG	1 cut(s)	343
BstH2I	RGCGCY	1 cut(s)	13
BstHHI	GCGC	1 cut(s)	12
BstKTI	GATC	6 cut(s)	88, 108, 241, 245, 327, 331
BstMBI	GATC	6 cut(s)	85, 105, 238, 242, 324, 328
BstMCI	CGRYCG	1 cut(s)	245
BstX2I	RGATCY	2 cut(s)	85, 105
BstYI	RGATCY	2 cut(s)	85, 105
Bsu15I	ATCGAT	2 cut(s)	241, 327
BsuRI	GGCC	1 cut(s)	33
BsuTUI	ATCGAT	2 cut(s)	241, 327
BtsCI	GGATG	1 cut(s)	343
CfoI	GCGC	1 cut(s)	12
Cfr13I	GGNCC	2 cut(s)	32, 207
ClaI	ATCGAT	2 cut(s)	241, 327
Csp6I	GTAC	2 cut(s)	132, 141
CviJI	RGCY	4 cut(s)	33, 80, 98, 345
CviKI_1	RGCY	4 cut(s)	33, 80, 98, 345
CviQI	GTAC	2 cut(s)	132, 141
DpnI	GATC	6 cut(s)	87, 107, 240, 244, 326, 330
DpnII	GATC	6 cut(s)	85, 105, 238, 242, 324, 328
Eco47I	GGWCC	1 cut(s)	207
Eco47III	AGCGCT	1 cut(s)	11
EcoO109I	RGGNCCY	1 cut(s)	32
EcoT22I	ATGCAT	1 cut(s)	373
FaiI	YATR	7 cut(s)	49, 156, 186, 215, 357, 369, 373
FokI	GGATG	1 cut(s)	350
FspBI	CTAG	3 cut(s)	99, 168, 233
GlaI	GCGC	1 cut(s)	11
GsuI	CTGGAG	1 cut(s)	102
HaeII	RGCGCY	1 cut(s)	13
HaeIII	GGCC	1 cut(s)	33
HhaI	GCGC	1 cut(s)	12
Hin6I	GCGC	1 cut(s)	10
HinP1I	GCGC	1 cut(s)	10
HinfI	GANTC	1 cut(s)	229
Hpy188III	TCNNGA	2 cut(s)	59, 233
HpyCH4III	ACNGT	1 cut(s)	176
HpyCH4V	TGCA	2 cut(s)	75, 371
HspAI	GCGC	1 cut(s)	10
Kzo9I	GATC	6 cut(s)	85, 105, 238, 242, 324, 328
LmnI	GCTCC	2 cut(s)	7, 342
LpnPI	CCDG	2 cut(s)	44, 66
MaeI	CTAG	3 cut(s)	99, 168, 233
MalI	GATC	6 cut(s)	87, 107, 240, 244, 326, 330
MboI	GATC	6 cut(s)	85, 105, 238, 242, 324, 328
MflI	RGATCY	2 cut(s)	85, 105
MluCI	AATT	4 cut(s)	26, 52, 192, 295
MmeI	TCCRAC	2 cut(s)	170, 246
MnlI	CCTC	2 cut(s)	190, 277
Mph1103I	ATGCAT	1 cut(s)	373
MseI	TTAA	2 cut(s)	111, 275
MspCI	CTTAAG	1 cut(s)	110
NdeII	GATC	6 cut(s)	85, 105, 238, 242, 324, 328
NlaIV	GGNNCC	1 cut(s)	34
NsiI	ATGCAT	1 cut(s)	373
PfeI	GAWTC	1 cut(s)	229
Ple19I	CGATCG	1 cut(s)	245
PspN4I	GGNNCC	1 cut(s)	34
PspPI	GGNCC	2 cut(s)	32, 207
PsuI	RGATCY	2 cut(s)	85, 105
PvuI	CGATCG	1 cut(s)	245
RsaI	GTAC	2 cut(s)	133, 142
RsaNI	GTAC	2 cut(s)	132, 141
SaqAI	TTAA	2 cut(s)	111, 275
Sau3AI	GATC	6 cut(s)	85, 105, 238, 242, 324, 328
Sau96I	GGNCC	2 cut(s)	32, 207
SetI	ASST	4 cut(s)	155, 201, 212, 347
SinI	GGWCC	1 cut(s)	207
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	4 cut(s)	26, 52, 192, 295
SspMI	CTAG	3 cut(s)	99, 168, 233
TaaI	ACNGT	1 cut(s)	176
TaqI	TCGA	2 cut(s)	241, 327
TasI	AATT	4 cut(s)	26, 52, 192, 295
TfiI	GAWTC	1 cut(s)	229
Tru1I	TTAA	2 cut(s)	111, 275
Tru9I	TTAA	2 cut(s)	111, 275
TspDTI	ATGAA	1 cut(s)	134
Vha464I	CTTAAG	1 cut(s)	110
VpaK11BI	GGWCC	1 cut(s)	207
XapI	RAATTY	1 cut(s)	295
XbaI	TCTAGA	1 cut(s)	232
XspI	CTAG	3 cut(s)	99, 168, 233
Zsp2I	ATGCAT	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.