pycom15g10570

alpha,alpha-trehalose-phosphate synthase UDP-forming

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Forward (+)
7052888 .. 7053487
600 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 351 bp
ATGAGGTGGTCTGCCAACAAGGATTGGGAAGTTTGCGAGCAGAGCAATGATTTTGGGTGGATACAGATAGCTGAACCAGTTACGAAACTCTATACAGAAGCCACTGATGGTTCTAGCATTGAAACCAAGGAGAGTGCCTTTGTTCGGCACCATCAAGATGGAGATCTTGGTTTTGGATCCAACCAGGCTAAAGAGTTACTAGACCATTTAGAAAGTGTGCTAGCAAATGAACCAGTCTGCTGGGAGTGGTCAATACGTCGCAGATCAAGTGAAGCCACATATAGTGTCAGTAAAGGCGTGGCTGCAAAAAAGACCTTCACATCATGCACGTGGGGAAGCAGGCTGACTTAG

Protein Analysis

117

Amino Acids

13.12

Weight (kDa)

5.34

Isoelectric Point (pI)

62.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Trehalose_PPase PF02358 1 - 78 1.8e-16 Trehalose-phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 147
AclWI GGATC 2 cut(s) 171, 184
AcvI CACGTG 1 cut(s) 330
AfiI CCNNNNNNNGG 1 cut(s) 144
AgsI TTSAA 1 cut(s) 122
AjnI CCWGG 1 cut(s) 183
AluBI AGCT 1 cut(s) 71
AluI AGCT 1 cut(s) 71
AlwI GGATC 2 cut(s) 171, 184
ApeKI GCWGC 1 cut(s) 302
AsuNHI GCTAGC 1 cut(s) 220
BamHI GGATCC 1 cut(s) 176
BanI GGYRCC 1 cut(s) 147
BbrPI CACGTG 1 cut(s) 330
BbvI GCAGC 1 cut(s) 289
BccI CCATC 3 cut(s) 101, 152, 159
BciT130I CCWGG 1 cut(s) 185
BciVI GTATCC 1 cut(s) 54
BfaI CTAG 3 cut(s) 114, 200, 221
BfuI GTATCC 1 cut(s) 54
BglII AGATCT 1 cut(s) 163
BisI GCNGC 1 cut(s) 303
BlsI GCNGC 1 cut(s) 304
Bme1390I CCNGG 1 cut(s) 185
BmiI GGNNCC 2 cut(s) 149, 178
BmrFI CCNGG 1 cut(s) 185
BmtI GCTAGC 1 cut(s) 224
BsaAI YACGTR 1 cut(s) 330
BsaBI GATNNNNATC 1 cut(s) 162
BsaJI CCNNGG 1 cut(s) 126
Bsc4I CCNNNNNNNGG 1 cut(s) 144
Bse1I ACTGG 2 cut(s) 77, 233
Bse3DI GCAATG 1 cut(s) 52
Bse8I GATNNNNATC 1 cut(s) 162
BseBI CCWGG 1 cut(s) 185
BseDI CCNNGG 1 cut(s) 126
BseJI GATNNNNATC 1 cut(s) 162
BseLI CCNNNNNNNGG 1 cut(s) 144
BseMI GCAATG 1 cut(s) 52
BseNI ACTGG 2 cut(s) 77, 233
BseXI GCAGC 1 cut(s) 289
BseYI CCCAGC 1 cut(s) 240
BshNI GGYRCC 1 cut(s) 147
BslI CCNNNNNNNGG 1 cut(s) 144
Bsp143I GATC 3 cut(s) 163, 176, 263
BspLI GGNNCC 2 cut(s) 149, 178
BspOI GCTAGC 1 cut(s) 224
BspPI GGATC 2 cut(s) 171, 184
BspT107I GGYRCC 1 cut(s) 147
BsrDI GCAATG 1 cut(s) 52
BsrI ACTGG 2 cut(s) 77, 233
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 3 cut(s) 163, 176, 263
BssT1I CCWWGG 1 cut(s) 126
Bst2UI CCWGG 1 cut(s) 185
BstBAI YACGTR 1 cut(s) 330
BstC8I GCNNGC 3 cut(s) 38, 222, 341
BstDEI CTNAG 1 cut(s) 348
BstKTI GATC 3 cut(s) 166, 179, 266
BstMBI GATC 3 cut(s) 163, 176, 263
BstMWI GCNNNNNNNGC 1 cut(s) 42
BstNI CCWGG 1 cut(s) 185
BstSCI CCNGG 1 cut(s) 183
BstV1I GCAGC 1 cut(s) 289
BstX2I RGATCY 2 cut(s) 163, 176
BstXI CCANNNNNNTGG 2 cut(s) 158, 240
BstYI RGATCY 2 cut(s) 163, 176
BsuI GTATCC 1 cut(s) 54
BtsIMutI CAGTG 1 cut(s) 102
Cac8I GCNNGC 3 cut(s) 38, 222, 341
CviAII CATG 1 cut(s) 324
CviJI RGCY 6 cut(s) 71, 101, 188, 275, 302, 343
CviKI_1 RGCY 6 cut(s) 71, 101, 188, 275, 302, 343
DdeI CTNAG 1 cut(s) 348
DpnI GATC 3 cut(s) 165, 178, 265
DpnII GATC 3 cut(s) 163, 176, 263
Eco130I CCWWGG 1 cut(s) 126
Eco72I CACGTG 1 cut(s) 330
EcoRII CCWGG 1 cut(s) 183
EcoT14I CCWWGG 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 126
FaeI CATG 1 cut(s) 327
FaiI YATR 4 cut(s) 93, 280, 282, 325
FatI CATG 1 cut(s) 323
Fnu4HI GCNGC 1 cut(s) 303
Fsp4HI GCNGC 1 cut(s) 303
FspBI CTAG 3 cut(s) 114, 200, 221
GluI GCNGC 1 cut(s) 303
GsaI CCCAGC 1 cut(s) 244
Hin1II CATG 1 cut(s) 327
Hpy188III TCNNGA 1 cut(s) 155
Hpy99I CGWCG 1 cut(s) 261
HpyAV CCTTC 1 cut(s) 325
HpyCH4IV ACGT 2 cut(s) 256, 329
HpyCH4V TGCA 2 cut(s) 305, 327
HpyF10VI GCNNNNNNNGC 1 cut(s) 42
HpyF3I CTNAG 1 cut(s) 348
HpySE526I ACGT 2 cut(s) 256, 329
Hsp92II CATG 1 cut(s) 327
Kzo9I GATC 3 cut(s) 163, 176, 263
LpnPI CCDG 6 cut(s) 90, 170, 197, 226, 246, 325
Lsp1109I GCAGC 1 cut(s) 289
MaeI CTAG 3 cut(s) 114, 200, 221
MaeII ACGT 2 cut(s) 256, 329
MaeIII GTNAC 2 cut(s) 79, 195
MalI GATC 3 cut(s) 165, 178, 265
MboI GATC 3 cut(s) 163, 176, 263
MflI RGATCY 2 cut(s) 163, 176
MmeI TCCRAC 1 cut(s) 204
MslI CAYNNNNRTG 2 cut(s) 156, 328
MspR9I CCNGG 1 cut(s) 185
MvaI CCWGG 1 cut(s) 185
MwoI GCNNNNNNNGC 1 cut(s) 42
NdeII GATC 3 cut(s) 163, 176, 263
NheI GCTAGC 1 cut(s) 220
NlaIII CATG 1 cut(s) 327
NlaIV GGNNCC 2 cut(s) 149, 178
PkrI GCNGC 1 cut(s) 304
PmaCI CACGTG 1 cut(s) 330
PmlI CACGTG 1 cut(s) 330
Ppu21I YACGTR 1 cut(s) 330
Psp6I CCWGG 1 cut(s) 183
PspCI CACGTG 1 cut(s) 330
PspFI CCCAGC 1 cut(s) 240
PspGI CCWGG 1 cut(s) 183
PspN4I GGNNCC 2 cut(s) 149, 178
PsuI RGATCY 2 cut(s) 163, 176
RseI CAYNNNNRTG 2 cut(s) 156, 328
SatI GCNGC 1 cut(s) 303
Sau3AI GATC 3 cut(s) 163, 176, 263
ScrFI CCNGG 1 cut(s) 185
SetI ASST 5 cut(s) 8, 73, 259, 317, 332
SmiMI CAYNNNNRTG 2 cut(s) 156, 328
SspMI CTAG 3 cut(s) 114, 200, 221
StyD4I CCNGG 1 cut(s) 183
StyI CCWWGG 1 cut(s) 126
TaiI ACGT 2 cut(s) 259, 332
TscAI CASTG 1 cut(s) 109
TseI GCWGC 1 cut(s) 302
TspDTI ATGAA 1 cut(s) 243
TspRI CASTG 1 cut(s) 109
XspI CTAG 3 cut(s) 114, 200, 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.