pycom15g11510

Synaptotagmin-like mitochondrial-lipid-binding domain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Forward (+)
7794025 .. 7795028
1004 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 213 bp
ATGGAATTCTTCTTTGGATTGATAATCGGCATTGCCATCGGCATTGGGTTGATCGTAGCTTTTGCTCGGGCAGAGAGAATCCGATCCAAATTTCGTTCTGATTTGGCCAAGACAGTGGCTGCGTTTGCAAGGATGACAGTGCAAGATTCCAGAAAGCTTCTTCCACCTCAGTATTATCCATCTTGGCTTGTCTTCACAAATCGCCAGAATTGA

Protein Analysis

71

Amino Acids

8.01

Weight (kDa)

10.92

Isoelectric Point (pI)

41.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 78
AcoI YGGCCR 1 cut(s) 105
AcsI RAATTY 2 cut(s) 5, 89
AjuI GAANNNNNNNTTGG 1 cut(s) 29
AluBI AGCT 2 cut(s) 59, 157
AluI AGCT 2 cut(s) 59, 157
AlwI GGATC 1 cut(s) 78
AlwNI CAGNNNCTG 1 cut(s) 119
Ama87I CYCGRG 1 cut(s) 66
AoxI GGCC 1 cut(s) 105
ApeKI GCWGC 1 cut(s) 119
ApoI RAATTY 2 cut(s) 5, 89
AvaI CYCGRG 1 cut(s) 66
BalI TGGCCA 1 cut(s) 107
BbsI GAAGAC 1 cut(s) 184
BbvI GCAGC 1 cut(s) 106
BccI CCATC 2 cut(s) 44, 187
BcgI CGANNNNNNTGC 2 cut(s) 19, 53
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
BmeT110I CYCGRG 1 cut(s) 66
BpiI GAAGAC 1 cut(s) 184
Bse3DI GCAATG 1 cut(s) 30
BseGI GGATG 1 cut(s) 138
BseMI GCAATG 1 cut(s) 30
BseMII CTCAG 1 cut(s) 182
BseXI GCAGC 1 cut(s) 106
BshFI GGCC 1 cut(s) 107
BsiHKCI CYCGRG 1 cut(s) 66
BsnI GGCC 1 cut(s) 107
BsoBI CYCGRG 1 cut(s) 66
Bsp143I GATC 2 cut(s) 51, 83
BspANI GGCC 1 cut(s) 107
BspCNI CTCAG 1 cut(s) 181
BspPI GGATC 1 cut(s) 78
BsrDI GCAATG 1 cut(s) 30
BssMI GATC 2 cut(s) 51, 83
Bst4CI ACNGT 2 cut(s) 115, 139
BstDEI CTNAG 1 cut(s) 168
BstF5I GGATG 1 cut(s) 138
BstKTI GATC 2 cut(s) 54, 86
BstMBI GATC 2 cut(s) 51, 83
BstMWI GCNNNNNNNGC 1 cut(s) 125
BstV1I GCAGC 1 cut(s) 106
BstV2I GAAGAC 1 cut(s) 184
BstXI CCANNNNNNTGG 1 cut(s) 115
BsuRI GGCC 1 cut(s) 107
BtsCI GGATG 1 cut(s) 138
BtsIMutI CAGTG 2 cut(s) 120, 144
CaiI CAGNNNCTG 1 cut(s) 119
CviJI RGCY 5 cut(s) 59, 107, 119, 157, 187
CviKI_1 RGCY 5 cut(s) 59, 107, 119, 157, 187
DdeI CTNAG 1 cut(s) 168
DpnI GATC 2 cut(s) 53, 85
DpnII GATC 2 cut(s) 51, 83
EaeI YGGCCR 1 cut(s) 105
Eco88I CYCGRG 1 cut(s) 66
EcoRI GAATTC 1 cut(s) 5
Fnu4HI GCNGC 1 cut(s) 120
FokI GGATG 1 cut(s) 145
Fsp4HI GCNGC 1 cut(s) 120
GluI GCNGC 1 cut(s) 120
HaeIII GGCC 1 cut(s) 107
HindIII AAGCTT 1 cut(s) 155
HinfI GANTC 2 cut(s) 78, 146
Hpy188I TCNGA 2 cut(s) 83, 100
Hpy188III TCNNGA 1 cut(s) 150
HpyCH4III ACNGT 2 cut(s) 115, 139
HpyCH4V TGCA 2 cut(s) 128, 142
HpyF10VI GCNNNNNNNGC 1 cut(s) 125
HpyF3I CTNAG 1 cut(s) 168
Kzo9I GATC 2 cut(s) 51, 83
LpnPI CCDG 1 cut(s) 163
Lsp1109I GCAGC 1 cut(s) 106
MalI GATC 2 cut(s) 53, 85
MboI GATC 2 cut(s) 51, 83
MboII GAAGA 2 cut(s) 152, 184
MlsI TGGCCA 1 cut(s) 107
MluCI AATT 3 cut(s) 5, 89, 208
MluNI TGGCCA 1 cut(s) 107
MnlI CCTC 1 cut(s) 177
Mox20I TGGCCA 1 cut(s) 107
MscI TGGCCA 1 cut(s) 107
Msp20I TGGCCA 1 cut(s) 107
MwoI GCNNNNNNNGC 1 cut(s) 125
NdeII GATC 2 cut(s) 51, 83
PfeI GAWTC 2 cut(s) 78, 146
PkrI GCNGC 1 cut(s) 121
PstNI CAGNNNCTG 1 cut(s) 119
SatI GCNGC 1 cut(s) 120
Sau3AI GATC 2 cut(s) 51, 83
SetI ASST 3 cut(s) 61, 159, 169
SgeI CNNG 8 cut(s) 78, 80, 121, 141, 155, 162, 195, 200
Sse9I AATT 3 cut(s) 5, 89, 208
TaaI ACNGT 2 cut(s) 115, 139
TasI AATT 3 cut(s) 5, 89, 208
TfiI GAWTC 2 cut(s) 78, 146
TscAI CASTG 2 cut(s) 120, 144
TseI GCWGC 1 cut(s) 119
TspRI CASTG 2 cut(s) 120, 144
XapI RAATTY 2 cut(s) 5, 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.