pycom15g13800

Leucine-rich repeat receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Reverse (-)
9409792 .. 9410316
525 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 525 bp
ATGTGTTCTTCCTTTCCTCTGCCATACACTCATCCTCCTTCGCTCTCAACCTCGAGGGCAACGGCAGCTCTGACGGCCTCCATGCCTTCGTCGCCGAGGTTGGCCTCGTGCTTAAAGAATGCCTCTCGTTTTCAATTTGGTCAAACAACAGACCCCCAATTTCAGGGATTCCCCCACCACGCTTCCAATCCCAATCGACGTTCTGAATTTCCGAGATTTCAATTGCCTTCATCTGAGTCGCTGAGCTTCGATTCCACTACAGCAAAGATCCAATATTTTCTCAATTTCGAAAACGGAAGAAAGAAACCATCTTTCACACGTTCTCTGCAATTTCTGGGTTTACCTTCATACTGGTGCTACACAGACAGACCCTCTTCGCCTCCCACTTCTTCACCGCCTCCGACCGACAGAAGCAAGCTTGTGTTTTTTGACCACAGGCAGCCGTTTGAACTGGAGGATTTGATGTGGGCACTAGCGGAGATGTTGGGGAAAGAGAGCCTGGGGCGGTGTACAAGGCGGTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009832 GO:0009834 GO:0009987 GO:0016020 GO:0042546 GO:0044085 GO:0044464 GO:0071554 GO:0071669 GO:0071840 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

175

Amino Acids

19.7

Weight (kDa)

9.46

Isoelectric Point (pI)

69.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 52
AciI CCGC 4 cut(s) 395, 476, 505, 517
AclWI GGATC 1 cut(s) 262
AcsI RAATTY 1 cut(s) 206
AfaI GTAC 1 cut(s) 511
AfiI CCNNNNNNNGG 1 cut(s) 163
AflIII ACRYGT 1 cut(s) 317
AgsI TTSAA 3 cut(s) 134, 221, 449
AjnI CCWGG 1 cut(s) 498
AluBI AGCT 3 cut(s) 68, 246, 418
AluI AGCT 3 cut(s) 68, 246, 418
AlwI GGATC 1 cut(s) 262
Ama87I CYCGRG 1 cut(s) 52
AoxI GGCC 2 cut(s) 75, 102
ApeKI GCWGC 2 cut(s) 65, 439
ApoI RAATTY 1 cut(s) 206
AsuHPI GGTGA 1 cut(s) 384
AsuII TTCGAA 1 cut(s) 288
AvaI CYCGRG 1 cut(s) 52
BaeGI GKGCMC 1 cut(s) 472
BauI CACGAG 1 cut(s) 106
BbvI GCAGC 2 cut(s) 77, 451
BccI CCATC 1 cut(s) 316
BceAI ACGGC 3 cut(s) 78, 90, 427
BciT130I CCWGG 1 cut(s) 500
BfaI CTAG 1 cut(s) 473
BfmI CTRYAG 1 cut(s) 258
BisI GCNGC 2 cut(s) 66, 440
BlpI GCTNAGC 1 cut(s) 242
BlsI GCNGC 2 cut(s) 67, 441
Bme1390I CCNGG 1 cut(s) 500
BmeT110I CYCGRG 1 cut(s) 52
BmrFI CCNGG 1 cut(s) 500
BpmI CTGGAG 1 cut(s) 473
Bpu1102I GCTNAGC 1 cut(s) 242
Bpu14I TTCGAA 1 cut(s) 288
BsaJI CCNNGG 2 cut(s) 95, 499
BsaXI ACNNNNNCTCC 2 cut(s) 19, 49
Bsc4I CCNNNNNNNGG 1 cut(s) 163
Bse1I ACTGG 2 cut(s) 356, 456
BseBI CCWGG 1 cut(s) 500
BseDI CCNNGG 2 cut(s) 95, 499
BseGI GGATG 1 cut(s) 31
BseLI CCNNNNNNNGG 1 cut(s) 163
BseMII CTCAG 2 cut(s) 225, 233
BseNI ACTGG 2 cut(s) 356, 456
BseSI GKGCMC 1 cut(s) 472
BseXI GCAGC 2 cut(s) 77, 451
Bsh1285I CGRYCG 1 cut(s) 405
BshFI GGCC 2 cut(s) 77, 104
BsiEI CGRYCG 1 cut(s) 405
BsiHKCI CYCGRG 1 cut(s) 52
BslI CCNNNNNNNGG 1 cut(s) 163
BsmI GAATGC 1 cut(s) 124
BsnI GGCC 2 cut(s) 77, 104
BsoBI CYCGRG 1 cut(s) 52
Bsp119I TTCGAA 1 cut(s) 288
Bsp1286I GDGCHC 1 cut(s) 472
Bsp1407I TGTACA 1 cut(s) 509
Bsp143I GATC 1 cut(s) 267
Bsp1720I GCTNAGC 1 cut(s) 242
BspACI CCGC 4 cut(s) 395, 476, 505, 517
BspANI GGCC 2 cut(s) 77, 104
BspCNI CTCAG 2 cut(s) 226, 234
BspPI GGATC 1 cut(s) 262
BspT104I TTCGAA 1 cut(s) 288
BsrGI TGTACA 1 cut(s) 509
BsrI ACTGG 2 cut(s) 356, 456
BssECI CCNNGG 2 cut(s) 95, 499
BssMI GATC 1 cut(s) 267
BssSI CACGAG 1 cut(s) 106
Bst2BI CACGAG 1 cut(s) 106
Bst2UI CCWGG 1 cut(s) 500
Bst6I CTCTTC 1 cut(s) 379
BstAUI TGTACA 1 cut(s) 509
BstBI TTCGAA 1 cut(s) 288
BstC8I GCNNGC 1 cut(s) 416
BstDEI CTNAG 2 cut(s) 234, 242
BstF5I GGATG 1 cut(s) 31
BstKTI GATC 1 cut(s) 270
BstMBI GATC 1 cut(s) 267
BstMCI CGRYCG 1 cut(s) 405
BstMWI GCNNNNNNNGC 3 cut(s) 65, 74, 91
BstNI CCWGG 1 cut(s) 500
BstSCI CCNGG 1 cut(s) 498
BstSFI CTRYAG 1 cut(s) 258
BstSLI GKGCMC 1 cut(s) 472
BstV1I GCAGC 2 cut(s) 77, 451
BstX2I RGATCY 1 cut(s) 267
BstYI RGATCY 1 cut(s) 267
BsuRI GGCC 2 cut(s) 77, 104
BtsCI GGATG 1 cut(s) 31
Cac8I GCNNGC 1 cut(s) 416
Csp6I GTAC 1 cut(s) 510
CviAII CATG 1 cut(s) 82
CviJI RGCY 7 cut(s) 68, 77, 104, 246, 418, 442, 498
CviKI_1 RGCY 7 cut(s) 68, 77, 104, 246, 418, 442, 498
CviQI GTAC 1 cut(s) 510
DdeI CTNAG 2 cut(s) 234, 242
DpnI GATC 1 cut(s) 269
DpnII GATC 1 cut(s) 267
Eam1104I CTCTTC 1 cut(s) 379
EarI CTCTTC 1 cut(s) 379
Eco88I CYCGRG 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 498
FaeI CATG 1 cut(s) 85
FaiI YATR 3 cut(s) 25, 83, 349
FatI CATG 1 cut(s) 81
Fnu4HI GCNGC 2 cut(s) 66, 440
FokI GGATG 1 cut(s) 18
Fsp4HI GCNGC 2 cut(s) 66, 440
FspBI CTAG 1 cut(s) 473
GluI GCNGC 2 cut(s) 66, 440
GsuI CTGGAG 1 cut(s) 473
HaeIII GGCC 2 cut(s) 77, 104
Hin1II CATG 1 cut(s) 85
HindIII AAGCTT 1 cut(s) 416
HinfI GANTC 3 cut(s) 168, 236, 251
HphI GGTGA 1 cut(s) 384
Hpy166II GTNNAC 2 cut(s) 341, 510
Hpy188I TCNGA 5 cut(s) 72, 205, 213, 235, 402
Hpy8I GTNNAC 2 cut(s) 341, 510
Hpy99I CGWCG 2 cut(s) 94, 201
HpyAV CCTTC 4 cut(s) 48, 96, 237, 354
HpyCH4IV ACGT 2 cut(s) 199, 319
HpyCH4V TGCA 1 cut(s) 328
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 74, 91
HpyF3I CTNAG 2 cut(s) 234, 242
HpySE526I ACGT 2 cut(s) 199, 319
Hsp92II CATG 1 cut(s) 85
Kzo9I GATC 1 cut(s) 267
LpnPI CCDG 7 cut(s) 149, 320, 337, 421, 437, 485, 512
Lsp1109I GCAGC 2 cut(s) 77, 451
MaeI CTAG 1 cut(s) 473
MaeII ACGT 2 cut(s) 199, 319
MalI GATC 1 cut(s) 269
MboI GATC 1 cut(s) 267
MboII GAAGA 3 cut(s) 309, 366, 381
MfeI CAATTG 1 cut(s) 221
MflI RGATCY 1 cut(s) 267
MhlI GDGCHC 1 cut(s) 472
MluCI AATT 6 cut(s) 134, 158, 206, 221, 283, 329
MlyI GAGTC 1 cut(s) 245
MmeI TCCRAC 1 cut(s) 425
MseI TTAA 1 cut(s) 113
MslI CAYNNNNRTG 1 cut(s) 352
MspR9I CCNGG 1 cut(s) 500
MunI CAATTG 1 cut(s) 221
Mva1269I GAATGC 1 cut(s) 124
MvaI CCWGG 1 cut(s) 500
MwoI GCNNNNNNNGC 3 cut(s) 65, 74, 91
NdeII GATC 1 cut(s) 267
NlaIII CATG 1 cut(s) 85
NmeAIII GCCGAG 1 cut(s) 120
NspV TTCGAA 1 cut(s) 288
PaeR7I CTCGAG 1 cut(s) 52
PctI GAATGC 1 cut(s) 124
PfeI GAWTC 2 cut(s) 168, 251
PkrI GCNGC 2 cut(s) 67, 441
PleI GAGTC 1 cut(s) 244
PpsI GAGTC 1 cut(s) 244
Psp6I CCWGG 1 cut(s) 498
PspGI CCWGG 1 cut(s) 498
PspXI VCTCGAGB 1 cut(s) 52
PsuI RGATCY 1 cut(s) 267
RsaI GTAC 1 cut(s) 511
RsaNI GTAC 1 cut(s) 510
RseI CAYNNNNRTG 1 cut(s) 352
SaqAI TTAA 1 cut(s) 113
SatI GCNGC 2 cut(s) 66, 440
Sau3AI GATC 1 cut(s) 267
SchI GAGTC 1 cut(s) 245
ScrFI CCNGG 1 cut(s) 500
SduI GDGCHC 1 cut(s) 472
SetI ASST 8 cut(s) 53, 70, 101, 202, 248, 322, 346, 420
SfcI CTRYAG 1 cut(s) 258
Sfr274I CTCGAG 1 cut(s) 52
SfuI TTCGAA 1 cut(s) 288
SlaI CTCGAG 1 cut(s) 52
SmiMI CAYNNNNRTG 1 cut(s) 352
SmlI CTYRAG 1 cut(s) 52
SmoI CTYRAG 1 cut(s) 52
Sse9I AATT 6 cut(s) 134, 158, 206, 221, 283, 329
SsiI CCGC 4 cut(s) 395, 476, 505, 517
SspI AATATT 1 cut(s) 275
SspMI CTAG 1 cut(s) 473
StyD4I CCNGG 1 cut(s) 498
TaiI ACGT 2 cut(s) 202, 322
TaqI TCGA 4 cut(s) 53, 196, 249, 288
TaqII GACCGA 1 cut(s) 419
TasI AATT 6 cut(s) 134, 158, 206, 221, 283, 329
TatI WGTACW 1 cut(s) 509
TfiI GAWTC 2 cut(s) 168, 251
Tru1I TTAA 1 cut(s) 113
Tru9I TTAA 1 cut(s) 113
TseI GCWGC 2 cut(s) 65, 439
TspDTI ATGAA 2 cut(s) 219, 336
TspGWI ACGGA 1 cut(s) 309
XapI RAATTY 1 cut(s) 206
XhoI CTCGAG 1 cut(s) 52
XspI CTAG 1 cut(s) 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.