pycom15g14520

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Forward (+)
9918333 .. 9919275
943 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 258 bp
ATGAATGCGGATAGCACGTACTACTCTTTCACAAATTCTAAGAGATGGGAATCAATGAAGGAAACTGGTAAAAAAAATTGGCTGAGCAGCTCCTTCAAGAAGCATTTCCCTTGGTCTCTCTCCACACCCCACAACCCAACCCCCCCCCCCCCCCCCCCCCCCCCCACTAAACCGGTTTACACCACCGTCCTGGTAACTGCTCAAAGAAGGGCTCTCTCTTTCAAGTGTTTATGTGATCATGGGAATTCAGAAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

86

Amino Acids

9.67

Weight (kDa)

9.64

Isoelectric Point (pI)

51.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 8
AcsI RAATTY 2 cut(s) 34, 244
AfaI GTAC 1 cut(s) 20
AgeI ACCGGT 1 cut(s) 172
AgsI TTSAA 2 cut(s) 97, 223
AjnI CCWGG 1 cut(s) 189
AluBI AGCT 1 cut(s) 90
AluI AGCT 1 cut(s) 90
Alw26I GTCTC 1 cut(s) 120
ApeKI GCWGC 1 cut(s) 87
ApoI RAATTY 2 cut(s) 34, 244
AsiGI ACCGGT 1 cut(s) 172
Asp700I GAANNNNTTC 1 cut(s) 104
BanII GRGCYC 1 cut(s) 214
BbvI GCAGC 1 cut(s) 99
BccI CCATC 1 cut(s) 39
BciT130I CCWGG 1 cut(s) 191
BclI TGATCA 1 cut(s) 235
BcoDI GTCTC 1 cut(s) 120
BisI GCNGC 1 cut(s) 88
BlpI GCTNAGC 1 cut(s) 83
BlsI GCNGC 1 cut(s) 89
Bme1390I CCNGG 1 cut(s) 191
BmrFI CCNGG 1 cut(s) 191
Bpu1102I GCTNAGC 1 cut(s) 83
BsaAI YACGTR 1 cut(s) 18
BsaBI GATNNNNATC 1 cut(s) 49
BsaI GGTCTC 1 cut(s) 120
BsaJI CCNNGG 1 cut(s) 110
BsaWI WCCGGW 1 cut(s) 172
Bse118I RCCGGY 1 cut(s) 172
Bse1I ACTGG 1 cut(s) 70
Bse8I GATNNNNATC 1 cut(s) 49
BseBI CCWGG 1 cut(s) 191
BseDI CCNNGG 1 cut(s) 110
BseJI GATNNNNATC 1 cut(s) 49
BseMII CTCAG 1 cut(s) 74
BseNI ACTGG 1 cut(s) 70
BseXI GCAGC 1 cut(s) 99
BshTI ACCGGT 1 cut(s) 172
BsiSI CCGG 1 cut(s) 173
BsmAI GTCTC 1 cut(s) 120
BsmI GAATGC 1 cut(s) 10
Bso31I GGTCTC 1 cut(s) 120
Bsp1286I GDGCHC 1 cut(s) 214
Bsp143I GATC 1 cut(s) 235
Bsp1720I GCTNAGC 1 cut(s) 83
BspACI CCGC 1 cut(s) 8
BspCNI CTCAG 1 cut(s) 75
BspTNI GGTCTC 1 cut(s) 120
BsrFI RCCGGY 1 cut(s) 172
BsrI ACTGG 1 cut(s) 70
BssAI RCCGGY 1 cut(s) 172
BssECI CCNNGG 1 cut(s) 110
BssMI GATC 1 cut(s) 235
BssT1I CCWWGG 1 cut(s) 110
Bst2UI CCWGG 1 cut(s) 191
Bst4CI ACNGT 1 cut(s) 187
BstBAI YACGTR 1 cut(s) 18
BstDEI CTNAG 2 cut(s) 39, 83
BstKTI GATC 1 cut(s) 238
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 1 cut(s) 235
BstNI CCWGG 1 cut(s) 191
BstSCI CCNGG 1 cut(s) 189
BstV1I GCAGC 1 cut(s) 99
BstXI CCANNNNNNTGG 1 cut(s) 190
Cfr10I RCCGGY 1 cut(s) 172
Csp6I GTAC 1 cut(s) 19
CspAI ACCGGT 1 cut(s) 172
CviAII CATG 1 cut(s) 239
CviJI RGCY 3 cut(s) 82, 90, 212
CviKI_1 RGCY 3 cut(s) 82, 90, 212
CviQI GTAC 1 cut(s) 19
DdeI CTNAG 2 cut(s) 39, 83
DpnI GATC 1 cut(s) 237
DpnII GATC 1 cut(s) 235
Eco130I CCWWGG 1 cut(s) 110
Eco24I GRGCYC 1 cut(s) 214
Eco31I GGTCTC 1 cut(s) 120
EcoRI GAATTC 1 cut(s) 244
EcoRII CCWGG 1 cut(s) 189
EcoT14I CCWWGG 1 cut(s) 110
EcoT38I GRGCYC 1 cut(s) 214
ErhI CCWWGG 1 cut(s) 110
FaeI CATG 1 cut(s) 242
FaiI YATR 2 cut(s) 232, 240
FatI CATG 1 cut(s) 238
FbaI TGATCA 1 cut(s) 235
Fnu4HI GCNGC 1 cut(s) 88
FriOI GRGCYC 1 cut(s) 214
Fsp4HI GCNGC 1 cut(s) 88
GluI GCNGC 1 cut(s) 88
HapII CCGG 1 cut(s) 173
Hin1II CATG 1 cut(s) 242
HinfI GANTC 1 cut(s) 50
HpaII CCGG 1 cut(s) 173
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 1 cut(s) 250
Hpy188III TCNNGA 1 cut(s) 97
Hpy8I GTNNAC 1 cut(s) 178
HpyAV CCTTC 3 cut(s) 52, 103, 201
HpyCH4III ACNGT 1 cut(s) 187
HpyCH4IV ACGT 1 cut(s) 17
HpyF3I CTNAG 2 cut(s) 39, 83
HpySE526I ACGT 1 cut(s) 17
Hsp92II CATG 1 cut(s) 242
Ksp22I TGATCA 1 cut(s) 235
Kzo9I GATC 1 cut(s) 235
LmnI GCTCC 1 cut(s) 95
LpnPI CCDG 4 cut(s) 51, 176, 186, 203
Lsp1109I GCAGC 1 cut(s) 99
MaeII ACGT 1 cut(s) 17
MaeIII GTNAC 1 cut(s) 193
MalI GATC 1 cut(s) 237
MboI GATC 1 cut(s) 235
MhlI GDGCHC 1 cut(s) 214
MluCI AATT 3 cut(s) 34, 76, 244
MroXI GAANNNNTTC 1 cut(s) 104
MspI CCGG 1 cut(s) 173
MspR9I CCNGG 1 cut(s) 191
Mva1269I GAATGC 1 cut(s) 10
MvaI CCWGG 1 cut(s) 191
NdeII GATC 1 cut(s) 235
NlaIII CATG 1 cut(s) 242
PctI GAATGC 1 cut(s) 10
PdmI GAANNNNTTC 1 cut(s) 104
PfeI GAWTC 1 cut(s) 50
PinAI ACCGGT 1 cut(s) 172
PkrI GCNGC 1 cut(s) 89
Ppu21I YACGTR 1 cut(s) 18
Psp6I CCWGG 1 cut(s) 189
PspGI CCWGG 1 cut(s) 189
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
SatI GCNGC 1 cut(s) 88
Sau3AI GATC 1 cut(s) 235
ScrFI CCNGG 1 cut(s) 191
SduI GDGCHC 1 cut(s) 214
SetI ASST 3 cut(s) 20, 92, 257
SgeI CNNG 9 cut(s) 28, 78, 109, 123, 185, 202, 203, 235, 251
Sse9I AATT 3 cut(s) 34, 76, 244
SsiI CCGC 1 cut(s) 8
StyD4I CCNGG 1 cut(s) 189
StyI CCWWGG 1 cut(s) 110
TaaI ACNGT 1 cut(s) 187
TaiI ACGT 1 cut(s) 20
TasI AATT 3 cut(s) 34, 76, 244
TfiI GAWTC 1 cut(s) 50
TseI GCWGC 1 cut(s) 87
TspDTI ATGAA 2 cut(s) 17, 71
XapI RAATTY 2 cut(s) 34, 244
XmnI GAANNNNTTC 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.