pycom15g15010

Calmodulin-like protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Forward (+)
10410448 .. 10410767
320 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 243 bp
ATGAATAGTATTCATCCGCAGCCAAAAGTAGAAGATCGGGCGGCGGAGCTGAAGCAAGTGTTTGCCACCTTCGACAAGAACAGTGATGGGTTCATCACAACGGAGGAGCTCAAGGAGTCACTGAAGAACATAAGAATTTTTATGAGTGATGCGGAGGACCATGCGCCGTCGGGAAGATGGGGGAGGAGCGGAGGAGGAGGAGGAGGAGGAGGAGGAGTTGAAGGAGGCTTTTGGTGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

81

Amino Acids

8.57

Weight (kDa)

5.23

Isoelectric Point (pI)

68.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_1 PF00036 16 - 43 9.9e-08 EF hand domain
EF-hand_6 PF13405 16 - 43 3.8e-07 EF-hand domain
EF-hand_7 PF13499 16 - 51 1.6e-06 EF-hand domain pair
EF-hand_5 PF13202 17 - 39 1.8e-06 EF hand
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 189
AciI CCGC 5 cut(s) 17, 41, 44, 152, 189
AcsI RAATTY 1 cut(s) 135
AcuI CTGAAG 2 cut(s) 71, 143
AgsI TTSAA 1 cut(s) 221
AluBI AGCT 2 cut(s) 49, 109
AluI AGCT 2 cut(s) 49, 109
Alw21I GWGCWC 1 cut(s) 111
ApeKI GCWGC 1 cut(s) 19
ApoI RAATTY 1 cut(s) 135
AspLEI GCGC 1 cut(s) 166
AspS9I GGNCC 1 cut(s) 157
AvaII GGWCC 1 cut(s) 157
BanII GRGCYC 1 cut(s) 111
Bbv12I GWGCWC 1 cut(s) 111
BbvI GCAGC 1 cut(s) 31
BccI CCATC 2 cut(s) 80, 171
BceAI ACGGC 1 cut(s) 151
BisI GCNGC 2 cut(s) 20, 42
BlsI GCNGC 2 cut(s) 21, 43
Bme18I GGWCC 1 cut(s) 157
BmgT120I GGNCC 1 cut(s) 157
BmsI GCATC 1 cut(s) 139
BpuEI CTTGAG 1 cut(s) 95
BsaXI ACNNNNNCTCC 2 cut(s) 201, 231
BseGI GGATG 1 cut(s) 13
BseXI GCAGC 1 cut(s) 31
BsiHKAI GWGCWC 1 cut(s) 111
Bsp1286I GDGCHC 1 cut(s) 111
Bsp143I GATC 1 cut(s) 34
BspACI CCGC 5 cut(s) 17, 41, 44, 152, 189
BsrBI CCGCTC 1 cut(s) 189
BssMI GATC 1 cut(s) 34
Bst4CI ACNGT 1 cut(s) 83
BstF5I GGATG 1 cut(s) 13
BstHHI GCGC 1 cut(s) 166
BstKTI GATC 1 cut(s) 37
BstMBI GATC 1 cut(s) 34
BstV1I GCAGC 1 cut(s) 31
BtsCI GGATG 1 cut(s) 13
BtsIMutI CAGTG 2 cut(s) 88, 119
CfoI GCGC 1 cut(s) 166
Cfr13I GGNCC 1 cut(s) 157
CviAII CATG 1 cut(s) 161
CviJI RGCY 4 cut(s) 22, 49, 109, 228
CviKI_1 RGCY 4 cut(s) 22, 49, 109, 228
DpnI GATC 1 cut(s) 36
DpnII GATC 1 cut(s) 34
EciI GGCGGA 1 cut(s) 59
Ecl136II GAGCTC 1 cut(s) 109
Eco24I GRGCYC 1 cut(s) 111
Eco47I GGWCC 1 cut(s) 157
Eco53kI GAGCTC 1 cut(s) 109
Eco57I CTGAAG 2 cut(s) 71, 143
EcoICRI GAGCTC 1 cut(s) 109
EcoT38I GRGCYC 1 cut(s) 111
FaeI CATG 1 cut(s) 164
FaiI YATR 3 cut(s) 131, 143, 162
FatI CATG 1 cut(s) 160
Fnu4HI GCNGC 2 cut(s) 20, 42
FriOI GRGCYC 1 cut(s) 111
Fsp4HI GCNGC 2 cut(s) 20, 42
GlaI GCGC 1 cut(s) 165
GluI GCNGC 2 cut(s) 20, 42
HhaI GCGC 1 cut(s) 166
Hin1II CATG 1 cut(s) 164
Hin6I GCGC 1 cut(s) 164
HinP1I GCGC 1 cut(s) 164
HinfI GANTC 1 cut(s) 116
Hpy188III TCNNGA 1 cut(s) 171
Hpy99I CGWCG 1 cut(s) 172
HpyAV CCTTC 2 cut(s) 79, 215
HpyCH4III ACNGT 1 cut(s) 83
Hsp92II CATG 1 cut(s) 164
HspAI GCGC 1 cut(s) 164
Kzo9I GATC 1 cut(s) 34
LmnI GCTCC 3 cut(s) 46, 106, 186
Lsp1109I GCAGC 1 cut(s) 31
LweI GCATC 1 cut(s) 139
MaeIII GTNAC 1 cut(s) 117
MalI GATC 1 cut(s) 36
MbiI CCGCTC 1 cut(s) 189
MboI GATC 1 cut(s) 34
MboII GAAGA 3 cut(s) 44, 136, 186
MhlI GDGCHC 1 cut(s) 111
MluCI AATT 1 cut(s) 135
MlyI GAGTC 1 cut(s) 125
NdeII GATC 1 cut(s) 34
NlaIII CATG 1 cut(s) 164
NmuCI GTSAC 1 cut(s) 117
PkrI GCNGC 2 cut(s) 21, 43
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
Psp124BI GAGCTC 1 cut(s) 111
PspPI GGNCC 1 cut(s) 157
SacI GAGCTC 1 cut(s) 111
SatI GCNGC 2 cut(s) 20, 42
Sau3AI GATC 1 cut(s) 34
Sau96I GGNCC 1 cut(s) 157
SchI GAGTC 1 cut(s) 125
SduI GDGCHC 1 cut(s) 111
SetI ASST 3 cut(s) 51, 71, 111
SfaNI GCATC 1 cut(s) 139
SgeI CNNG 6 cut(s) 50, 68, 88, 124, 173, 183
SinI GGWCC 1 cut(s) 157
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 1 cut(s) 135
SsiI CCGC 5 cut(s) 17, 41, 44, 152, 189
SstI GAGCTC 1 cut(s) 111
TaaI ACNGT 1 cut(s) 83
TaqI TCGA 1 cut(s) 72
TasI AATT 1 cut(s) 135
TauI GCSGC 1 cut(s) 44
TscAI CASTG 2 cut(s) 88, 126
TseFI GTSAC 1 cut(s) 117
TseI GCWGC 1 cut(s) 19
Tsp45I GTSAC 1 cut(s) 117
TspDTI ATGAA 2 cut(s) 17, 82
TspGWI ACGGA 1 cut(s) 116
TspRI CASTG 2 cut(s) 88, 126
VpaK11BI GGWCC 1 cut(s) 157
XapI RAATTY 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.