pycom15g15160

Plastocyanin-like domain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Reverse (-)
10520038 .. 10520319
282 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 282 bp
ATGACCAGCAGCCCGGTGTATGTAGATCTTCTTTCTAATGGTTGTCGCTACTTCATCTCTTCCGTTGGTGAGAACTGCGAGTGGGGTCAAAAGGTCACTCTCACCATCGGATCAGCCAACGCCTACTCTCCTCCTTCCGCTCCTCCACCGGCCTCCCATGCTTCCTCACTGCGAAGTACTGTTGGCTTTTTAATTGAGGTCGTGATCTCCGGAATATGTCAATTCTTTCTTCTTTTTATTTTGGTTTGTAATCATTTCTTTCTTCACTTAATTACATGTTAA

Protein Analysis

94

Amino Acids

10.07

Weight (kDa)

6.22

Isoelectric Point (pI)

37.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 140
AccIII TCCGGA 1 cut(s) 209
AciI CCGC 1 cut(s) 138
AclWI GGATC 1 cut(s) 118
AfaI GTAC 1 cut(s) 178
AflIII ACRYGT 1 cut(s) 275
AlwI GGATC 1 cut(s) 118
Aor13HI TCCGGA 1 cut(s) 209
AoxI GGCC 1 cut(s) 150
ApeKI GCWGC 1 cut(s) 9
AsuC2I CCSGG 1 cut(s) 14
AsuHPI GGTGA 2 cut(s) 80, 94
BbvI GCAGC 1 cut(s) 21
BccI CCATC 1 cut(s) 113
BcnI CCSGG 1 cut(s) 14
BglII AGATCT 1 cut(s) 25
BisI GCNGC 1 cut(s) 10
BlsI GCNGC 1 cut(s) 11
BmcAI AGTACT 1 cut(s) 178
Bme1390I CCNGG 1 cut(s) 14
BmrFI CCNGG 1 cut(s) 14
BpuMI CCSGG 1 cut(s) 14
BsaWI WCCGGW 1 cut(s) 209
Bse118I RCCGGY 1 cut(s) 148
BseAI TCCGGA 1 cut(s) 209
BseRI GAGGAG 2 cut(s) 120, 132
BseXI GCAGC 1 cut(s) 21
BshFI GGCC 1 cut(s) 152
BsiSI CCGG 3 cut(s) 14, 149, 210
BsnI GGCC 1 cut(s) 152
Bsp13I TCCGGA 1 cut(s) 209
Bsp143I GATC 3 cut(s) 25, 110, 204
BspACI CCGC 1 cut(s) 138
BspANI GGCC 1 cut(s) 152
BspEI TCCGGA 1 cut(s) 209
BspPI GGATC 1 cut(s) 118
BsrBI CCGCTC 1 cut(s) 140
BsrFI RCCGGY 1 cut(s) 148
BssAI RCCGGY 1 cut(s) 148
BssMI GATC 3 cut(s) 25, 110, 204
Bst4CI ACNGT 1 cut(s) 181
Bst6I CTCTTC 1 cut(s) 64
BstKTI GATC 3 cut(s) 28, 113, 207
BstMBI GATC 3 cut(s) 25, 110, 204
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstNSI RCATGY 1 cut(s) 279
BstSCI CCNGG 1 cut(s) 12
BstV1I GCAGC 1 cut(s) 21
BstX2I RGATCY 1 cut(s) 25
BstYI RGATCY 1 cut(s) 25
BsuRI GGCC 1 cut(s) 152
BtsI GCAGTG 1 cut(s) 167
BtsIMutI CAGTG 1 cut(s) 167
Cfr10I RCCGGY 1 cut(s) 148
Csp6I GTAC 1 cut(s) 177
CviAII CATG 2 cut(s) 158, 276
CviJI RGCY 4 cut(s) 12, 116, 152, 186
CviKI_1 RGCY 4 cut(s) 12, 116, 152, 186
CviQI GTAC 1 cut(s) 177
DpnI GATC 3 cut(s) 27, 112, 206
DpnII GATC 3 cut(s) 25, 110, 204
Eam1104I CTCTTC 1 cut(s) 64
EarI CTCTTC 1 cut(s) 64
FaeI CATG 2 cut(s) 161, 279
FaiI YATR 4 cut(s) 21, 159, 217, 277
FatI CATG 2 cut(s) 157, 275
Fnu4HI GCNGC 1 cut(s) 10
Fsp4HI GCNGC 1 cut(s) 10
GluI GCNGC 1 cut(s) 10
HaeIII GGCC 1 cut(s) 152
HapII CCGG 3 cut(s) 14, 149, 210
Hin1II CATG 2 cut(s) 161, 279
HpaII CCGG 3 cut(s) 14, 149, 210
HphI GGTGA 2 cut(s) 80, 94
Hpy188I TCNGA 1 cut(s) 110
Hpy188III TCNNGA 2 cut(s) 202, 210
HpyAV CCTTC 1 cut(s) 144
HpyCH4III ACNGT 1 cut(s) 181
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
Hsp92II CATG 2 cut(s) 161, 279
Kpn2I TCCGGA 1 cut(s) 209
Kzo9I GATC 3 cut(s) 25, 110, 204
LmnI GCTCC 1 cut(s) 145
LpnPI CCDG 4 cut(s) 19, 27, 162, 223
Lsp1109I GCAGC 1 cut(s) 21
MaeIII GTNAC 1 cut(s) 94
MalI GATC 3 cut(s) 27, 112, 206
MbiI CCGCTC 1 cut(s) 140
MboI GATC 3 cut(s) 25, 110, 204
MboII GAAGA 4 cut(s) 20, 51, 221, 254
MflI RGATCY 1 cut(s) 25
MluCI AATT 3 cut(s) 192, 221, 270
MnlI CCTC 5 cut(s) 141, 153, 163, 175, 190
MroI TCCGGA 1 cut(s) 209
MseI TTAA 3 cut(s) 191, 269, 280
MspI CCGG 3 cut(s) 14, 149, 210
MspR9I CCNGG 1 cut(s) 14
MwoI GCNNNNNNNGC 1 cut(s) 158
NciI CCSGG 1 cut(s) 14
NdeII GATC 3 cut(s) 25, 110, 204
NlaIII CATG 2 cut(s) 161, 279
NmuCI GTSAC 1 cut(s) 94
NspI RCATGY 1 cut(s) 279
PciI ACATGT 1 cut(s) 275
PkrI GCNGC 1 cut(s) 11
PscI ACATGT 1 cut(s) 275
PsuI RGATCY 1 cut(s) 25
RsaI GTAC 1 cut(s) 178
RsaNI GTAC 1 cut(s) 177
SaqAI TTAA 3 cut(s) 191, 269, 280
SatI GCNGC 1 cut(s) 10
Sau3AI GATC 3 cut(s) 25, 110, 204
ScaI AGTACT 1 cut(s) 178
ScrFI CCNGG 1 cut(s) 14
SetI ASST 2 cut(s) 96, 201
SgeI CNNG 8 cut(s) 18, 25, 26, 91, 161, 170, 214, 222
Sse9I AATT 3 cut(s) 192, 221, 270
SsiI CCGC 1 cut(s) 138
StyD4I CCNGG 1 cut(s) 12
TaaI ACNGT 1 cut(s) 181
TasI AATT 3 cut(s) 192, 221, 270
TatI WGTACW 1 cut(s) 176
Tru1I TTAA 3 cut(s) 191, 269, 280
Tru9I TTAA 3 cut(s) 191, 269, 280
TscAI CASTG 1 cut(s) 174
TseFI GTSAC 1 cut(s) 94
TseI GCWGC 1 cut(s) 9
Tsp45I GTSAC 1 cut(s) 94
TspDTI ATGAA 1 cut(s) 43
TspGWI ACGGA 1 cut(s) 52
TspRI CASTG 1 cut(s) 174
XceI RCATGY 1 cut(s) 279
ZrmI AGTACT 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.