pycom15g15360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Reverse (-)
10695382 .. 10696019
638 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 534 bp
ATGTTGTTCTCCCACTGCAACCACCATAACTATTTATCTCCCCTTCGCCCCACTCCCCCCACCCCCCCCCCCCCCCCTCCCTCCCTCTGCCCCCATTATATTATACCACGATTCATACTCCCACACTTGTCTCTCCCTCTTTCATCCAAACTCTACTTCTTTCTGCTTTCTGTTTCTTTTATCTGCCTCCAAATCCCAATTGGGTTTTCTGTTTCTTCCTACTTCTTGGTTTTCTTGCAGAAAAAGATCATGTCTTCAGTGCTGGGCTCTCAAGGGGTGGTTTTGGCCACCGCCATGGCGGTTTCCGGCACCGTCATCCTCCTCGCCCTCCGCCTCCAGAAGTCCCTACCCAATTCTCACGGATACCCAGTTGATCAAATTACCCATCAGTCCTCCCCTCAAATTCTACAAGTTGATCCTGTATATCTTCTGATGGAAAGAAGAGGAGGAAGAAGAACAAGAGGGTGCACTTTGCAGAGGACGTCGTGGATCCGATTGGAGACAATCAGGAGTTTAGACGGCAGCACCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPI_Ypi1

Protein Analysis

178

Amino Acids

19.82

Weight (kDa)

10.19

Isoelectric Point (pI)

67.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 485
AccB1I GGYRCC 1 cut(s) 308
AciI CCGC 3 cut(s) 291, 299, 331
AclWI GGATC 3 cut(s) 410, 484, 497
AcoI YGGCCR 1 cut(s) 285
AcsI RAATTY 1 cut(s) 402
AcuI CTGAAG 1 cut(s) 240
AcyI GRCGYC 1 cut(s) 482
AjuI GAANNNNNNNTTGG 4 cut(s) 140, 172, 190, 222
Alw21I GWGCWC 1 cut(s) 470
Alw26I GTCTC 2 cut(s) 135, 494
Alw44I GTGCAC 1 cut(s) 466
AlwI GGATC 3 cut(s) 410, 484, 497
AoxI GGCC 1 cut(s) 285
ApaLI GTGCAC 1 cut(s) 466
ApeKI GCWGC 1 cut(s) 522
ApoI RAATTY 1 cut(s) 402
BaeGI GKGCMC 1 cut(s) 470
BalI TGGCCA 1 cut(s) 287
BamHI GGATCC 1 cut(s) 489
BanI GGYRCC 1 cut(s) 308
BanII GRGCYC 1 cut(s) 269
BbsI GAAGAC 1 cut(s) 246
Bbv12I GWGCWC 1 cut(s) 470
BccI CCATC 2 cut(s) 393, 427
BciVI GTATCC 1 cut(s) 356
BclI TGATCA 1 cut(s) 373
BcoDI GTCTC 2 cut(s) 135, 494
BfuI GTATCC 1 cut(s) 356
BisI GCNGC 1 cut(s) 523
BlsI GCNGC 1 cut(s) 524
BmiI GGNNCC 2 cut(s) 310, 491
BmrI ACTGGG 1 cut(s) 362
BmuI ACTGGG 1 cut(s) 362
BpiI GAAGAC 1 cut(s) 246
BpmI CTGGAG 1 cut(s) 320
BpuEI CTTGAG 1 cut(s) 255
BsaHI GRCGYC 1 cut(s) 482
BsaJI CCNNGG 1 cut(s) 294
Bse1I ACTGG 1 cut(s) 368
BseDI CCNNGG 1 cut(s) 294
BseGI GGATG 2 cut(s) 143, 315
BseNI ACTGG 1 cut(s) 368
BseRI GAGGAG 2 cut(s) 311, 459
BseSI GKGCMC 1 cut(s) 470
BseYI CCCAGC 1 cut(s) 262
BshFI GGCC 1 cut(s) 287
BshNI GGYRCC 1 cut(s) 308
BsiHKAI GWGCWC 1 cut(s) 470
BsiSI CCGG 1 cut(s) 306
BslFI GGGAC 1 cut(s) 328
BsmAI GTCTC 2 cut(s) 135, 494
BsmFI GGGAC 1 cut(s) 328
BsnI GGCC 1 cut(s) 287
Bsp1286I GDGCHC 2 cut(s) 269, 470
Bsp143I GATC 4 cut(s) 246, 373, 415, 489
Bsp19I CCATGG 1 cut(s) 294
BspACI CCGC 3 cut(s) 291, 299, 331
BspANI GGCC 1 cut(s) 287
BspLI GGNNCC 2 cut(s) 310, 491
BspPI GGATC 3 cut(s) 410, 484, 497
BspT107I GGYRCC 1 cut(s) 308
BsrI ACTGG 1 cut(s) 368
BssECI CCNNGG 1 cut(s) 294
BssMI GATC 4 cut(s) 246, 373, 415, 489
BssNI GRCGYC 1 cut(s) 482
BssT1I CCWWGG 1 cut(s) 294
Bst4CI ACNGT 1 cut(s) 313
Bst6I CTCTTC 1 cut(s) 436
BstACI GRCGYC 1 cut(s) 482
BstDSI CCRYGG 1 cut(s) 294
BstF5I GGATG 2 cut(s) 143, 315
BstKTI GATC 4 cut(s) 249, 376, 418, 492
BstMAI GTCTC 2 cut(s) 135, 494
BstMBI GATC 4 cut(s) 246, 373, 415, 489
BstSLI GKGCMC 1 cut(s) 470
BstV2I GAAGAC 1 cut(s) 246
BstX2I RGATCY 1 cut(s) 489
BstXI CCANNNNNNTGG 1 cut(s) 295
BstYI RGATCY 1 cut(s) 489
BsuI GTATCC 1 cut(s) 356
BsuRI GGCC 1 cut(s) 287
BtgI CCRYGG 1 cut(s) 294
BtsCI GGATG 2 cut(s) 143, 315
BtsI GCAGTG 1 cut(s) 13
BtsIMutI CAGTG 2 cut(s) 13, 264
CviAII CATG 2 cut(s) 250, 295
CviJI RGCY 2 cut(s) 267, 287
CviKI_1 RGCY 2 cut(s) 267, 287
DpnI GATC 4 cut(s) 248, 375, 417, 491
DpnII GATC 4 cut(s) 246, 373, 415, 489
EaeI YGGCCR 1 cut(s) 285
Eam1104I CTCTTC 1 cut(s) 436
EarI CTCTTC 1 cut(s) 436
EciI GGCGGA 1 cut(s) 320
Eco130I CCWWGG 1 cut(s) 294
Eco24I GRGCYC 1 cut(s) 269
Eco57I CTGAAG 1 cut(s) 240
EcoT14I CCWWGG 1 cut(s) 294
EcoT38I GRGCYC 1 cut(s) 269
ErhI CCWWGG 1 cut(s) 294
FaeI CATG 2 cut(s) 253, 298
FaiI YATR 7 cut(s) 27, 99, 104, 116, 251, 296, 424
FaqI GGGAC 1 cut(s) 328
FatI CATG 2 cut(s) 249, 294
FbaI TGATCA 1 cut(s) 373
Fnu4HI GCNGC 1 cut(s) 523
FokI GGATG 2 cut(s) 130, 302
FriOI GRGCYC 1 cut(s) 269
Fsp4HI GCNGC 1 cut(s) 523
GluI GCNGC 1 cut(s) 523
GsaI CCCAGC 1 cut(s) 266
GsuI CTGGAG 1 cut(s) 320
HaeIII GGCC 1 cut(s) 287
HapII CCGG 1 cut(s) 306
Hin1I GRCGYC 1 cut(s) 482
Hin1II CATG 2 cut(s) 253, 298
HinfI GANTC 1 cut(s) 111
HpaII CCGG 1 cut(s) 306
Hpy166II GTNNAC 1 cut(s) 468
Hpy188I TCNGA 2 cut(s) 432, 494
Hpy188III TCNNGA 2 cut(s) 337, 508
Hpy8I GTNNAC 1 cut(s) 468
Hpy99I CGWCG 1 cut(s) 487
HpyAV CCTTC 1 cut(s) 53
HpyCH4III ACNGT 1 cut(s) 313
HpyCH4IV ACGT 1 cut(s) 482
HpyCH4V TGCA 4 cut(s) 18, 238, 468, 475
HpySE526I ACGT 1 cut(s) 482
Hsp92I GRCGYC 1 cut(s) 482
Hsp92II CATG 2 cut(s) 253, 298
Ksp22I TGATCA 1 cut(s) 373
Kzo9I GATC 4 cut(s) 246, 373, 415, 489
LpnPI CCDG 6 cut(s) 248, 319, 350, 381, 432, 493
MaeII ACGT 1 cut(s) 482
MalI GATC 4 cut(s) 248, 375, 417, 491
MboI GATC 4 cut(s) 246, 373, 415, 489
MboII GAAGA 6 cut(s) 207, 246, 419, 453, 462, 465
MfeI CAATTG 1 cut(s) 198
MflI RGATCY 1 cut(s) 489
MhlI GDGCHC 2 cut(s) 269, 470
MlsI TGGCCA 1 cut(s) 287
MluCI AATT 4 cut(s) 198, 352, 378, 402
MluNI TGGCCA 1 cut(s) 287
Mox20I TGGCCA 1 cut(s) 287
MscI TGGCCA 1 cut(s) 287
MslI CAYNNNNRTG 1 cut(s) 293
Msp20I TGGCCA 1 cut(s) 287
MspI CCGG 1 cut(s) 306
MunI CAATTG 1 cut(s) 198
NcoI CCATGG 1 cut(s) 294
NdeII GATC 4 cut(s) 246, 373, 415, 489
NlaIII CATG 2 cut(s) 253, 298
NlaIV GGNNCC 2 cut(s) 310, 491
PfeI GAWTC 1 cut(s) 111
PkrI GCNGC 1 cut(s) 524
PspFI CCCAGC 1 cut(s) 262
PspN4I GGNNCC 2 cut(s) 310, 491
PsuI RGATCY 1 cut(s) 489
RseI CAYNNNNRTG 1 cut(s) 293
SatI GCNGC 1 cut(s) 523
Sau3AI GATC 4 cut(s) 246, 373, 415, 489
SduI GDGCHC 2 cut(s) 269, 470
SetI ASST 1 cut(s) 485
SmiMI CAYNNNNRTG 1 cut(s) 293
SmlI CTYRAG 1 cut(s) 270
SmoI CTYRAG 1 cut(s) 270
Sse9I AATT 4 cut(s) 198, 352, 378, 402
SsiI CCGC 3 cut(s) 291, 299, 331
StyI CCWWGG 1 cut(s) 294
TaaI ACNGT 1 cut(s) 313
TaiI ACGT 1 cut(s) 485
TasI AATT 4 cut(s) 198, 352, 378, 402
TfiI GAWTC 1 cut(s) 111
TscAI CASTG 2 cut(s) 20, 264
TseI GCWGC 1 cut(s) 522
TspDTI ATGAA 2 cut(s) 103, 132
TspGWI ACGGA 1 cut(s) 375
TspRI CASTG 2 cut(s) 20, 264
VneI GTGCAC 1 cut(s) 466
XapI RAATTY 1 cut(s) 402
XcmI CCANNNNNNNNNTGG 1 cut(s) 197
ZraI GACGTC 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.