pycom15g15520

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Forward (+)
10801514 .. 10801777
264 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 264 bp
ATGTACAACACCATGATCAGAGGATACGTTCAGTCGCATTTGCCGATTCCCGCCATTTCGTGCTATTTGGACATGTTGAATTATGGGTTTGTTCCGAAAAACTACACTTTTTCCGCCGTTGATCAAAGCGTGCACGATTCTCGGCCCAAATTTGAAGCTCAGTGGTCGATTAGTTCATGTTCATGTAGTTCAATTCGAGTATGGTGGCGACTCTTGTTCTTTAGCTCGCTGGTCGAGTTTTATGCCGTTATCCATGACTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

88

Amino Acids

10.17

Weight (kDa)

6.8

Isoelectric Point (pI)

56.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 262
AciI CCGC 2 cut(s) 51, 114
AcsI RAATTY 1 cut(s) 149
AfaI GTAC 1 cut(s) 5
AflIII ACRYGT 1 cut(s) 72
AgsI TTSAA 3 cut(s) 79, 155, 192
AluBI AGCT 2 cut(s) 158, 225
AluI AGCT 2 cut(s) 158, 225
Alw21I GWGCWC 1 cut(s) 135
Alw44I GTGCAC 1 cut(s) 131
AoxI GGCC 1 cut(s) 143
ApaLI GTGCAC 1 cut(s) 131
ApoI RAATTY 1 cut(s) 149
AspS9I GGNCC 1 cut(s) 144
BaeGI GKGCMC 1 cut(s) 135
Bbv12I GWGCWC 1 cut(s) 135
BceAI ACGGC 2 cut(s) 101, 230
BcgI CGANNNNNNTGC 4 cut(s) 122, 156, 224, 258
BciVI GTATCC 1 cut(s) 17
BclI TGATCA 2 cut(s) 15, 121
BfuI GTATCC 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 144
BseMII CTCAG 1 cut(s) 173
BseSI GKGCMC 1 cut(s) 135
BshFI GGCC 1 cut(s) 145
BsiHKAI GWGCWC 1 cut(s) 135
BsnI GGCC 1 cut(s) 145
Bsp1286I GDGCHC 1 cut(s) 135
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 2 cut(s) 15, 121
BspACI CCGC 2 cut(s) 51, 114
BspANI GGCC 1 cut(s) 145
BspCNI CTCAG 1 cut(s) 172
BsrGI TGTACA 1 cut(s) 3
BssMI GATC 2 cut(s) 15, 121
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 2 cut(s) 131, 227
BstDEI CTNAG 1 cut(s) 159
BstKTI GATC 2 cut(s) 18, 124
BstMBI GATC 2 cut(s) 15, 121
BstNSI RCATGY 1 cut(s) 76
BstSLI GKGCMC 1 cut(s) 135
BsuI GTATCC 1 cut(s) 17
BsuRI GGCC 1 cut(s) 145
BtsIMutI CAGTG 1 cut(s) 167
Cac8I GCNNGC 2 cut(s) 131, 227
Cfr13I GGNCC 1 cut(s) 144
Csp6I GTAC 1 cut(s) 4
CviAII CATG 5 cut(s) 13, 73, 177, 183, 254
CviJI RGCY 3 cut(s) 145, 158, 225
CviKI_1 RGCY 3 cut(s) 145, 158, 225
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 1 cut(s) 159
DpnI GATC 2 cut(s) 17, 123
DpnII GATC 2 cut(s) 15, 121
EciI GGCGGA 1 cut(s) 103
FaeI CATG 5 cut(s) 16, 76, 180, 186, 257
FaiI YATR 9 cut(s) 14, 74, 84, 178, 184, 202, 243, 255, 262
FatI CATG 5 cut(s) 12, 72, 176, 182, 253
FauI CCCGC 1 cut(s) 58
FbaI TGATCA 2 cut(s) 15, 121
HaeIII GGCC 1 cut(s) 145
Hin1II CATG 5 cut(s) 16, 76, 180, 186, 257
HinfI GANTC 3 cut(s) 46, 137, 210
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 2 cut(s) 20, 96
Hpy8I GTNNAC 1 cut(s) 133
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 1 cut(s) 133
HpyF3I CTNAG 1 cut(s) 159
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 5 cut(s) 16, 76, 180, 186, 257
Ksp22I TGATCA 2 cut(s) 15, 121
Kzo9I GATC 2 cut(s) 15, 121
LpnPI CCDG 1 cut(s) 215
MaeII ACGT 1 cut(s) 27
MalI GATC 2 cut(s) 17, 123
MboI GATC 2 cut(s) 15, 121
MhlI GDGCHC 1 cut(s) 135
MluCI AATT 3 cut(s) 79, 149, 192
MlyI GAGTC 1 cut(s) 204
MnlI CCTC 1 cut(s) 14
MslI CAYNNNNRTG 1 cut(s) 181
NdeII GATC 2 cut(s) 15, 121
NlaIII CATG 5 cut(s) 16, 76, 180, 186, 257
NmeAIII GCCGAG 1 cut(s) 121
NspI RCATGY 1 cut(s) 76
PciI ACATGT 1 cut(s) 72
PcsI WCGNNNNNNNCGW 1 cut(s) 41
PfeI GAWTC 2 cut(s) 46, 137
PleI GAGTC 1 cut(s) 204
PpsI GAGTC 1 cut(s) 204
PscI ACATGT 1 cut(s) 72
PsiI TTATAA 1 cut(s) 262
PspPI GGNCC 1 cut(s) 144
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 1 cut(s) 181
Sau3AI GATC 2 cut(s) 15, 121
Sau96I GGNCC 1 cut(s) 144
SchI GAGTC 1 cut(s) 204
SduI GDGCHC 1 cut(s) 135
SetI ASST 3 cut(s) 30, 160, 227
SmiMI CAYNNNNRTG 1 cut(s) 181
Sse9I AATT 3 cut(s) 79, 149, 192
SsiI CCGC 2 cut(s) 51, 114
TaiI ACGT 1 cut(s) 30
TaqI TCGA 3 cut(s) 167, 196, 234
TasI AATT 3 cut(s) 79, 149, 192
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 2 cut(s) 46, 137
TscAI CASTG 1 cut(s) 167
TspDTI ATGAA 2 cut(s) 165, 171
TspRI CASTG 1 cut(s) 167
VneI GTGCAC 1 cut(s) 131
XapI RAATTY 1 cut(s) 149
XceI RCATGY 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.