pycom15g15980

Potassium channel

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Forward (+)
11141348 .. 11141863
516 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 321 bp
ATGCTTCGTCTTTGGCGTCTACGAAGAGTTAGTGCCCTATTTTCCAGATTGGAGAAAGATAGGAATTATAATTACTTTTGGGTTCGCTGTGCAAAACTTATTTGCGTCACTCTTTTTGCCATCCATTGTGCTGGATGCTTCTATTACCTTATAGCTGCACGCAATCATGACCCTGCGAAAACATGGATGGGAGTAGAAATCCTAGGACAAAGCCTGTGGATTCGGTATGTGACTGCAGTTTATTGGTCTATCACAACGCTAACAACAGTTGGATATGGAGACCTGCATCCAGTCAATGCACGGGAGATGATCGATCTTTGA

Protein Analysis

107

Amino Acids

12.51

Weight (kDa)

9.42

Isoelectric Point (pI)

35.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans PF00520 1 - 103 2e-19 Ion transport protein
Ion_trans_2 PF07885 38 - 99 2e-09 Ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 69
Acc36I ACCTGC 1 cut(s) 291
AccI GTMKAC 1 cut(s) 19
AcyI GRCGYC 1 cut(s) 16
AluBI AGCT 1 cut(s) 155
AluI AGCT 1 cut(s) 155
Alw26I GTCTC 1 cut(s) 273
ApeKI GCWGC 1 cut(s) 155
AspA2I CCTAGG 1 cut(s) 202
AvrII CCTAGG 1 cut(s) 202
BaeGI GKGCMC 1 cut(s) 37
BbvI GCAGC 1 cut(s) 142
BccI CCATC 2 cut(s) 128, 181
BcoDI GTCTC 1 cut(s) 273
BfaI CTAG 1 cut(s) 203
BfmI CTRYAG 1 cut(s) 234
BfuAI ACCTGC 1 cut(s) 291
BisI GCNGC 1 cut(s) 156
BlnI CCTAGG 1 cut(s) 202
BlsI GCNGC 1 cut(s) 157
BmsI GCATC 2 cut(s) 125, 295
Bsa29I ATCGAT 1 cut(s) 312
BsaHI GRCGYC 1 cut(s) 16
BsaI GGTCTC 1 cut(s) 273
BsaJI CCNNGG 1 cut(s) 202
Bse1I ACTGG 1 cut(s) 290
BseCI ATCGAT 1 cut(s) 312
BseDI CCNNGG 1 cut(s) 202
BseGI GGATG 4 cut(s) 120, 140, 192, 286
BseNI ACTGG 1 cut(s) 290
BseSI GKGCMC 1 cut(s) 37
BseXI GCAGC 1 cut(s) 142
BsgI GTGCAG 1 cut(s) 141
BshVI ATCGAT 1 cut(s) 312
BsmAI GTCTC 1 cut(s) 273
Bso31I GGTCTC 1 cut(s) 273
Bsp1286I GDGCHC 1 cut(s) 37
Bsp143I GATC 2 cut(s) 309, 313
BspDI ATCGAT 1 cut(s) 312
BspHI TCATGA 1 cut(s) 166
BspMAI CTGCAG 1 cut(s) 238
BspMI ACCTGC 1 cut(s) 291
BspTNI GGTCTC 1 cut(s) 273
BsrI ACTGG 1 cut(s) 290
BssECI CCNNGG 1 cut(s) 202
BssMI GATC 2 cut(s) 309, 313
BssNI GRCGYC 1 cut(s) 16
BssT1I CCWWGG 1 cut(s) 202
Bst4CI ACNGT 1 cut(s) 268
Bst6I CTCTTC 1 cut(s) 19
BstACI GRCGYC 1 cut(s) 16
BstC8I GCNNGC 1 cut(s) 160
BstF5I GGATG 4 cut(s) 120, 140, 192, 286
BstKTI GATC 2 cut(s) 312, 316
BstMAI GTCTC 1 cut(s) 273
BstMBI GATC 2 cut(s) 309, 313
BstSFI CTRYAG 1 cut(s) 234
BstSLI GKGCMC 1 cut(s) 37
BstV1I GCAGC 1 cut(s) 142
BstXI CCANNNNNNTGG 1 cut(s) 131
Bsu15I ATCGAT 1 cut(s) 312
BsuTUI ATCGAT 1 cut(s) 312
BtsCI GGATG 4 cut(s) 120, 140, 192, 286
BveI ACCTGC 1 cut(s) 291
Cac8I GCNNGC 1 cut(s) 160
CciI TCATGA 1 cut(s) 166
ClaI ATCGAT 1 cut(s) 312
CseI GACGC 2 cut(s) 5, 94
CspCI CAANNNNNGTGG 2 cut(s) 197, 232
CviAII CATG 2 cut(s) 167, 183
CviJI RGCY 2 cut(s) 155, 213
CviKI_1 RGCY 2 cut(s) 155, 213
DpnI GATC 2 cut(s) 311, 315
DpnII GATC 2 cut(s) 309, 313
Eam1104I CTCTTC 1 cut(s) 19
EarI CTCTTC 1 cut(s) 19
Eco130I CCWWGG 1 cut(s) 202
Eco31I GGTCTC 1 cut(s) 273
EcoT14I CCWWGG 1 cut(s) 202
ErhI CCWWGG 1 cut(s) 202
FaeI CATG 2 cut(s) 170, 186
FaiI YATR 6 cut(s) 69, 152, 168, 184, 228, 276
FatI CATG 2 cut(s) 166, 182
FblI GTMKAC 1 cut(s) 19
Fnu4HI GCNGC 1 cut(s) 156
FokI GGATG 4 cut(s) 107, 147, 199, 273
Fsp4HI GCNGC 1 cut(s) 156
FspBI CTAG 1 cut(s) 203
GluI GCNGC 1 cut(s) 156
HgaI GACGC 2 cut(s) 5, 94
Hin1I GRCGYC 1 cut(s) 16
Hin1II CATG 2 cut(s) 170, 186
HinfI GANTC 1 cut(s) 220
Hpy166II GTNNAC 1 cut(s) 20
Hpy188III TCNNGA 2 cut(s) 45, 167
Hpy8I GTNNAC 1 cut(s) 20
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4V TGCA 5 cut(s) 92, 158, 236, 286, 299
Hsp92I GRCGYC 1 cut(s) 16
Hsp92II CATG 2 cut(s) 170, 186
Kzo9I GATC 2 cut(s) 309, 313
LpnPI CCDG 6 cut(s) 58, 117, 186, 227, 296, 303
Lsp1109I GCAGC 1 cut(s) 142
LweI GCATC 2 cut(s) 125, 295
MaeI CTAG 1 cut(s) 203
MaeIII GTNAC 2 cut(s) 106, 229
MalI GATC 2 cut(s) 311, 315
MboI GATC 2 cut(s) 309, 313
MboII GAAGA 1 cut(s) 36
MhlI GDGCHC 1 cut(s) 37
MluCI AATT 2 cut(s) 64, 70
MmeI TCCRAC 1 cut(s) 250
NdeII GATC 2 cut(s) 309, 313
NlaIII CATG 2 cut(s) 170, 186
NmuCI GTSAC 2 cut(s) 106, 229
PagI TCATGA 1 cut(s) 166
PcsI WCGNNNNNNNCGW 1 cut(s) 13
PfeI GAWTC 1 cut(s) 220
PkrI GCNGC 1 cut(s) 157
PsiI TTATAA 1 cut(s) 69
PstI CTGCAG 1 cut(s) 238
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 2 cut(s) 309, 313
SduI GDGCHC 1 cut(s) 37
SetI ASST 3 cut(s) 150, 157, 285
SfaNI GCATC 2 cut(s) 125, 295
SfcI CTRYAG 1 cut(s) 234
Sse9I AATT 2 cut(s) 64, 70
SspMI CTAG 1 cut(s) 203
StyI CCWWGG 1 cut(s) 202
TaaI ACNGT 1 cut(s) 268
TaqI TCGA 1 cut(s) 312
TasI AATT 2 cut(s) 64, 70
TfiI GAWTC 1 cut(s) 220
TseFI GTSAC 2 cut(s) 106, 229
TseI GCWGC 1 cut(s) 155
Tsp45I GTSAC 2 cut(s) 106, 229
XmaJI CCTAGG 1 cut(s) 202
XmiI GTMKAC 1 cut(s) 19
XspI CTAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.