pycom15g16080

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Forward (+)
11219480 .. 11222004
2525 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 702 bp
ATGCATGATTTGATTCGAGAAATGGACGAGACAATCAATTCTGAAAAATCTCCTACTCAACCTGGAAGATTGGAGGATCCTGAAGCCGTAACAATCGTGTTGACAAATGAATATCCGCGCGAAAATTTTGAAATCCTTGATCTCAGTGAATGCCGTCGGTCAAAAAACTTATCAATCCTCTCAAAATTGCTTACTTCAGCGAGTTTGTTCACGCCCATCGGTCAACTTAAAAAAATTTCGCTGTTACGGTCGTTGACAAACCTTAATTTGAGTAGTTGTTGTTTTTTAGGAGAGTTACAAGATTTTTCATGCTTCCCAAATCTCCAAGAATTGAAATTGCCTGGCTGTTGGAGTTTGTCCAATGTTCGCATTGGGCAACTTAAAAGACTTCATTTGGTAGAGTTTGATGACTGCCGACCGCTTAAGTATGACTGCGAACAGCTTAGGTATCTTCCAGGGGAAAATGTGAATGTGGACGCAATTTCATCAGTTAACATGGCAAATCCAGCAGAGTGGATCTTTCTAGTAAGTAGCCTTTGCTTGGAGATTTTATCAGCTGCTTGTGATCAGGTTTCTTCCCCAAGTAGGCCTCGGTATTCGCTGTTCGGTATGCTCTTTGCTATTGCAGCTCTTCTCACTTGCATATGGGAGCTGATTTACAAAGGTATTAGACTAATAGTCTCAGTACTCACTGCAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
FNIP LRR_8 NB-ARC

Protein Analysis

234

Amino Acids

26.26

Weight (kDa)

5.19

Isoelectric Point (pI)

50.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 118, 120
AciI CCGC 2 cut(s) 116, 419
AclWI GGATC 3 cut(s) 71, 84, 524
AcsI RAATTY 2 cut(s) 124, 234
AcuI CTGAAG 2 cut(s) 102, 180
AfaI GTAC 1 cut(s) 687
AfiI CCNNNNNNNGG 2 cut(s) 541, 585
AflII CTTAAG 1 cut(s) 422
AgsI TTSAA 2 cut(s) 131, 334
AhdI GACNNNNNGTC 1 cut(s) 677
AjnI CCWGG 3 cut(s) 61, 340, 454
AluBI AGCT 4 cut(s) 442, 557, 629, 652
AluI AGCT 4 cut(s) 442, 557, 629, 652
Alw26I GTCTC 2 cut(s) 23, 685
AlwI GGATC 3 cut(s) 71, 84, 524
AoxI GGCC 1 cut(s) 587
ApeKI GCWGC 2 cut(s) 557, 626
ApoI RAATTY 2 cut(s) 124, 234
AspLEI GCGC 1 cut(s) 120
BamHI GGATCC 1 cut(s) 76
BbvI GCAGC 2 cut(s) 544, 638
BccI CCATC 1 cut(s) 224
BceAI ACGGC 2 cut(s) 71, 138
BciT130I CCWGG 3 cut(s) 63, 342, 456
BclI TGATCA 1 cut(s) 565
BcoDI GTCTC 2 cut(s) 23, 685
BfaI CTAG 1 cut(s) 524
BfrI CTTAAG 1 cut(s) 422
BisI GCNGC 2 cut(s) 558, 627
BlsI GCNGC 2 cut(s) 559, 628
BmcAI AGTACT 1 cut(s) 687
Bme1390I CCNGG 3 cut(s) 63, 342, 456
BmeRI GACNNNNNGTC 1 cut(s) 677
BmiI GGNNCC 1 cut(s) 78
BmrFI CCNGG 3 cut(s) 63, 342, 456
Bpu10I CCTNAGC 1 cut(s) 443
BsaJI CCNNGG 2 cut(s) 455, 590
Bsc4I CCNNNNNNNGG 2 cut(s) 541, 585
BseBI CCWGG 3 cut(s) 63, 342, 456
BseDI CCNNGG 2 cut(s) 455, 590
BseLI CCNNNNNNNGG 2 cut(s) 541, 585
BseMII CTCAG 2 cut(s) 157, 696
BseXI GCAGC 2 cut(s) 544, 638
Bsh1236I CGCG 2 cut(s) 118, 120
Bsh1285I CGRYCG 2 cut(s) 251, 419
BshFI GGCC 1 cut(s) 589
BsiEI CGRYCG 2 cut(s) 251, 419
BslI CCNNNNNNNGG 2 cut(s) 541, 585
BsmAI GTCTC 2 cut(s) 23, 685
BsmI GAATGC 1 cut(s) 155
BsnI GGCC 1 cut(s) 589
Bsp143I GATC 4 cut(s) 76, 139, 516, 565
BspACI CCGC 2 cut(s) 116, 419
BspANI GGCC 1 cut(s) 589
BspCNI CTCAG 2 cut(s) 156, 695
BspFNI CGCG 2 cut(s) 118, 120
BspLI GGNNCC 1 cut(s) 78
BspPI GGATC 3 cut(s) 71, 84, 524
BspQI GCTCTTC 1 cut(s) 636
BspTI CTTAAG 1 cut(s) 422
BssECI CCNNGG 2 cut(s) 455, 590
BssMI GATC 4 cut(s) 76, 139, 516, 565
Bst2UI CCWGG 3 cut(s) 63, 342, 456
Bst4CI ACNGT 1 cut(s) 249
Bst6I CTCTTC 1 cut(s) 636
BstAFI CTTAAG 1 cut(s) 422
BstDEI CTNAG 3 cut(s) 143, 443, 682
BstFNI CGCG 2 cut(s) 118, 120
BstHHI GCGC 1 cut(s) 120
BstKTI GATC 4 cut(s) 79, 142, 519, 568
BstMAI GTCTC 2 cut(s) 23, 685
BstMBI GATC 4 cut(s) 76, 139, 516, 565
BstMCI CGRYCG 2 cut(s) 251, 419
BstMWI GCNNNNNNNGC 2 cut(s) 506, 626
BstNI CCWGG 3 cut(s) 63, 342, 456
BstSCI CCNGG 3 cut(s) 61, 340, 454
BstUI CGCG 2 cut(s) 118, 120
BstV1I GCAGC 2 cut(s) 544, 638
BstX2I RGATCY 2 cut(s) 76, 516
BstXI CCANNNNNNTGG 1 cut(s) 513
BstYI RGATCY 2 cut(s) 76, 516
BsuRI GGCC 1 cut(s) 589
BtsI GCAGTG 1 cut(s) 690
BtsIMutI CAGTG 2 cut(s) 151, 690
CfoI GCGC 1 cut(s) 120
CseI GACGC 1 cut(s) 485
Csp6I GTAC 1 cut(s) 686
CviAII CATG 3 cut(s) 5, 309, 496
CviJI RGCY 8 cut(s) 86, 345, 442, 534, 557, 589, 629, 652
CviKI_1 RGCY 8 cut(s) 86, 345, 442, 534, 557, 589, 629, 652
CviQI GTAC 1 cut(s) 686
DdeI CTNAG 3 cut(s) 143, 443, 682
DpnI GATC 4 cut(s) 78, 141, 518, 567
DpnII GATC 4 cut(s) 76, 139, 516, 565
DriI GACNNNNNGTC 1 cut(s) 677
Eam1104I CTCTTC 1 cut(s) 636
Eam1105I GACNNNNNGTC 1 cut(s) 677
EarI CTCTTC 1 cut(s) 636
Eco147I AGGCCT 1 cut(s) 589
Eco57I CTGAAG 2 cut(s) 102, 180
EcoRII CCWGG 3 cut(s) 61, 340, 454
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 3 cut(s) 8, 312, 499
FaiI YATR 7 cut(s) 6, 310, 429, 497, 611, 644, 646
FatI CATG 3 cut(s) 4, 308, 495
FauNDI CATATG 1 cut(s) 644
FbaI TGATCA 1 cut(s) 565
Fnu4HI GCNGC 2 cut(s) 558, 627
Fsp4HI GCNGC 2 cut(s) 558, 627
FspBI CTAG 1 cut(s) 524
GlaI GCGC 1 cut(s) 119
GluI GCNGC 2 cut(s) 558, 627
HaeIII GGCC 1 cut(s) 589
HgaI GACGC 1 cut(s) 485
HhaI GCGC 1 cut(s) 120
Hin1II CATG 3 cut(s) 8, 312, 499
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HincII GTYRAC 4 cut(s) 102, 224, 255, 493
HindII GTYRAC 4 cut(s) 102, 224, 255, 493
HinfI GANTC 1 cut(s) 13
HpaI GTTAAC 1 cut(s) 493
Hpy166II GTNNAC 6 cut(s) 102, 210, 224, 255, 475, 493
Hpy188I TCNGA 1 cut(s) 43
Hpy188III TCNNGA 2 cut(s) 17, 80
Hpy8I GTNNAC 6 cut(s) 102, 210, 224, 255, 475, 493
Hpy99I CGWCG 1 cut(s) 159
HpyCH4III ACNGT 1 cut(s) 249
HpyCH4V TGCA 4 cut(s) 4, 626, 642, 695
HpyF10VI GCNNNNNNNGC 2 cut(s) 506, 626
HpyF3I CTNAG 3 cut(s) 143, 443, 682
Hsp92II CATG 3 cut(s) 8, 312, 499
HspAI GCGC 1 cut(s) 118
Ksp22I TGATCA 1 cut(s) 565
KspAI GTTAAC 1 cut(s) 493
Kzo9I GATC 4 cut(s) 76, 139, 516, 565
LguI GCTCTTC 1 cut(s) 636
LmnI GCTCC 1 cut(s) 649
LpnPI CCDG 9 cut(s) 48, 75, 93, 327, 354, 441, 468, 519, 554
Lsp1109I GCAGC 2 cut(s) 544, 638
MaeI CTAG 1 cut(s) 524
MaeIII GTNAC 3 cut(s) 88, 243, 294
MalI GATC 4 cut(s) 78, 141, 518, 567
MboI GATC 4 cut(s) 76, 139, 516, 565
MboII GAAGA 4 cut(s) 78, 443, 567, 623
MflI RGATCY 2 cut(s) 76, 516
MluCI AATT 9 cut(s) 37, 124, 185, 234, 265, 329, 335, 480, 697
MmeI TCCRAC 1 cut(s) 329
MnlI CCTC 3 cut(s) 67, 188, 600
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 6 cut(s) 228, 264, 381, 423, 492, 700
MspA1I CMGCKG 1 cut(s) 557
MspCI CTTAAG 1 cut(s) 422
MspR9I CCNGG 3 cut(s) 63, 342, 456
Mva1269I GAATGC 1 cut(s) 155
MvaI CCWGG 3 cut(s) 63, 342, 456
MvnI CGCG 2 cut(s) 118, 120
MwoI GCNNNNNNNGC 2 cut(s) 506, 626
NdeI CATATG 1 cut(s) 644
NdeII GATC 4 cut(s) 76, 139, 516, 565
NlaIII CATG 3 cut(s) 8, 312, 499
NlaIV GGNNCC 1 cut(s) 78
NsiI ATGCAT 1 cut(s) 6
PceI AGGCCT 1 cut(s) 589
PciSI GCTCTTC 1 cut(s) 636
PctI GAATGC 1 cut(s) 155
PfeI GAWTC 1 cut(s) 13
PkrI GCNGC 2 cut(s) 559, 628
Psp6I CCWGG 3 cut(s) 61, 340, 454
PspGI CCWGG 3 cut(s) 61, 340, 454
PspN4I GGNNCC 1 cut(s) 78
PsrI GAACNNNNNNTAC 2 cut(s) 587, 619
PsuI RGATCY 2 cut(s) 76, 516
PvuII CAGCTG 1 cut(s) 557
RsaI GTAC 1 cut(s) 687
RsaNI GTAC 1 cut(s) 686
SapI GCTCTTC 1 cut(s) 636
SaqAI TTAA 6 cut(s) 228, 264, 381, 423, 492, 700
SatI GCNGC 2 cut(s) 558, 627
Sau3AI GATC 4 cut(s) 76, 139, 516, 565
ScaI AGTACT 1 cut(s) 687
ScrFI CCNGG 3 cut(s) 63, 342, 456
SetI ASST 9 cut(s) 64, 264, 444, 449, 559, 573, 631, 654, 667
SmlI CTYRAG 1 cut(s) 422
SmoI CTYRAG 1 cut(s) 422
Sse9I AATT 9 cut(s) 37, 124, 185, 234, 265, 329, 335, 480, 697
SseBI AGGCCT 1 cut(s) 589
SsiI CCGC 2 cut(s) 116, 419
SspMI CTAG 1 cut(s) 524
StuI AGGCCT 1 cut(s) 589
StyD4I CCNGG 3 cut(s) 61, 340, 454
TaaI ACNGT 1 cut(s) 249
TaqI TCGA 1 cut(s) 16
TaqII GACCGA 2 cut(s) 147, 209
TasI AATT 9 cut(s) 37, 124, 185, 234, 265, 329, 335, 480, 697
TatI WGTACW 1 cut(s) 685
TfiI GAWTC 1 cut(s) 13
Tru1I TTAA 6 cut(s) 228, 264, 381, 423, 492, 700
Tru9I TTAA 6 cut(s) 228, 264, 381, 423, 492, 700
TscAI CASTG 2 cut(s) 151, 697
TseI GCWGC 2 cut(s) 557, 626
TspDTI ATGAA 4 cut(s) 123, 297, 380, 474
TspRI CASTG 2 cut(s) 151, 697
Vha464I CTTAAG 1 cut(s) 422
XapI RAATTY 2 cut(s) 124, 234
XspI CTAG 1 cut(s) 524
ZrmI AGTACT 1 cut(s) 687
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.