Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

11491012 .. 11491510

Gene Structure 499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGCAGCTTTTCGGCATCGATTGCATCCCCTCTCGTGGCTCCTCCGTGGGTTCAAGAGCTCCATTTCCCTCACCTCCACATCCCCCCATCACCATCGATCATATGGTTCCCGTCATGCCCTCGGGGCCTACTCCCGCATGTTTTCTGGGCAAGACCAAGGAGCTCTCATGGTGCAGGTGCATTGCGAAAAGGTCCTTGGCCGATCTCAGAGACCTCAAAGTGCCAAACCCGGCATGGACGCCGCTGATATTTAGGTTTCCCCACGAAGAGCCATACAAAGTGCTTGACATGCCATTGCTGATAGCTCAGGTGACTCTTTTCCGCTGCGGTGGGTTTAGCCTTGGCTTGAGAATCTGCCACTGTATTGTCGACGGGATTGGTGCTATACAATTTCTCAGCTCCAGGGCTGCCACCGCAAAAGCCGGCGCATTGATCTCAAACCCGGCGCCGTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009664 GO:0009698 GO:0009699 GO:0009832 GO:0009987 GO:0010345 GO:0010383 GO:0010393 GO:0016043 GO:0016051 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0019438 GO:0019748 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044550 GO:0045229 GO:0045488 GO:0045489 GO:0050734 GO:0052325 GO:0052546 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

Transferase

Protein Analysis

152

Amino Acids

16.29

Weight (kDa)

9.06

Isoelectric Point (pI)

50.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	63 - 146	1.4e-11	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	165
Acc36I	ACCTGC	1 cut(s)	165
AccB1I	GGYRCC	1 cut(s)	445
AccI	GTMKAC	1 cut(s)	369
AciI	CCGC	5 cut(s)	135, 242, 322, 327, 414
AcoI	YGGCCR	1 cut(s)	198
AcyI	GRCGYC	2 cut(s)	239, 446
AfiI	CCNNNNNNNGG	1 cut(s)	35
AgsI	TTSAA	1 cut(s)	54
AjnI	CCWGG	1 cut(s)	401
AjuI	GAANNNNNNNTTGG	2 cut(s)	179, 211
AluBI	AGCT	5 cut(s)	7, 59, 163, 305, 399
AluI	AGCT	5 cut(s)	7, 59, 163, 305, 399
Alw21I	GWGCWC	2 cut(s)	61, 165
Alw26I	GTCTC	1 cut(s)	204
Ama87I	CYCGRG	1 cut(s)	121
AoxI	GGCC	2 cut(s)	125, 198
ApeKI	GCWGC	3 cut(s)	4, 324, 407
AspLEI	GCGC	2 cut(s)	428, 448
AspS9I	GGNCC	2 cut(s)	125, 192
AsuC2I	CCSGG	2 cut(s)	230, 443
AsuHPI	GGTGA	3 cut(s)	63, 82, 322
AvaI	CYCGRG	1 cut(s)	121
AvaII	GGWCC	1 cut(s)	192
BanI	GGYRCC	1 cut(s)	445
BanII	GRGCYC	2 cut(s)	61, 165
BauI	CACGAG	1 cut(s)	33
Bbv12I	GWGCWC	2 cut(s)	61, 165
BbvI	GCAGC	3 cut(s)	16, 311, 394
BccI	CCATC	2 cut(s)	95, 101
BceAI	ACGGC	1 cut(s)	433
BciT130I	CCWGG	1 cut(s)	403
BcnI	CCSGG	2 cut(s)	230, 443
BcoDI	GTCTC	1 cut(s)	204
BfoI	RGCGCY	1 cut(s)	449
BfuAI	ACCTGC	1 cut(s)	165
BglI	GCCNNNNNGGC	1 cut(s)	124
BisI	GCNGC	4 cut(s)	5, 242, 325, 408
BlsI	GCNGC	4 cut(s)	6, 243, 326, 409
Bme1390I	CCNGG	3 cut(s)	230, 403, 443
Bme18I	GGWCC	1 cut(s)	192
BmeT110I	CYCGRG	1 cut(s)	121
BmgT120I	GGNCC	2 cut(s)	125, 192
BmiI	GGNNCC	4 cut(s)	40, 108, 126, 447
BmrFI	CCNGG	3 cut(s)	230, 403, 443
BmsI	GCATC	2 cut(s)	24, 33
BpmI	CTGGAG	1 cut(s)	385
Bpu10I	CCTNAGC	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	367
BpuMI	CCSGG	2 cut(s)	230, 443
Bsa29I	ATCGAT	2 cut(s)	18, 96
BsaHI	GRCGYC	2 cut(s)	239, 446
BsaI	GGTCTC	1 cut(s)	204
BsaJI	CCNNGG	6 cut(s)	45, 120, 156, 195, 340, 402
Bsc4I	CCNNNNNNNGG	1 cut(s)	35
Bse118I	RCCGGY	1 cut(s)	422
Bse3DI	GCAATG	2 cut(s)	180, 293
BseBI	CCWGG	1 cut(s)	403
BseCI	ATCGAT	2 cut(s)	18, 96
BseDI	CCNNGG	6 cut(s)	45, 120, 156, 195, 340, 402
BseGI	GGATG	2 cut(s)	24, 79
BseLI	CCNNNNNNNGG	1 cut(s)	35
BseMI	GCAATG	2 cut(s)	180, 293
BseMII	CTCAG	3 cut(s)	220, 320, 409
BseRI	GAGGAG	1 cut(s)	31
BseXI	GCAGC	3 cut(s)	16, 311, 394
BsgI	GTGCAG	1 cut(s)	193
BshFI	GGCC	2 cut(s)	127, 200
BshNI	GGYRCC	1 cut(s)	445
BshVI	ATCGAT	2 cut(s)	18, 96
BsiHKAI	GWGCWC	2 cut(s)	61, 165
BsiHKCI	CYCGRG	1 cut(s)	121
BsiSI	CCGG	3 cut(s)	230, 423, 443
BslI	CCNNNNNNNGG	1 cut(s)	35
BsmAI	GTCTC	1 cut(s)	204
BsnI	GGCC	2 cut(s)	127, 200
Bso31I	GGTCTC	1 cut(s)	204
BsoBI	CYCGRG	1 cut(s)	121
Bsp1286I	GDGCHC	2 cut(s)	61, 165
Bsp143I	GATC	3 cut(s)	97, 202, 432
BspACI	CCGC	5 cut(s)	135, 242, 322, 327, 414
BspANI	GGCC	2 cut(s)	127, 200
BspCNI	CTCAG	3 cut(s)	219, 319, 408
BspDI	ATCGAT	2 cut(s)	18, 96
BspLI	GGNNCC	4 cut(s)	40, 108, 126, 447
BspMI	ACCTGC	1 cut(s)	165
BspQI	GCTCTTC	1 cut(s)	261
BspT107I	GGYRCC	1 cut(s)	445
BspTNI	GGTCTC	1 cut(s)	204
BsrDI	GCAATG	2 cut(s)	180, 293
BsrFI	RCCGGY	1 cut(s)	422
BssAI	RCCGGY	1 cut(s)	422
BssECI	CCNNGG	6 cut(s)	45, 120, 156, 195, 340, 402
BssMI	GATC	3 cut(s)	97, 202, 432
BssNI	GRCGYC	2 cut(s)	239, 446
BssSI	CACGAG	1 cut(s)	33
BssT1I	CCWWGG	3 cut(s)	156, 195, 340
Bst2BI	CACGAG	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	403
Bst4CI	ACNGT	1 cut(s)	362
Bst6I	CTCTTC	1 cut(s)	261
BstACI	GRCGYC	2 cut(s)	239, 446
BstAPI	GCANNNNNTGC	1 cut(s)	21
BstC8I	GCNNGC	1 cut(s)	424
BstDEI	CTNAG	3 cut(s)	206, 306, 395
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	2 cut(s)	24, 79
BstH2I	RGCGCY	1 cut(s)	449
BstHHI	GCGC	2 cut(s)	428, 448
BstKTI	GATC	3 cut(s)	100, 205, 435
BstMAI	GTCTC	1 cut(s)	204
BstMBI	GATC	3 cut(s)	97, 202, 432
BstMWI	GCNNNNNNNGC	4 cut(s)	21, 124, 289, 413
BstNI	CCWGG	1 cut(s)	403
BstNSI	RCATGY	2 cut(s)	141, 292
BstSCI	CCNGG	3 cut(s)	228, 401, 441
BstV1I	GCAGC	3 cut(s)	16, 311, 394
Bsu15I	ATCGAT	2 cut(s)	18, 96
BsuRI	GGCC	2 cut(s)	127, 200
BsuTUI	ATCGAT	2 cut(s)	18, 96
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	2 cut(s)	24, 79
BtsIMutI	CAGTG	1 cut(s)	358
BveI	ACCTGC	1 cut(s)	165
Cac8I	GCNNGC	1 cut(s)	424
CfoI	GCGC	2 cut(s)	428, 448
Cfr10I	RCCGGY	1 cut(s)	422
Cfr13I	GGNCC	2 cut(s)	125, 192
ClaI	ATCGAT	2 cut(s)	18, 96
CseI	GACGC	1 cut(s)	247
CviAII	CATG	5 cut(s)	115, 138, 168, 234, 289
DdeI	CTNAG	3 cut(s)	206, 306, 395
DinI	GGCGCC	1 cut(s)	447
DpnI	GATC	3 cut(s)	99, 204, 434
DpnII	GATC	3 cut(s)	97, 202, 432
EaeI	YGGCCR	1 cut(s)	198
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
Ecl136II	GAGCTC	2 cut(s)	59, 163
Eco130I	CCWWGG	3 cut(s)	156, 195, 340
Eco24I	GRGCYC	2 cut(s)	61, 165
Eco31I	GGTCTC	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	192
Eco53kI	GAGCTC	2 cut(s)	59, 163
Eco88I	CYCGRG	1 cut(s)	121
EcoICRI	GAGCTC	2 cut(s)	59, 163
EcoO109I	RGGNCCY	2 cut(s)	125, 192
EcoRII	CCWGG	1 cut(s)	401
EcoT14I	CCWWGG	3 cut(s)	156, 195, 340
EcoT38I	GRGCYC	2 cut(s)	61, 165
EgeI	GGCGCC	1 cut(s)	447
EheI	GGCGCC	1 cut(s)	447
ErhI	CCWWGG	3 cut(s)	156, 195, 340
FaeI	CATG	5 cut(s)	118, 141, 171, 237, 292
FaiI	YATR	9 cut(s)	102, 104, 116, 139, 169, 235, 274, 290, 386
FatI	CATG	5 cut(s)	114, 137, 167, 233, 288
FauI	CCCGC	1 cut(s)	142
FauNDI	CATATG	1 cut(s)	102
FblI	GTMKAC	1 cut(s)	369
Fnu4HI	GCNGC	4 cut(s)	5, 242, 325, 408
FokI	GGATG	2 cut(s)	11, 66
FriOI	GRGCYC	2 cut(s)	61, 165
Fsp4HI	GCNGC	4 cut(s)	5, 242, 325, 408
GlaI	GCGC	2 cut(s)	427, 447
GluI	GCNGC	4 cut(s)	5, 242, 325, 408
GsuI	CTGGAG	1 cut(s)	385
HaeII	RGCGCY	1 cut(s)	449
HaeIII	GGCC	2 cut(s)	127, 200
HapII	CCGG	3 cut(s)	230, 423, 443
HgaI	GACGC	1 cut(s)	247
HhaI	GCGC	2 cut(s)	428, 448
Hin1I	GRCGYC	2 cut(s)	239, 446
Hin1II	CATG	5 cut(s)	118, 141, 171, 237, 292
Hin6I	GCGC	2 cut(s)	426, 446
HinP1I	GCGC	2 cut(s)	426, 446
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HinfI	GANTC	2 cut(s)	313, 351
HpaII	CCGG	3 cut(s)	230, 423, 443
HphI	GGTGA	3 cut(s)	63, 82, 322
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188I	TCNGA	1 cut(s)	209
Hpy188III	TCNNGA	1 cut(s)	54
Hpy8I	GTNNAC	1 cut(s)	370
Hpy99I	CGWCG	1 cut(s)	374
HpyCH4III	ACNGT	1 cut(s)	362
HpyCH4V	TGCA	4 cut(s)	4, 24, 174, 180
HpyF10VI	GCNNNNNNNGC	4 cut(s)	21, 124, 289, 413
HpyF3I	CTNAG	3 cut(s)	206, 306, 395
Hsp92I	GRCGYC	2 cut(s)	239, 446
Hsp92II	CATG	5 cut(s)	118, 141, 171, 237, 292
HspAI	GCGC	2 cut(s)	426, 446
KasI	GGCGCC	1 cut(s)	445
KroI	GCCGGC	1 cut(s)	422
KroNI	GCCGGC	1 cut(s)	424
Kzo9I	GATC	3 cut(s)	97, 202, 432
LguI	GCTCTTC	1 cut(s)	261
LmnI	GCTCC	4 cut(s)	44, 64, 160, 404
LpnPI	CCDG	7 cut(s)	131, 160, 243, 293, 388, 415, 436
Lsp1109I	GCAGC	3 cut(s)	16, 311, 394
LweI	GCATC	2 cut(s)	24, 33
MaeIII	GTNAC	1 cut(s)	310
MalI	GATC	3 cut(s)	99, 204, 434
MboI	GATC	3 cut(s)	97, 202, 432
MboII	GAAGA	1 cut(s)	278
MhlI	GDGCHC	2 cut(s)	61, 165
MluCI	AATT	1 cut(s)	389
Mly113I	GGCGCC	1 cut(s)	446
MlyI	GAGTC	1 cut(s)	307
MnlI	CCTC	6 cut(s)	40, 52, 79, 84, 130, 224
MroNI	GCCGGC	1 cut(s)	422
MspA1I	CMGCKG	2 cut(s)	244, 324
MspI	CCGG	3 cut(s)	230, 423, 443
MspR9I	CCNGG	3 cut(s)	230, 403, 443
MvaI	CCWGG	1 cut(s)	403
MwoI	GCNNNNNNNGC	4 cut(s)	21, 124, 289, 413
NaeI	GCCGGC	1 cut(s)	424
NarI	GGCGCC	1 cut(s)	446
NciI	CCSGG	2 cut(s)	230, 443
NdeI	CATATG	1 cut(s)	102
NdeII	GATC	3 cut(s)	97, 202, 432
NgoMIV	GCCGGC	1 cut(s)	422
NlaIII	CATG	5 cut(s)	118, 141, 171, 237, 292
NlaIV	GGNNCC	4 cut(s)	40, 108, 126, 447
NmuCI	GTSAC	1 cut(s)	310
NspI	RCATGY	2 cut(s)	141, 292
PaqCI	CACCTGC	1 cut(s)	165
PciSI	GCTCTTC	1 cut(s)	261
PdiI	GCCGGC	1 cut(s)	424
PfeI	GAWTC	1 cut(s)	351
PkrI	GCNGC	4 cut(s)	6, 243, 326, 409
PleI	GAGTC	1 cut(s)	307
PluTI	GGCGCC	1 cut(s)	449
PpsI	GAGTC	1 cut(s)	307
PpuMI	RGGWCCY	1 cut(s)	192
Psp124BI	GAGCTC	2 cut(s)	61, 165
Psp5II	RGGWCCY	1 cut(s)	192
Psp6I	CCWGG	1 cut(s)	401
PspGI	CCWGG	1 cut(s)	401
PspN4I	GGNNCC	4 cut(s)	40, 108, 126, 447
PspPI	GGNCC	2 cut(s)	125, 192
PspPPI	RGGWCCY	1 cut(s)	192
SacI	GAGCTC	2 cut(s)	61, 165
SalI	GTCGAC	1 cut(s)	368
SapI	GCTCTTC	1 cut(s)	261
SatI	GCNGC	4 cut(s)	5, 242, 325, 408
Sau3AI	GATC	3 cut(s)	97, 202, 432
Sau96I	GGNCC	2 cut(s)	125, 192
SchI	GAGTC	1 cut(s)	307
ScrFI	CCNGG	3 cut(s)	230, 403, 443
SduI	GDGCHC	2 cut(s)	61, 165
SfaNI	GCATC	2 cut(s)	24, 33
SfoI	GGCGCC	1 cut(s)	447
SinI	GGWCC	1 cut(s)	192
SmlI	CTYRAG	1 cut(s)	346
SmoI	CTYRAG	1 cut(s)	346
Sse9I	AATT	1 cut(s)	389
SsiI	CCGC	5 cut(s)	135, 242, 322, 327, 414
SspDI	GGCGCC	1 cut(s)	445
SstI	GAGCTC	2 cut(s)	61, 165
StyD4I	CCNGG	3 cut(s)	228, 401, 441
StyI	CCWWGG	3 cut(s)	156, 195, 340
TaaI	ACNGT	1 cut(s)	362
TaqI	TCGA	3 cut(s)	18, 96, 369
TasI	AATT	1 cut(s)	389
TauI	GCSGC	1 cut(s)	244
TfiI	GAWTC	1 cut(s)	351
TscAI	CASTG	1 cut(s)	365
TseFI	GTSAC	1 cut(s)	310
TseI	GCWGC	3 cut(s)	4, 324, 407
Tsp45I	GTSAC	1 cut(s)	310
TspGWI	ACGGA	1 cut(s)	34
TspRI	CASTG	1 cut(s)	365
VpaK11BI	GGWCC	1 cut(s)	192
XceI	RCATGY	2 cut(s)	141, 292
XcmI	CCANNNNNNNNNTGG	2 cut(s)	100, 231
XmiI	GTMKAC	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.