pycom15g16480

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Reverse (-)
11555768 .. 11556146
379 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 336 bp
ATGGGCGCACGTGATCCGAGCACTAATCAAATCATGAGTAGTACAGAAGAACAACTAGCAGTAGCAGTGCATGATCATCGATCCTCTTGGCCTTGCCTTCATATTCAGCCTCGTTTGCGACAGCCTCACTCTCACTCTCAGCCTCAAACTCGTCCTGAGAATCTCCCAGTATTGTTCCAGCCACAGGGTCCAGCGCCCCGTGAAAGTGGAGAGCAGACATCCGACCCAGTGGACGATGATCCTCTTGCGCACCTTTGCATATCTTTTGCACGTCTTTCTTTGTCTCCTGAACATTCATCATCTACTTTCGCAGCCCACATTCAGCCGGACGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

112

Amino Acids

12.24

Weight (kDa)

5.64

Isoelectric Point (pI)

72.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 249
AclWI GGATC 3 cut(s) 8, 75, 233
AcvI CACGTG 1 cut(s) 11
AcyI GRCGYC 1 cut(s) 330
AfaI GTAC 1 cut(s) 43
AfiI CCNNNNNNNGG 1 cut(s) 184
AjiI CACGTC 1 cut(s) 272
Alw21I GWGCWC 1 cut(s) 23
Alw26I GTCTC 1 cut(s) 288
AlwI GGATC 3 cut(s) 8, 75, 233
AoxI GGCC 1 cut(s) 89
ApeKI GCWGC 1 cut(s) 311
AspLEI GCGC 3 cut(s) 8, 196, 250
AspS9I GGNCC 1 cut(s) 188
AvaII GGWCC 1 cut(s) 188
BbrPI CACGTG 1 cut(s) 11
Bbv12I GWGCWC 1 cut(s) 23
BbvI GCAGC 1 cut(s) 323
BcgI CGANNNNNNTGC 2 cut(s) 59, 93
BclI TGATCA 1 cut(s) 73
BcoDI GTCTC 1 cut(s) 288
BfaI CTAG 1 cut(s) 56
BfoI RGCGCY 1 cut(s) 197
BisI GCNGC 1 cut(s) 312
BlsI GCNGC 1 cut(s) 313
Bme18I GGWCC 1 cut(s) 188
BmgBI CACGTC 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 188
BmiI GGNNCC 1 cut(s) 189
BmrI ACTGGG 2 cut(s) 161, 221
BmuI ACTGGG 2 cut(s) 161, 221
Bsa29I ATCGAT 1 cut(s) 79
BsaAI YACGTR 1 cut(s) 11
BsaHI GRCGYC 1 cut(s) 330
Bsc4I CCNNNNNNNGG 1 cut(s) 184
Bse1I ACTGG 2 cut(s) 167, 227
BseCI ATCGAT 1 cut(s) 79
BseGI GGATG 1 cut(s) 218
BseLI CCNNNNNNNGG 1 cut(s) 184
BseMII CTCAG 2 cut(s) 147, 152
BseNI ACTGG 2 cut(s) 167, 227
BseXI GCAGC 1 cut(s) 323
BshFI GGCC 1 cut(s) 91
BshVI ATCGAT 1 cut(s) 79
BsiHKAI GWGCWC 1 cut(s) 23
BsiSI CCGG 1 cut(s) 326
BslI CCNNNNNNNGG 1 cut(s) 184
BsmAI GTCTC 1 cut(s) 288
BsnI GGCC 1 cut(s) 91
Bsp1286I GDGCHC 1 cut(s) 23
Bsp143I GATC 4 cut(s) 13, 73, 80, 238
BspANI GGCC 1 cut(s) 91
BspCNI CTCAG 2 cut(s) 148, 151
BspDI ATCGAT 1 cut(s) 79
BspHI TCATGA 1 cut(s) 33
BspLI GGNNCC 1 cut(s) 189
BspPI GGATC 3 cut(s) 8, 75, 233
BsrI ACTGG 2 cut(s) 167, 227
BssMI GATC 4 cut(s) 13, 73, 80, 238
BssNI GRCGYC 1 cut(s) 330
BstACI GRCGYC 1 cut(s) 330
BstBAI YACGTR 1 cut(s) 11
BstDEI CTNAG 2 cut(s) 138, 156
BstF5I GGATG 1 cut(s) 218
BstH2I RGCGCY 1 cut(s) 197
BstHHI GCGC 3 cut(s) 8, 196, 250
BstKTI GATC 4 cut(s) 16, 76, 83, 241
BstMAI GTCTC 1 cut(s) 288
BstMBI GATC 4 cut(s) 13, 73, 80, 238
BstMWI GCNNNNNNNGC 1 cut(s) 115
BstV1I GCAGC 1 cut(s) 323
Bsu15I ATCGAT 1 cut(s) 79
BsuRI GGCC 1 cut(s) 91
BsuTUI ATCGAT 1 cut(s) 79
BtrI CACGTC 1 cut(s) 272
BtsCI GGATG 1 cut(s) 218
BtsI GCAGTG 1 cut(s) 72
BtsIMutI CAGTG 2 cut(s) 72, 234
CciI TCATGA 1 cut(s) 33
CfoI GCGC 3 cut(s) 8, 196, 250
Cfr13I GGNCC 1 cut(s) 188
ClaI ATCGAT 1 cut(s) 79
Csp6I GTAC 1 cut(s) 42
CviAII CATG 2 cut(s) 34, 71
CviJI RGCY 7 cut(s) 91, 109, 124, 142, 181, 314, 325
CviKI_1 RGCY 7 cut(s) 91, 109, 124, 142, 181, 314, 325
CviQI GTAC 1 cut(s) 42
DdeI CTNAG 2 cut(s) 138, 156
DpnI GATC 4 cut(s) 15, 75, 82, 240
DpnII GATC 4 cut(s) 13, 73, 80, 238
Eco47I GGWCC 1 cut(s) 188
Eco72I CACGTG 1 cut(s) 11
FaeI CATG 2 cut(s) 37, 74
FaiI YATR 4 cut(s) 35, 72, 102, 260
FatI CATG 2 cut(s) 33, 70
FbaI TGATCA 1 cut(s) 73
Fnu4HI GCNGC 1 cut(s) 312
FokI GGATG 1 cut(s) 205
Fsp4HI GCNGC 1 cut(s) 312
FspBI CTAG 1 cut(s) 56
FspI TGCGCA 1 cut(s) 249
GlaI GCGC 3 cut(s) 7, 195, 249
GluI GCNGC 1 cut(s) 312
HaeII RGCGCY 1 cut(s) 197
HaeIII GGCC 1 cut(s) 91
HapII CCGG 1 cut(s) 326
HhaI GCGC 3 cut(s) 8, 196, 250
Hin1I GRCGYC 1 cut(s) 330
Hin1II CATG 2 cut(s) 37, 74
Hin6I GCGC 3 cut(s) 6, 194, 248
HinP1I GCGC 3 cut(s) 6, 194, 248
HinfI GANTC 1 cut(s) 160
HpaII CCGG 1 cut(s) 326
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 2 cut(s) 18, 223
Hpy188III TCNNGA 3 cut(s) 34, 155, 287
Hpy8I GTNNAC 1 cut(s) 232
HpyAV CCTTC 1 cut(s) 107
HpyCH4IV ACGT 2 cut(s) 10, 271
HpyCH4V TGCA 3 cut(s) 70, 258, 269
HpyF10VI GCNNNNNNNGC 1 cut(s) 115
HpyF3I CTNAG 2 cut(s) 138, 156
HpySE526I ACGT 2 cut(s) 10, 271
Hsp92I GRCGYC 1 cut(s) 330
Hsp92II CATG 2 cut(s) 37, 74
HspAI GCGC 3 cut(s) 6, 194, 248
Ksp22I TGATCA 1 cut(s) 73
Kzo9I GATC 4 cut(s) 13, 73, 80, 238
LpnPI CCDG 7 cut(s) 168, 170, 180, 191, 204, 240, 300
Lsp1109I GCAGC 1 cut(s) 323
MaeI CTAG 1 cut(s) 56
MaeII ACGT 2 cut(s) 10, 271
MalI GATC 4 cut(s) 15, 75, 82, 240
MboI GATC 4 cut(s) 13, 73, 80, 238
MboII GAAGA 1 cut(s) 59
MhlI GDGCHC 1 cut(s) 23
MmeI TCCRAC 1 cut(s) 246
MnlI CCTC 5 cut(s) 94, 120, 135, 153, 252
MspI CCGG 1 cut(s) 326
MwoI GCNNNNNNNGC 1 cut(s) 115
NdeII GATC 4 cut(s) 13, 73, 80, 238
NlaIII CATG 2 cut(s) 37, 74
NlaIV GGNNCC 1 cut(s) 189
NsbI TGCGCA 1 cut(s) 249
PagI TCATGA 1 cut(s) 33
PfeI GAWTC 1 cut(s) 160
PkrI GCNGC 1 cut(s) 313
PmaCI CACGTG 1 cut(s) 11
PmlI CACGTG 1 cut(s) 11
Ppu21I YACGTR 1 cut(s) 11
PspCI CACGTG 1 cut(s) 11
PspN4I GGNNCC 1 cut(s) 189
PspPI GGNCC 1 cut(s) 188
RsaI GTAC 1 cut(s) 43
RsaNI GTAC 1 cut(s) 42
SatI GCNGC 1 cut(s) 312
Sau3AI GATC 4 cut(s) 13, 73, 80, 238
Sau96I GGNCC 1 cut(s) 188
SduI GDGCHC 1 cut(s) 23
SetI ASST 3 cut(s) 13, 255, 274
SinI GGWCC 1 cut(s) 188
SspMI CTAG 1 cut(s) 56
TaiI ACGT 2 cut(s) 13, 274
TaqI TCGA 1 cut(s) 79
TatI WGTACW 1 cut(s) 41
TfiI GAWTC 1 cut(s) 160
TscAI CASTG 2 cut(s) 72, 234
TseI GCWGC 1 cut(s) 311
TspDTI ATGAA 2 cut(s) 89, 285
TspRI CASTG 2 cut(s) 72, 234
VpaK11BI GGWCC 1 cut(s) 188
XspI CTAG 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.