pycom15g16600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Forward (+)
11627180 .. 11627957
778 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 588 bp
ATGCCACTTGTTGGCCTTCTCATTATCGGAGGTGTCTGTGCAGACACGGGCAGTCAGGAGTCGGAATTTCCAGAACTAGAAGCCTTGTCTAGGCTTGATTTTGGTGCTGCGATGAAGGTCTTCTTGGCCAAGAGACTAACATCTGAATTCACGCAGGCTACAGCCGATGTAGAAGAGAGCTCTGTGATTATTGGTGAGAGAAACAGAGCTGCCATAGATGCTCTCCAAAAAGCAATCGACAGCGGGAACAACAAGATTGCAATACTATACGGAGGGGGTCACATGCCAGACCTGGGGAGACGATTGCAAGAGTTGGAGCTCATCCCTACTGAGGCACAATGGATATCCGCGTGGTCCATAAGGAAGCAGGATCTGGAGAGCAGTTCCCTTCCATTTCTGAAGAAGATGGCGGAACTATCAGGTTGGCCTTTGAACCGCTACCAGACTTTGGCATTGCTCATATTTTCCACGGTACTCGCACTGGATCTATGGTTTTGGGAGCTCTTTTTTGGCACCGCTGTGAACTGGACGTGCCAACTTGCTTCACAAGTTACTGAATATATTGACGGTGCAGGGATGAACTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

196

Amino Acids

21.52

Weight (kDa)

4.62

Isoelectric Point (pI)

44.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 512
AccB7I CCANNNNNTGG 2 cut(s) 11, 448
AccII CGCG 1 cut(s) 350
AciI CCGC 5 cut(s) 243, 348, 410, 436, 516
AclWI GGATC 2 cut(s) 378, 492
AcoI YGGCCR 1 cut(s) 126
AcsI RAATTY 2 cut(s) 65, 146
AcuI CTGAAG 1 cut(s) 419
AfaI GTAC 1 cut(s) 474
AfiI CCNNNNNNNGG 5 cut(s) 11, 90, 293, 331, 448
AgsI TTSAA 1 cut(s) 433
AjiI CACGTC 1 cut(s) 531
AjnI CCWGG 1 cut(s) 291
AjuI GAANNNNNNNTTGG 2 cut(s) 107, 139
AleI CACNNNNGTG 1 cut(s) 518
AluBI AGCT 4 cut(s) 180, 209, 319, 502
AluI AGCT 4 cut(s) 180, 209, 319, 502
Alw21I GWGCWC 3 cut(s) 182, 321, 504
Alw26I GTCTC 2 cut(s) 127, 292
AlwI GGATC 2 cut(s) 378, 492
AlwNI CAGNNNCTG 1 cut(s) 373
AoxI GGCC 3 cut(s) 13, 126, 425
ApeKI GCWGC 2 cut(s) 107, 209
ApoI RAATTY 2 cut(s) 65, 146
Asp700I GAANNNNTTC 1 cut(s) 119
AspS9I GGNCC 1 cut(s) 354
AsuHPI GGTGA 1 cut(s) 206
AvaII GGWCC 1 cut(s) 354
BalI TGGCCA 1 cut(s) 128
BanI GGYRCC 1 cut(s) 512
BanII GRGCYC 3 cut(s) 182, 321, 504
BbsI GAAGAC 1 cut(s) 112
Bbv12I GWGCWC 3 cut(s) 182, 321, 504
BbvI GCAGC 2 cut(s) 94, 196
BccI CCATC 1 cut(s) 400
BciT130I CCWGG 1 cut(s) 293
BcoDI GTCTC 2 cut(s) 127, 292
BfaI CTAG 2 cut(s) 77, 90
BfmI CTRYAG 1 cut(s) 159
BisI GCNGC 2 cut(s) 108, 210
BlsI GCNGC 2 cut(s) 109, 211
Bme1390I CCNGG 1 cut(s) 293
Bme18I GGWCC 1 cut(s) 354
BmgBI CACGTC 1 cut(s) 531
BmgT120I GGNCC 1 cut(s) 354
BmiI GGNNCC 1 cut(s) 514
BmrFI CCNGG 1 cut(s) 293
BmsI GCATC 1 cut(s) 208
BpiI GAAGAC 1 cut(s) 112
BpmI CTGGAG 1 cut(s) 395
BsaJI CCNNGG 2 cut(s) 292, 468
Bsc4I CCNNNNNNNGG 5 cut(s) 11, 90, 293, 331, 448
Bse1I ACTGG 2 cut(s) 486, 530
Bse3DI GCAATG 1 cut(s) 452
BseBI CCWGG 1 cut(s) 293
BseDI CCNNGG 2 cut(s) 292, 468
BseGI GGATG 2 cut(s) 321, 582
BseLI CCNNNNNNNGG 5 cut(s) 11, 90, 293, 331, 448
BseMI GCAATG 1 cut(s) 452
BseMII CTCAG 1 cut(s) 321
BseNI ACTGG 2 cut(s) 486, 530
BseXI GCAGC 2 cut(s) 94, 196
BsgI GTGCAG 1 cut(s) 60
Bsh1236I CGCG 1 cut(s) 350
BshFI GGCC 3 cut(s) 15, 128, 427
BshNI GGYRCC 1 cut(s) 512
BsiHKAI GWGCWC 3 cut(s) 182, 321, 504
BslI CCNNNNNNNGG 5 cut(s) 11, 90, 293, 331, 448
BsmAI GTCTC 2 cut(s) 127, 292
BsmBI CGTCTC 1 cut(s) 292
BsnI GGCC 3 cut(s) 15, 128, 427
Bsp1286I GDGCHC 3 cut(s) 182, 321, 504
Bsp143I GATC 2 cut(s) 370, 484
BspACI CCGC 5 cut(s) 243, 348, 410, 436, 516
BspANI GGCC 3 cut(s) 15, 128, 427
BspCNI CTCAG 1 cut(s) 322
BspFNI CGCG 1 cut(s) 350
BspLI GGNNCC 1 cut(s) 514
BspPI GGATC 2 cut(s) 378, 492
BspT107I GGYRCC 1 cut(s) 512
BsrDI GCAATG 1 cut(s) 452
BsrI ACTGG 2 cut(s) 486, 530
BssECI CCNNGG 2 cut(s) 292, 468
BssMI GATC 2 cut(s) 370, 484
Bst2UI CCWGG 1 cut(s) 293
Bst4CI ACNGT 2 cut(s) 472, 569
Bst6I CTCTTC 1 cut(s) 168
BstC8I GCNNGC 1 cut(s) 156
BstDEI CTNAG 1 cut(s) 330
BstDSI CCRYGG 1 cut(s) 468
BstENI CCTNNNNNAGG 1 cut(s) 88
BstF5I GGATG 2 cut(s) 321, 582
BstFNI CGCG 1 cut(s) 350
BstKTI GATC 2 cut(s) 373, 487
BstMAI GTCTC 2 cut(s) 127, 292
BstMBI GATC 2 cut(s) 370, 484
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstNI CCWGG 1 cut(s) 293
BstNSI RCATGY 1 cut(s) 286
BstSCI CCNGG 1 cut(s) 291
BstSFI CTRYAG 1 cut(s) 159
BstUI CGCG 1 cut(s) 350
BstV1I GCAGC 2 cut(s) 94, 196
BstV2I GAAGAC 1 cut(s) 112
BstX2I RGATCY 2 cut(s) 370, 484
BstYI RGATCY 2 cut(s) 370, 484
BsuRI GGCC 3 cut(s) 15, 128, 427
BtgI CCRYGG 1 cut(s) 468
BtgZI GCGATG 1 cut(s) 125
BtrI CACGTC 1 cut(s) 531
BtsCI GGATG 2 cut(s) 321, 582
BtsIMutI CAGTG 1 cut(s) 479
Cac8I GCNNGC 1 cut(s) 156
CaiI CAGNNNCTG 1 cut(s) 373
Cfr13I GGNCC 1 cut(s) 354
Csp6I GTAC 1 cut(s) 473
CviAII CATG 1 cut(s) 283
CviQI GTAC 1 cut(s) 473
DdeI CTNAG 1 cut(s) 330
DpnI GATC 2 cut(s) 372, 486
DpnII GATC 2 cut(s) 370, 484
EaeI YGGCCR 1 cut(s) 126
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
EciI GGCGGA 1 cut(s) 425
Ecl136II GAGCTC 3 cut(s) 180, 319, 502
Eco24I GRGCYC 3 cut(s) 182, 321, 504
Eco32I GATATC 1 cut(s) 345
Eco47I GGWCC 1 cut(s) 354
Eco53kI GAGCTC 3 cut(s) 180, 319, 502
Eco57I CTGAAG 1 cut(s) 419
EcoICRI GAGCTC 3 cut(s) 180, 319, 502
EcoNI CCTNNNNNAGG 1 cut(s) 88
EcoRI GAATTC 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 291
EcoRV GATATC 1 cut(s) 345
EcoT38I GRGCYC 3 cut(s) 182, 321, 504
Esp3I CGTCTC 1 cut(s) 292
FaeI CATG 1 cut(s) 286
FaiI YATR 7 cut(s) 215, 268, 284, 359, 461, 490, 561
FalI AAGNNNNNCTT 2 cut(s) 107, 139
FatI CATG 1 cut(s) 282
FauI CCCGC 1 cut(s) 236
Fnu4HI GCNGC 2 cut(s) 108, 210
FokI GGATG 1 cut(s) 308
FriOI GRGCYC 3 cut(s) 182, 321, 504
Fsp4HI GCNGC 2 cut(s) 108, 210
FspBI CTAG 2 cut(s) 77, 90
GluI GCNGC 2 cut(s) 108, 210
GsuI CTGGAG 1 cut(s) 395
HaeIII GGCC 3 cut(s) 15, 128, 427
Hin1II CATG 1 cut(s) 286
HinfI GANTC 1 cut(s) 59
HphI GGTGA 1 cut(s) 206
Hpy166II GTNNAC 1 cut(s) 523
Hpy188I TCNGA 4 cut(s) 29, 64, 145, 399
Hpy188III TCNNGA 3 cut(s) 56, 71, 374
Hpy8I GTNNAC 1 cut(s) 523
HpyAV CCTTC 3 cut(s) 26, 109, 398
HpyCH4III ACNGT 2 cut(s) 472, 569
HpyCH4IV ACGT 1 cut(s) 530
HpyCH4V TGCA 4 cut(s) 41, 260, 307, 572
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
HpyF3I CTNAG 1 cut(s) 330
HpySE526I ACGT 1 cut(s) 530
Hsp92II CATG 1 cut(s) 286
Kzo9I GATC 2 cut(s) 370, 484
LmnI GCTCC 2 cut(s) 316, 499
Lsp1109I GCAGC 2 cut(s) 94, 196
LweI GCATC 1 cut(s) 208
MaeI CTAG 2 cut(s) 77, 90
MaeII ACGT 1 cut(s) 530
MaeIII GTNAC 2 cut(s) 278, 550
MalI GATC 2 cut(s) 372, 486
MboI GATC 2 cut(s) 370, 484
MboII GAAGA 4 cut(s) 112, 185, 412, 415
MflI RGATCY 2 cut(s) 370, 484
MhlI GDGCHC 3 cut(s) 182, 321, 504
MlsI TGGCCA 1 cut(s) 128
MluCI AATT 2 cut(s) 65, 146
MluNI TGGCCA 1 cut(s) 128
MlyI GAGTC 1 cut(s) 68
MmeI TCCRAC 2 cut(s) 42, 294
MnlI CCTC 3 cut(s) 23, 266, 325
Mox20I TGGCCA 1 cut(s) 128
MroXI GAANNNNTTC 1 cut(s) 119
MscI TGGCCA 1 cut(s) 128
MslI CAYNNNNRTG 1 cut(s) 518
Msp20I TGGCCA 1 cut(s) 128
MspA1I CMGCKG 2 cut(s) 243, 518
MspR9I CCNGG 1 cut(s) 293
MvaI CCWGG 1 cut(s) 293
MvnI CGCG 1 cut(s) 350
MwoI GCNNNNNNNGC 1 cut(s) 218
NdeII GATC 2 cut(s) 370, 484
NlaIII CATG 1 cut(s) 286
NlaIV GGNNCC 1 cut(s) 514
NmuCI GTSAC 1 cut(s) 278
NspI RCATGY 1 cut(s) 286
OliI CACNNNNGTG 1 cut(s) 518
PdmI GAANNNNTTC 1 cut(s) 119
PflMI CCANNNNNTGG 2 cut(s) 11, 448
PkrI GCNGC 2 cut(s) 109, 211
PleI GAGTC 1 cut(s) 67
PpsI GAGTC 1 cut(s) 67
Psp124BI GAGCTC 3 cut(s) 182, 321, 504
Psp6I CCWGG 1 cut(s) 291
PspGI CCWGG 1 cut(s) 291
PspN4I GGNNCC 1 cut(s) 514
PspPI GGNCC 1 cut(s) 354
PstNI CAGNNNCTG 1 cut(s) 373
PsuI RGATCY 2 cut(s) 370, 484
RsaI GTAC 1 cut(s) 474
RsaNI GTAC 1 cut(s) 473
RseI CAYNNNNRTG 1 cut(s) 518
SacI GAGCTC 3 cut(s) 182, 321, 504
SatI GCNGC 2 cut(s) 108, 210
Sau3AI GATC 2 cut(s) 370, 484
Sau96I GGNCC 1 cut(s) 354
SchI GAGTC 1 cut(s) 68
ScrFI CCNGG 1 cut(s) 293
SduI GDGCHC 3 cut(s) 182, 321, 504
SetI ASST 9 cut(s) 34, 120, 182, 211, 294, 321, 424, 504, 533
SfaNI GCATC 1 cut(s) 208
SfcI CTRYAG 1 cut(s) 159
SinI GGWCC 1 cut(s) 354
SmiMI CAYNNNNRTG 1 cut(s) 518
Sse9I AATT 2 cut(s) 65, 146
SsiI CCGC 5 cut(s) 243, 348, 410, 436, 516
SspMI CTAG 2 cut(s) 77, 90
SstI GAGCTC 3 cut(s) 182, 321, 504
StyD4I CCNGG 1 cut(s) 291
TaaI ACNGT 2 cut(s) 472, 569
TaiI ACGT 1 cut(s) 533
TaqI TCGA 1 cut(s) 237
TasI AATT 2 cut(s) 65, 146
TscAI CASTG 1 cut(s) 486
TseFI GTSAC 1 cut(s) 278
TseI GCWGC 2 cut(s) 107, 209
Tsp45I GTSAC 1 cut(s) 278
TspDTI ATGAA 1 cut(s) 128
TspGWI ACGGA 1 cut(s) 285
TspRI CASTG 1 cut(s) 486
Van91I CCANNNNNTGG 2 cut(s) 11, 448
VpaK11BI GGWCC 1 cut(s) 354
XagI CCTNNNNNAGG 1 cut(s) 88
XapI RAATTY 2 cut(s) 65, 146
XceI RCATGY 1 cut(s) 286
XmnI GAANNNNTTC 1 cut(s) 119
XspI CTAG 2 cut(s) 77, 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.