pycom15g16960

Protein mrp homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Forward (+)
11909155 .. 11910048
894 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 294 bp
ATGCAACTTCTTCATGTTCCTTCTTCGCTGTATCTCTCATTCCAAAACGTAAAATCACATGAAGATGCCGGATTACTATCTTCATATGAGAAGCCTCTTCAGTCTTCAACGGCTGTATTTTGTTCGCTTCAGCAACAAAGACCTGAAAGGTCCAAATGGGTTTCGCGCAGAGGCTCTGTATTGAGCTCCTTCACTACTAAAGCTGCTTCATTGGAAGATGTAGTTGGTGCCGATGAAATTTTAAAGGCGGAAGCTGAGAAAGATGTACTCAAAGCGTTGTCTCAGATCGATTGA

Protein Analysis

98

Amino Acids

10.71

Weight (kDa)

6.09

Isoelectric Point (pI)

54.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 227
AccII CGCG 1 cut(s) 166
AciI CCGC 1 cut(s) 248
AcsI RAATTY 1 cut(s) 237
AcuI CTGAAG 2 cut(s) 83, 113
AfaI GTAC 1 cut(s) 267
AgsI TTSAA 1 cut(s) 108
AjuI GAANNNNNNNTTGG 2 cut(s) 207, 239
AluBI AGCT 3 cut(s) 186, 203, 254
AluI AGCT 3 cut(s) 186, 203, 254
Alw21I GWGCWC 1 cut(s) 188
Alw26I GTCTC 1 cut(s) 285
ApeKI GCWGC 1 cut(s) 203
ApoI RAATTY 1 cut(s) 237
AspLEI GCGC 1 cut(s) 168
AspS9I GGNCC 1 cut(s) 150
AvaII GGWCC 1 cut(s) 150
BanI GGYRCC 1 cut(s) 227
BanII GRGCYC 1 cut(s) 188
BbsI GAAGAC 1 cut(s) 96
Bbv12I GWGCWC 1 cut(s) 188
BbvI GCAGC 1 cut(s) 190
BceAI ACGGC 1 cut(s) 126
BcoDI GTCTC 1 cut(s) 285
BisI GCNGC 1 cut(s) 204
BlsI GCNGC 1 cut(s) 205
Bme18I GGWCC 1 cut(s) 150
BmgT120I GGNCC 1 cut(s) 150
BmiI GGNNCC 1 cut(s) 229
BmsI GCATC 1 cut(s) 55
BpiI GAAGAC 1 cut(s) 96
Bsa29I ATCGAT 1 cut(s) 288
BsaBI GATNNNNATC 1 cut(s) 76
Bse8I GATNNNNATC 1 cut(s) 76
BseCI ATCGAT 1 cut(s) 288
BseJI GATNNNNATC 1 cut(s) 76
BseMII CTCAG 1 cut(s) 246
BseXI GCAGC 1 cut(s) 190
Bsh1236I CGCG 1 cut(s) 166
BshNI GGYRCC 1 cut(s) 227
BshVI ATCGAT 1 cut(s) 288
BsiHKAI GWGCWC 1 cut(s) 188
BsiSI CCGG 1 cut(s) 69
BsmAI GTCTC 1 cut(s) 285
Bsp1286I GDGCHC 1 cut(s) 188
Bsp143I GATC 1 cut(s) 285
BspACI CCGC 1 cut(s) 248
BspCNI CTCAG 1 cut(s) 247
BspDI ATCGAT 1 cut(s) 288
BspFNI CGCG 1 cut(s) 166
BspLI GGNNCC 1 cut(s) 229
BspT107I GGYRCC 1 cut(s) 227
BssMI GATC 1 cut(s) 285
Bst6I CTCTTC 1 cut(s) 102
BstDEI CTNAG 2 cut(s) 255, 282
BstFNI CGCG 1 cut(s) 166
BstHHI GCGC 1 cut(s) 168
BstKTI GATC 1 cut(s) 288
BstMAI GTCTC 1 cut(s) 285
BstMBI GATC 1 cut(s) 285
BstUI CGCG 1 cut(s) 166
BstV1I GCAGC 1 cut(s) 190
BstV2I GAAGAC 1 cut(s) 96
Bsu15I ATCGAT 1 cut(s) 288
BsuTUI ATCGAT 1 cut(s) 288
CfoI GCGC 1 cut(s) 168
Cfr13I GGNCC 1 cut(s) 150
ClaI ATCGAT 1 cut(s) 288
Csp6I GTAC 1 cut(s) 266
CviAII CATG 2 cut(s) 14, 59
CviJI RGCY 6 cut(s) 94, 113, 174, 186, 203, 254
CviKI_1 RGCY 6 cut(s) 94, 113, 174, 186, 203, 254
CviQI GTAC 1 cut(s) 266
DdeI CTNAG 2 cut(s) 255, 282
DpnI GATC 1 cut(s) 287
DpnII GATC 1 cut(s) 285
DraI TTTAAA 1 cut(s) 243
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
EciI GGCGGA 1 cut(s) 263
Ecl136II GAGCTC 1 cut(s) 186
Eco24I GRGCYC 1 cut(s) 188
Eco47I GGWCC 1 cut(s) 150
Eco53kI GAGCTC 1 cut(s) 186
Eco57I CTGAAG 2 cut(s) 83, 113
EcoICRI GAGCTC 1 cut(s) 186
EcoT38I GRGCYC 1 cut(s) 188
FaeI CATG 2 cut(s) 17, 62
FaiI YATR 4 cut(s) 15, 60, 85, 87
FatI CATG 2 cut(s) 13, 58
FauNDI CATATG 1 cut(s) 85
Fnu4HI GCNGC 1 cut(s) 204
FriOI GRGCYC 1 cut(s) 188
Fsp4HI GCNGC 1 cut(s) 204
GlaI GCGC 1 cut(s) 167
GluI GCNGC 1 cut(s) 204
HapII CCGG 1 cut(s) 69
HhaI GCGC 1 cut(s) 168
Hin1II CATG 2 cut(s) 17, 62
Hin6I GCGC 1 cut(s) 166
HinP1I GCGC 1 cut(s) 166
HpaII CCGG 1 cut(s) 69
Hpy188I TCNGA 1 cut(s) 285
HpyAV CCTTC 2 cut(s) 30, 199
HpyCH4IV ACGT 1 cut(s) 48
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 2 cut(s) 255, 282
HpySE526I ACGT 1 cut(s) 48
Hsp92II CATG 2 cut(s) 17, 62
HspAI GCGC 1 cut(s) 166
Kzo9I GATC 1 cut(s) 285
LmnI GCTCC 1 cut(s) 191
LpnPI CCDG 2 cut(s) 82, 156
Lsp1109I GCAGC 1 cut(s) 190
LweI GCATC 1 cut(s) 55
MaeII ACGT 1 cut(s) 48
MalI GATC 1 cut(s) 287
MboI GATC 1 cut(s) 285
MboII GAAGA 6 cut(s) 15, 72, 74, 89, 96, 227
MhlI GDGCHC 1 cut(s) 188
MluCI AATT 1 cut(s) 237
MnlI CCTC 2 cut(s) 105, 164
MseI TTAA 1 cut(s) 242
MslI CAYNNNNRTG 1 cut(s) 63
MspI CCGG 1 cut(s) 69
MvnI CGCG 1 cut(s) 166
NdeI CATATG 1 cut(s) 85
NdeII GATC 1 cut(s) 285
NlaIII CATG 2 cut(s) 17, 62
NlaIV GGNNCC 1 cut(s) 229
PkrI GCNGC 1 cut(s) 205
Psp124BI GAGCTC 1 cut(s) 188
PspN4I GGNNCC 1 cut(s) 229
PspPI GGNCC 1 cut(s) 150
RsaI GTAC 1 cut(s) 267
RsaNI GTAC 1 cut(s) 266
RseI CAYNNNNRTG 1 cut(s) 63
SacI GAGCTC 1 cut(s) 188
SaqAI TTAA 1 cut(s) 242
SatI GCNGC 1 cut(s) 204
Sau3AI GATC 1 cut(s) 285
Sau96I GGNCC 1 cut(s) 150
SduI GDGCHC 1 cut(s) 188
SetI ASST 6 cut(s) 51, 145, 152, 188, 205, 256
SfaNI GCATC 1 cut(s) 55
SgeI CNNG 5 cut(s) 26, 71, 81, 155, 177
SinI GGWCC 1 cut(s) 150
SmiMI CAYNNNNRTG 1 cut(s) 63
Sse9I AATT 1 cut(s) 237
SsiI CCGC 1 cut(s) 248
SstI GAGCTC 1 cut(s) 188
TaiI ACGT 1 cut(s) 51
TaqI TCGA 1 cut(s) 288
TasI AATT 1 cut(s) 237
TatI WGTACW 1 cut(s) 265
Tru1I TTAA 1 cut(s) 242
Tru9I TTAA 1 cut(s) 242
TseI GCWGC 1 cut(s) 203
TspDTI ATGAA 4 cut(s) 72, 75, 198, 249
VpaK11BI GGWCC 1 cut(s) 150
XapI RAATTY 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.