pycom15g17550

Senescence-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Reverse (-)
12415207 .. 12416097
891 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 378 bp
ATGCTTGATGGGGTTGGTATTGTGACTGGATCGGTGATGGGTCCGGTGGTTAATTCCCAGGCAGGGAAGGCATTCTTTGCCATGGTTCCGGGAGAGGTCCTCTTGGCTTCACTTGATGGCATCAATAAGATTTTGGATGCAGCTGAAGTTGCTGAGAAACAAGCTCTTTCTGCCACCTCAGGTGCTGCAACTAGAATTGTCAGCAACAGGTTTGGGGAGAGTGCAGGGGAGACAACTGAGGATGTGTTTGCAACAACAGGGCATATTGCTAACACTGCTTGGAACATCTTCAAAATTAGAAAGGCCATCAATCCAGCCTCATCTGTCAAAACAGGAGTACTCAAGAATGCTGCCAAAAGTAGAAACCAATATTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence

Protein Analysis

126

Amino Acids

12.9

Weight (kDa)

9.1

Isoelectric Point (pI)

23.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence PF06911 2 - 119 7.6e-23 Senescence domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 37
AcuI CTGAAG 1 cut(s) 165
AfaI GTAC 1 cut(s) 339
AfiI CCNNNNNNNGG 1 cut(s) 63
AgsI TTSAA 1 cut(s) 292
AjnI CCWGG 1 cut(s) 57
AluBI AGCT 2 cut(s) 143, 164
AluI AGCT 2 cut(s) 143, 164
Alw26I GTCTC 1 cut(s) 224
AlwI GGATC 1 cut(s) 37
AlwNI CAGNNNCTG 1 cut(s) 185
AoxI GGCC 1 cut(s) 303
ApeKI GCWGC 3 cut(s) 140, 185, 350
Asp700I GAANNNNTTC 2 cut(s) 71, 287
AspS9I GGNCC 2 cut(s) 41, 97
AsuC2I CCSGG 1 cut(s) 90
AsuHPI GGTGA 1 cut(s) 46
AvaII GGWCC 2 cut(s) 41, 97
AxyI CCTNAGG 1 cut(s) 178
BbvI GCAGC 3 cut(s) 152, 172, 337
BccI CCATC 4 cut(s) 2, 31, 110, 314
BciT130I CCWGG 1 cut(s) 59
BcnI CCSGG 1 cut(s) 90
BcoDI GTCTC 1 cut(s) 224
BfaI CTAG 1 cut(s) 192
BisI GCNGC 3 cut(s) 141, 186, 351
BlsI GCNGC 3 cut(s) 142, 187, 352
BmcAI AGTACT 1 cut(s) 339
Bme1390I CCNGG 2 cut(s) 59, 90
Bme18I GGWCC 2 cut(s) 41, 97
BmgT120I GGNCC 2 cut(s) 41, 97
BmiI GGNNCC 2 cut(s) 42, 87
BmrFI CCNGG 2 cut(s) 59, 90
BmsI GCATC 2 cut(s) 127, 129
BplI GAGNNNNNCTC 2 cut(s) 84, 116
BpuEI CTTGAG 1 cut(s) 326
BpuMI CCSGG 1 cut(s) 90
BsaJI CCNNGG 2 cut(s) 57, 81
BsaWI WCCGGW 1 cut(s) 43
Bsc4I CCNNNNNNNGG 1 cut(s) 63
Bse1I ACTGG 1 cut(s) 31
Bse21I CCTNAGG 1 cut(s) 178
BseBI CCWGG 1 cut(s) 59
BseDI CCNNGG 2 cut(s) 57, 81
BseGI GGATG 2 cut(s) 142, 247
BseLI CCNNNNNNNGG 1 cut(s) 63
BseMII CTCAG 3 cut(s) 144, 192, 228
BseNI ACTGG 1 cut(s) 31
BseXI GCAGC 3 cut(s) 152, 172, 337
BsgI GTGCAG 1 cut(s) 243
BshFI GGCC 1 cut(s) 305
BsiSI CCGG 2 cut(s) 44, 89
BslI CCNNNNNNNGG 1 cut(s) 63
BsmAI GTCTC 1 cut(s) 224
BsmI GAATGC 2 cut(s) 71, 352
BsnI GGCC 1 cut(s) 305
Bsp143I GATC 1 cut(s) 29
Bsp19I CCATGG 1 cut(s) 81
BspANI GGCC 1 cut(s) 305
BspCNI CTCAG 3 cut(s) 145, 191, 229
BspLI GGNNCC 2 cut(s) 42, 87
BspPI GGATC 1 cut(s) 37
BsrI ACTGG 1 cut(s) 31
BssECI CCNNGG 2 cut(s) 57, 81
BssMI GATC 1 cut(s) 29
BssT1I CCWWGG 1 cut(s) 81
Bst2UI CCWGG 1 cut(s) 59
BstAPI GCANNNNNTGC 1 cut(s) 77
BstDEI CTNAG 3 cut(s) 153, 178, 237
BstDSI CCRYGG 1 cut(s) 81
BstF5I GGATG 2 cut(s) 142, 247
BstKTI GATC 1 cut(s) 32
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 1 cut(s) 29
BstMWI GCNNNNNNNGC 5 cut(s) 68, 77, 149, 170, 275
BstNI CCWGG 1 cut(s) 59
BstSCI CCNGG 2 cut(s) 57, 88
BstV1I GCAGC 3 cut(s) 152, 172, 337
Bsu36I CCTNAGG 1 cut(s) 178
BsuRI GGCC 1 cut(s) 305
BtgI CCRYGG 1 cut(s) 81
BtsCI GGATG 2 cut(s) 142, 247
BtsI GCAGTG 1 cut(s) 273
BtsIMutI CAGTG 1 cut(s) 273
CaiI CAGNNNCTG 1 cut(s) 185
Cfr13I GGNCC 2 cut(s) 41, 97
Csp6I GTAC 1 cut(s) 338
CviAII CATG 1 cut(s) 82
CviJI RGCY 5 cut(s) 107, 143, 164, 305, 317
CviKI_1 RGCY 5 cut(s) 107, 143, 164, 305, 317
CviQI GTAC 1 cut(s) 338
DdeI CTNAG 3 cut(s) 153, 178, 237
DpnI GATC 1 cut(s) 31
DpnII GATC 1 cut(s) 29
Eco130I CCWWGG 1 cut(s) 81
Eco47I GGWCC 2 cut(s) 41, 97
Eco57I CTGAAG 1 cut(s) 165
Eco81I CCTNAGG 1 cut(s) 178
EcoO109I RGGNCCY 1 cut(s) 97
EcoRII CCWGG 1 cut(s) 57
EcoT14I CCWWGG 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 81
FaeI CATG 1 cut(s) 85
FaiI YATR 2 cut(s) 83, 264
FalI AAGNNNNNCTT 2 cut(s) 59, 91
FatI CATG 1 cut(s) 81
Fnu4HI GCNGC 3 cut(s) 141, 186, 351
FokI GGATG 2 cut(s) 149, 254
Fsp4HI GCNGC 3 cut(s) 141, 186, 351
FspBI CTAG 1 cut(s) 192
GluI GCNGC 3 cut(s) 141, 186, 351
HaeIII GGCC 1 cut(s) 305
HapII CCGG 2 cut(s) 44, 89
Hin1II CATG 1 cut(s) 85
HpaII CCGG 2 cut(s) 44, 89
HphI GGTGA 1 cut(s) 46
Hpy188III TCNNGA 1 cut(s) 343
HpyAV CCTTC 1 cut(s) 61
HpyCH4V TGCA 4 cut(s) 140, 188, 224, 251
HpyF10VI GCNNNNNNNGC 5 cut(s) 68, 77, 149, 170, 275
HpyF3I CTNAG 3 cut(s) 153, 178, 237
Hsp92II CATG 1 cut(s) 85
Kzo9I GATC 1 cut(s) 29
Lsp1109I GCAGC 3 cut(s) 152, 172, 337
LweI GCATC 2 cut(s) 127, 129
MaeI CTAG 1 cut(s) 192
MaeIII GTNAC 1 cut(s) 22
MalI GATC 1 cut(s) 31
MboI GATC 1 cut(s) 29
MboII GAAGA 1 cut(s) 280
MluCI AATT 3 cut(s) 52, 195, 294
MnlI CCTC 5 cut(s) 88, 110, 187, 232, 328
MroXI GAANNNNTTC 2 cut(s) 71, 287
MseI TTAA 2 cut(s) 51, 376
MspA1I CMGCKG 1 cut(s) 143
MspI CCGG 2 cut(s) 44, 89
MspR9I CCNGG 2 cut(s) 59, 90
Mva1269I GAATGC 2 cut(s) 71, 352
MvaI CCWGG 1 cut(s) 59
MwoI GCNNNNNNNGC 5 cut(s) 68, 77, 149, 170, 275
NciI CCSGG 1 cut(s) 90
NcoI CCATGG 1 cut(s) 81
NdeII GATC 1 cut(s) 29
NlaIII CATG 1 cut(s) 85
NlaIV GGNNCC 2 cut(s) 42, 87
NmuCI GTSAC 1 cut(s) 22
PctI GAATGC 2 cut(s) 71, 352
PdmI GAANNNNTTC 2 cut(s) 71, 287
PfoI TCCNGGA 1 cut(s) 88
PkrI GCNGC 3 cut(s) 142, 187, 352
PpuMI RGGWCCY 1 cut(s) 97
Psp5II RGGWCCY 1 cut(s) 97
Psp6I CCWGG 1 cut(s) 57
PspGI CCWGG 1 cut(s) 57
PspN4I GGNNCC 2 cut(s) 42, 87
PspPI GGNCC 2 cut(s) 41, 97
PspPPI RGGWCCY 1 cut(s) 97
PstNI CAGNNNCTG 1 cut(s) 185
PvuII CAGCTG 1 cut(s) 143
RsaI GTAC 1 cut(s) 339
RsaNI GTAC 1 cut(s) 338
SaqAI TTAA 2 cut(s) 51, 376
SatI GCNGC 3 cut(s) 141, 186, 351
Sau3AI GATC 1 cut(s) 29
Sau96I GGNCC 2 cut(s) 41, 97
ScaI AGTACT 1 cut(s) 339
ScrFI CCNGG 2 cut(s) 59, 90
SetI ASST 6 cut(s) 99, 145, 166, 179, 184, 212
SfaNI GCATC 2 cut(s) 127, 129
SinI GGWCC 2 cut(s) 41, 97
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
Sse9I AATT 3 cut(s) 52, 195, 294
SspI AATATT 1 cut(s) 371
SspMI CTAG 1 cut(s) 192
StyD4I CCNGG 2 cut(s) 57, 88
StyI CCWWGG 1 cut(s) 81
TasI AATT 3 cut(s) 52, 195, 294
TatI WGTACW 1 cut(s) 337
Tru1I TTAA 2 cut(s) 51, 376
Tru9I TTAA 2 cut(s) 51, 376
TscAI CASTG 1 cut(s) 280
TseFI GTSAC 1 cut(s) 22
TseI GCWGC 3 cut(s) 140, 185, 350
Tsp45I GTSAC 1 cut(s) 22
TspRI CASTG 1 cut(s) 280
VpaK11BI GGWCC 2 cut(s) 41, 97
XmnI GAANNNNTTC 2 cut(s) 71, 287
XspI CTAG 1 cut(s) 192
ZrmI AGTACT 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.