pycom15g17830

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Reverse (-)
12632564 .. 12634579
2016 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1146 bp
ATGTTACTGGAGACGAATTACCGACTCCTGTACCTGCTCGACAGGGCTCTCGTTCTCGGGATGGATCATTCCTTCCCTTTCCTGGAATCGTTGAATGAGGTTTTGGAAACAAATAGAAACGAGGAATCTCAGAGTCATGTGTATAGGATGTTTTTCATGGGGCCAAATACATTCAGTGAACCTTGGCATCTACCTCATTCCCCTCCAGAACAAGTCACAGATATTGTGTATGAGGCTGCATTTAATAGATTTGTGGAAGAGATTAATGCTTTAGCTGCTTATCAGTGGTGGGAAGGATCAGTCTACAGCATTCTTTGTGTTTTTGTCTATCCACTTGCGTGGTCATGGTTACAGAGTCGAAGGAAAAAGAAGTTACAACAACTGCGTGAATATGTTCGATCAGAATATGATCATTCTTGCTTGCGTTCTTGTCGTTCACGTGCACTGTATGAAGGACTCAAGGTAGCTGCAACTTCTGATTTAATGCTTGCATACATGGACTTTTACCTCGGTGGAGATGAGAAAAGAGCTGGTCTTCCTCCCCGTCTTCATCAGAGATTTCCCTTGTCATTAATTTTTGGAGGAGATGGAAGTTACATGGCGCCTTTCCATCTTTGCAGTGATAACATTCTCACTAGCCTCATGAGTCAGAGTATTCCACCTACCATCTGGTATCGGCTTGTAGCTGGTCTAAACGCTCAACTGCGATTAGTTCGGCGTGGTCACTTAAAGTTGACTTTTGGTCATGTTATCAGCTGGCTTGAAACGCACGCCAACCCTACTCTTAGTGCATATGGCTTACATGTTGCTCTTGCGTGGTTTCAGCCTACAGCGTCTGGGTATAGCCAGTTTGGACTTTTGGTATATGCTTTAAACAACGAAAGTGTGCCACCAGCACTGGAGGGTCAAGATGCATTGTCACCGCGGGATCATCTGTCACGTACACCAAGAAATCATTGGGAAAACCCATTCGACCATTTGAGACTCATCGACCATTGGATGTCACAGAAAAGAATTTCTGGAGGAATTTTACTCAGCAAGAGCTTAAGGACGTTTAAAGAGAAGAAAGTCATATGTTATCCGTTTTCTTTCATAGTTTATAATGGCAAACCGGTTGGCCATCAGGATCTTCAGTGCTTTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

382

Amino Acids

44.02

Weight (kDa)

8.15

Isoelectric Point (pI)

55.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1101
Acc36I ACCTGC 1 cut(s) 42
AccB1I GGYRCC 1 cut(s) 601
AccI GTMKAC 1 cut(s) 303
AccII CGCG 1 cut(s) 925
AciI CCGC 2 cut(s) 923, 925
AclWI GGATC 4 cut(s) 72, 304, 936, 1134
AcoI YGGCCR 1 cut(s) 1117
AcsI RAATTY 2 cut(s) 1014, 1026
AcuI CTGAAG 1 cut(s) 1115
AcvI CACGTG 1 cut(s) 440
AcyI GRCGYC 1 cut(s) 602
AfaI GTAC 2 cut(s) 32, 943
AfiI CCNNNNNNNGG 1 cut(s) 82
AflII CTTAAG 1 cut(s) 1045
AflIII ACRYGT 1 cut(s) 802
AgeI ACCGGT 1 cut(s) 1111
AgsI TTSAA 2 cut(s) 94, 764
AhdI GACNNNNNGTC 1 cut(s) 741
AjnI CCWGG 1 cut(s) 81
AjuI GAANNNNNNNTTGG 2 cut(s) 86, 118
AleI CACNNNNGTG 1 cut(s) 337
AluBI AGCT 6 cut(s) 275, 467, 530, 686, 756, 1044
AluI AGCT 6 cut(s) 275, 467, 530, 686, 756, 1044
Alw21I GWGCWC 1 cut(s) 445
Alw26I GTCTC 2 cut(s) 5, 976
Alw44I GTGCAC 1 cut(s) 441
AlwI GGATC 4 cut(s) 72, 304, 936, 1134
AlwNI CAGNNNCTG 1 cut(s) 836
Ama87I CYCGRG 1 cut(s) 56
AoxI GGCC 2 cut(s) 161, 1117
ApaLI GTGCAC 1 cut(s) 441
ApeKI GCWGC 3 cut(s) 236, 275, 467
ApoI RAATTY 2 cut(s) 1014, 1026
AseI ATTAAT 2 cut(s) 264, 572
AsiGI ACCGGT 1 cut(s) 1111
Asp700I GAANNNNTTC 1 cut(s) 393
AspLEI GCGC 1 cut(s) 604
AspS9I GGNCC 1 cut(s) 161
AsuHPI GGTGA 1 cut(s) 912
AvaI CYCGRG 1 cut(s) 56
BaeGI GKGCMC 1 cut(s) 445
BaeI ACNNNNGTAYC 2 cut(s) 14, 47
BalI TGGCCA 1 cut(s) 1119
BanI GGYRCC 1 cut(s) 601
BanII GRGCYC 1 cut(s) 49
BbrPI CACGTG 1 cut(s) 440
BbsI GAAGAC 2 cut(s) 527, 539
Bbv12I GWGCWC 1 cut(s) 445
BbvI GCAGC 3 cut(s) 223, 262, 454
BccI CCATC 5 cut(s) 55, 581, 618, 674, 1128
BciT130I CCWGG 1 cut(s) 83
BclI TGATCA 1 cut(s) 409
BcoDI GTCTC 2 cut(s) 5, 976
BfaI CTAG 1 cut(s) 636
BfmI CTRYAG 2 cut(s) 304, 828
BfoI RGCGCY 1 cut(s) 605
BfrI CTTAAG 1 cut(s) 1045
BfuAI ACCTGC 1 cut(s) 42
BisI GCNGC 3 cut(s) 237, 276, 468
BlsI GCNGC 3 cut(s) 238, 277, 469
Bme1390I CCNGG 1 cut(s) 83
BmeRI GACNNNNNGTC 1 cut(s) 741
BmeT110I CYCGRG 1 cut(s) 56
BmgT120I GGNCC 1 cut(s) 161
BmiI GGNNCC 2 cut(s) 162, 603
BmrFI CCNGG 1 cut(s) 83
BmsI GCATC 2 cut(s) 196, 901
BpiI GAAGAC 2 cut(s) 527, 539
BpmI CTGGAG 4 cut(s) 29, 189, 920, 1041
BpuEI CTTGAG 1 cut(s) 443
BsaAI YACGTR 2 cut(s) 440, 941
BsaHI GRCGYC 1 cut(s) 602
BsaJI CCNNGG 3 cut(s) 182, 508, 923
BsaWI WCCGGW 1 cut(s) 1111
Bsc4I CCNNNNNNNGG 1 cut(s) 82
Bse118I RCCGGY 1 cut(s) 1111
Bse1I ACTGG 3 cut(s) 12, 847, 903
BseBI CCWGG 1 cut(s) 83
BseDI CCNNGG 3 cut(s) 182, 508, 923
BseGI GGATG 3 cut(s) 66, 153, 1005
BseLI CCNNNNNNNGG 1 cut(s) 82
BseMII CTCAG 2 cut(s) 143, 1048
BseNI ACTGG 3 cut(s) 12, 847, 903
BseRI GAGGAG 1 cut(s) 597
BseSI GKGCMC 1 cut(s) 445
BseXI GCAGC 3 cut(s) 223, 262, 454
Bsh1236I CGCG 1 cut(s) 925
BshFI GGCC 2 cut(s) 163, 1119
BshNI GGYRCC 1 cut(s) 601
BshTI ACCGGT 1 cut(s) 1111
BsiHKAI GWGCWC 1 cut(s) 445
BsiHKCI CYCGRG 1 cut(s) 56
BsiSI CCGG 1 cut(s) 1112
BslI CCNNNNNNNGG 1 cut(s) 82
BsmAI GTCTC 2 cut(s) 5, 976
BsmBI CGTCTC 1 cut(s) 5
BsmI GAATGC 1 cut(s) 309
BsnI GGCC 2 cut(s) 163, 1119
BsoBI CYCGRG 1 cut(s) 56
Bsp1286I GDGCHC 2 cut(s) 49, 445
Bsp143I GATC 6 cut(s) 64, 296, 398, 409, 928, 1126
BspACI CCGC 2 cut(s) 923, 925
BspANI GGCC 2 cut(s) 163, 1119
BspCNI CTCAG 2 cut(s) 142, 1047
BspFNI CGCG 1 cut(s) 925
BspHI TCATGA 1 cut(s) 642
BspLI GGNNCC 2 cut(s) 162, 603
BspMI ACCTGC 1 cut(s) 42
BspPI GGATC 4 cut(s) 72, 304, 936, 1134
BspT107I GGYRCC 1 cut(s) 601
BspTI CTTAAG 1 cut(s) 1045
BsrFI RCCGGY 1 cut(s) 1111
BsrI ACTGG 3 cut(s) 12, 847, 903
BssAI RCCGGY 1 cut(s) 1111
BssECI CCNNGG 3 cut(s) 182, 508, 923
BssMI GATC 6 cut(s) 64, 296, 398, 409, 928, 1126
BssNI GRCGYC 1 cut(s) 602
BssT1I CCWWGG 1 cut(s) 182
Bst2UI CCWGG 1 cut(s) 83
Bst4CI ACNGT 1 cut(s) 447
Bst6I CTCTTC 1 cut(s) 252
BstACI GRCGYC 1 cut(s) 602
BstAFI CTTAAG 1 cut(s) 1045
BstBAI YACGTR 2 cut(s) 440, 941
BstC8I GCNNGC 4 cut(s) 422, 489, 758, 771
BstDEI CTNAG 3 cut(s) 129, 785, 1034
BstDSI CCRYGG 1 cut(s) 923
BstF5I GGATG 3 cut(s) 66, 153, 1005
BstFNI CGCG 1 cut(s) 925
BstH2I RGCGCY 1 cut(s) 605
BstHHI GCGC 1 cut(s) 604
BstKTI GATC 6 cut(s) 67, 299, 401, 412, 931, 1129
BstMAI GTCTC 2 cut(s) 5, 976
BstMBI GATC 6 cut(s) 64, 296, 398, 409, 928, 1126
BstMWI GCNNNNNNNGC 2 cut(s) 275, 766
BstNI CCWGG 1 cut(s) 83
BstNSI RCATGY 1 cut(s) 806
BstSCI CCNGG 1 cut(s) 81
BstSFI CTRYAG 2 cut(s) 304, 828
BstSLI GKGCMC 1 cut(s) 445
BstUI CGCG 1 cut(s) 925
BstV1I GCAGC 3 cut(s) 223, 262, 454
BstV2I GAAGAC 2 cut(s) 527, 539
BstX2I RGATCY 1 cut(s) 1126
BstXI CCANNNNNNTGG 1 cut(s) 339
BstYI RGATCY 1 cut(s) 1126
BsuRI GGCC 2 cut(s) 163, 1119
BtgI CCRYGG 1 cut(s) 923
BtsCI GGATG 3 cut(s) 66, 153, 1005
BtsI GCAGTG 1 cut(s) 625
BtsIMutI CAGTG 6 cut(s) 181, 290, 443, 625, 896, 1139
BveI ACCTGC 1 cut(s) 42
Cac8I GCNNGC 4 cut(s) 422, 489, 758, 771
CaiI CAGNNNCTG 1 cut(s) 836
CciI TCATGA 1 cut(s) 642
CfoI GCGC 1 cut(s) 604
Cfr10I RCCGGY 1 cut(s) 1111
Cfr13I GGNCC 1 cut(s) 161
Cfr42I CCGCGG 1 cut(s) 926
CseI GACGC 1 cut(s) 822
Csp6I GTAC 2 cut(s) 31, 942
CspAI ACCGGT 1 cut(s) 1111
CviAII CATG 8 cut(s) 137, 157, 345, 496, 598, 643, 746, 803
CviQI GTAC 2 cut(s) 31, 942
DdeI CTNAG 3 cut(s) 129, 785, 1034
DinI GGCGCC 1 cut(s) 603
DpnI GATC 6 cut(s) 66, 298, 400, 411, 930, 1128
DpnII GATC 6 cut(s) 64, 296, 398, 409, 928, 1126
DraI TTTAAA 2 cut(s) 873, 1057
DriI GACNNNNNGTC 1 cut(s) 741
EaeI YGGCCR 1 cut(s) 1117
Eam1104I CTCTTC 1 cut(s) 252
Eam1105I GACNNNNNGTC 1 cut(s) 741
EarI CTCTTC 1 cut(s) 252
Eco130I CCWWGG 1 cut(s) 182
Eco24I GRGCYC 1 cut(s) 49
Eco57I CTGAAG 1 cut(s) 1115
Eco72I CACGTG 1 cut(s) 440
Eco88I CYCGRG 1 cut(s) 56
EcoRII CCWGG 1 cut(s) 81
EcoT14I CCWWGG 1 cut(s) 182
EcoT22I ATGCAT 1 cut(s) 916
EcoT38I GRGCYC 1 cut(s) 49
EgeI GGCGCC 1 cut(s) 603
EheI GGCGCC 1 cut(s) 603
ErhI CCWWGG 1 cut(s) 182
Esp3I CGTCTC 1 cut(s) 5
FaeI CATG 8 cut(s) 140, 160, 348, 499, 601, 646, 749, 806
FatI CATG 8 cut(s) 136, 156, 344, 495, 597, 642, 745, 802
FauI CCCGC 1 cut(s) 918
FauNDI CATATG 2 cut(s) 793, 1073
FbaI TGATCA 1 cut(s) 409
FblI GTMKAC 1 cut(s) 303
Fnu4HI GCNGC 3 cut(s) 237, 276, 468
FokI GGATG 3 cut(s) 73, 160, 1012
FriOI GRGCYC 1 cut(s) 49
Fsp4HI GCNGC 3 cut(s) 237, 276, 468
FspBI CTAG 1 cut(s) 636
GlaI GCGC 1 cut(s) 603
GluI GCNGC 3 cut(s) 237, 276, 468
GsuI CTGGAG 4 cut(s) 29, 189, 920, 1041
HaeII RGCGCY 1 cut(s) 605
HaeIII GGCC 2 cut(s) 163, 1119
HapII CCGG 1 cut(s) 1112
HgaI GACGC 1 cut(s) 822
HhaI GCGC 1 cut(s) 604
Hin1I GRCGYC 1 cut(s) 602
Hin1II CATG 8 cut(s) 140, 160, 348, 499, 601, 646, 749, 806
Hin6I GCGC 1 cut(s) 602
HinP1I GCGC 1 cut(s) 602
HincII GTYRAC 1 cut(s) 735
HindII GTYRAC 1 cut(s) 735
HinfI GANTC 8 cut(s) 24, 86, 125, 133, 355, 456, 646, 984
HpaII CCGG 1 cut(s) 1112
HphI GGTGA 1 cut(s) 912
Hpy166II GTNNAC 6 cut(s) 179, 304, 437, 443, 735, 944
Hpy188I TCNGA 5 cut(s) 132, 403, 478, 555, 651
Hpy188III TCNNGA 6 cut(s) 58, 206, 643, 908, 1020, 1124
Hpy8I GTNNAC 6 cut(s) 179, 304, 437, 443, 735, 944
HpyAV CCTTC 4 cut(s) 82, 287, 354, 446
HpyCH4III ACNGT 1 cut(s) 447
HpyCH4IV ACGT 3 cut(s) 439, 940, 1052
HpyCH4V TGCA 7 cut(s) 239, 443, 470, 491, 618, 791, 914
HpyF10VI GCNNNNNNNGC 2 cut(s) 275, 766
HpyF3I CTNAG 3 cut(s) 129, 785, 1034
HpySE526I ACGT 3 cut(s) 439, 940, 1052
Hsp92I GRCGYC 1 cut(s) 602
Hsp92II CATG 8 cut(s) 140, 160, 348, 499, 601, 646, 749, 806
HspAI GCGC 1 cut(s) 602
KasI GGCGCC 1 cut(s) 601
Ksp22I TGATCA 1 cut(s) 409
KspI CCGCGG 1 cut(s) 926
Kzo9I GATC 6 cut(s) 64, 296, 398, 409, 928, 1126
Lsp1109I GCAGC 3 cut(s) 223, 262, 454
LweI GCATC 2 cut(s) 196, 901
MaeI CTAG 1 cut(s) 636
MaeII ACGT 3 cut(s) 439, 940, 1052
MaeIII GTNAC 9 cut(s) 3, 214, 348, 372, 593, 722, 918, 936, 1002
MalI GATC 6 cut(s) 66, 298, 400, 411, 930, 1128
MboI GATC 6 cut(s) 64, 296, 398, 409, 928, 1126
MboII GAAGA 5 cut(s) 269, 527, 539, 1075, 1121
MflI RGATCY 1 cut(s) 1126
MhlI GDGCHC 2 cut(s) 49, 445
MlsI TGGCCA 1 cut(s) 1119
MluCI AATT 4 cut(s) 16, 573, 1014, 1026
MluNI TGGCCA 1 cut(s) 1119
Mly113I GGCGCC 1 cut(s) 602
MlyI GAGTC 6 cut(s) 18, 142, 364, 450, 655, 978
Mox20I TGGCCA 1 cut(s) 1119
Mph1103I ATGCAT 1 cut(s) 916
MroXI GAANNNNTTC 1 cut(s) 393
MscI TGGCCA 1 cut(s) 1119
MseI TTAA 8 cut(s) 243, 264, 482, 572, 728, 872, 1046, 1056
MslI CAYNNNNRTG 1 cut(s) 337
Msp20I TGGCCA 1 cut(s) 1119
MspA1I CMGCKG 2 cut(s) 756, 925
MspCI CTTAAG 1 cut(s) 1045
MspI CCGG 1 cut(s) 1112
MspR9I CCNGG 1 cut(s) 83
Mva1269I GAATGC 1 cut(s) 309
MvaI CCWGG 1 cut(s) 83
MvnI CGCG 1 cut(s) 925
MwoI GCNNNNNNNGC 2 cut(s) 275, 766
NarI GGCGCC 1 cut(s) 602
NdeI CATATG 2 cut(s) 793, 1073
NdeII GATC 6 cut(s) 64, 296, 398, 409, 928, 1126
NlaIII CATG 8 cut(s) 140, 160, 348, 499, 601, 646, 749, 806
NlaIV GGNNCC 2 cut(s) 162, 603
NmuCI GTSAC 5 cut(s) 214, 722, 918, 936, 1002
NsiI ATGCAT 1 cut(s) 916
NspI RCATGY 1 cut(s) 806
OliI CACNNNNGTG 1 cut(s) 337
PagI TCATGA 1 cut(s) 642
PciI ACATGT 1 cut(s) 802
PctI GAATGC 1 cut(s) 309
PdmI GAANNNNTTC 1 cut(s) 393
PfeI GAWTC 2 cut(s) 86, 125
PfoI TCCNGGA 1 cut(s) 81
PinAI ACCGGT 1 cut(s) 1111
PkrI GCNGC 3 cut(s) 238, 277, 469
PleI GAGTC 6 cut(s) 18, 141, 363, 450, 654, 978
PluTI GGCGCC 1 cut(s) 605
PmaCI CACGTG 1 cut(s) 440
PmlI CACGTG 1 cut(s) 440
PpsI GAGTC 6 cut(s) 18, 141, 363, 450, 654, 978
Ppu21I YACGTR 2 cut(s) 440, 941
PscI ACATGT 1 cut(s) 802
PshBI ATTAAT 2 cut(s) 264, 572
PsiI TTATAA 1 cut(s) 1101
Psp6I CCWGG 1 cut(s) 81
PspCI CACGTG 1 cut(s) 440
PspGI CCWGG 1 cut(s) 81
PspN4I GGNNCC 2 cut(s) 162, 603
PspPI GGNCC 1 cut(s) 161
PstNI CAGNNNCTG 1 cut(s) 836
PsuI RGATCY 1 cut(s) 1126
PvuII CAGCTG 1 cut(s) 756
RsaI GTAC 2 cut(s) 32, 943
RsaNI GTAC 2 cut(s) 31, 942
RseI CAYNNNNRTG 1 cut(s) 337
SacII CCGCGG 1 cut(s) 926
SaqAI TTAA 8 cut(s) 243, 264, 482, 572, 728, 872, 1046, 1056
SatI GCNGC 3 cut(s) 237, 276, 468
Sau3AI GATC 6 cut(s) 64, 296, 398, 409, 928, 1126
Sau96I GGNCC 1 cut(s) 161
SchI GAGTC 6 cut(s) 18, 142, 364, 450, 655, 978
ScrFI CCNGG 1 cut(s) 83
SduI GDGCHC 2 cut(s) 49, 445
SfaNI GCATC 2 cut(s) 196, 901
SfcI CTRYAG 2 cut(s) 304, 828
SfoI GGCGCC 1 cut(s) 603
Sfr303I CCGCGG 1 cut(s) 926
SgrBI CCGCGG 1 cut(s) 926
SmiMI CAYNNNNRTG 1 cut(s) 337
SmlI CTYRAG 2 cut(s) 458, 1045
SmoI CTYRAG 2 cut(s) 458, 1045
Sse9I AATT 4 cut(s) 16, 573, 1014, 1026
SsiI CCGC 2 cut(s) 923, 925
SspDI GGCGCC 1 cut(s) 601
SspMI CTAG 1 cut(s) 636
StyD4I CCNGG 1 cut(s) 81
StyI CCWWGG 1 cut(s) 182
TaaI ACNGT 1 cut(s) 447
TaiI ACGT 3 cut(s) 442, 943, 1055
TaqI TCGA 5 cut(s) 39, 358, 397, 972, 990
TasI AATT 4 cut(s) 16, 573, 1014, 1026
TfiI GAWTC 2 cut(s) 86, 125
Tru1I TTAA 8 cut(s) 243, 264, 482, 572, 728, 872, 1046, 1056
Tru9I TTAA 8 cut(s) 243, 264, 482, 572, 728, 872, 1046, 1056
TscAI CASTG 6 cut(s) 181, 290, 450, 625, 903, 1139
TseFI GTSAC 5 cut(s) 214, 722, 918, 936, 1002
TseI GCWGC 3 cut(s) 236, 275, 467
Tsp45I GTSAC 5 cut(s) 214, 722, 918, 936, 1002
TspDTI ATGAA 4 cut(s) 145, 465, 539, 1081
TspGWI ACGGA 1 cut(s) 1071
TspRI CASTG 6 cut(s) 181, 290, 450, 625, 903, 1139
Vha464I CTTAAG 1 cut(s) 1045
VneI GTGCAC 1 cut(s) 441
VspI ATTAAT 2 cut(s) 264, 572
XapI RAATTY 2 cut(s) 1014, 1026
XceI RCATGY 1 cut(s) 806
XcmI CCANNNNNNNNNTGG 2 cut(s) 666, 954
XmiI GTMKAC 1 cut(s) 303
XmnI GAANNNNTTC 1 cut(s) 393
XspI CTAG 1 cut(s) 636
Zsp2I ATGCAT 1 cut(s) 916
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.